RNA id: XM_021574383.2


Basic Information

Item Value
RNA id XM_021574383.2
length 1169
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110497915
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42601758 ~ 42604764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATCACGTGACTTAACCCGGAACTGAGCATCATTTCGTGTTTTTTTTTGCATCATTTAGTATCGCGCTAGCTTGGTGGTGACTGACTGTAGCGTACAGAGCCAGCTACAGCATGTCTAGATTTTGTATATTACTAATACTTGTTTCTGTGATTTTTGATTCGACCTTTTCTATTACGTTCTATTTACCGGTGAATCTTAGAAAATGTTTGCGGGAAGAGATCCACAAAGACGTGCTGGTTACAGGCGAATACGAAGTTAGCGACCAACCAAATGCGAAAACCAATCTCAAGATCACAGATTCATCAGGTCACACCTTGTACTCCAAGGAGGATGCTTCAAAGGGAAAATTTGCCTTTACAACTGAGGACTATGATATGTTTGAGGTTTGCTTTGAAAGCAAATCCCCCCTAGGTACTGGAAGGGTCCCAGACCAGCTAGTCAATTTAGACATGAAGCATGGTGTGGAGGCAAAGAATTACGAAGAGATTGCAAAAGTTGAGAAGCTGAAGCCCCTAGAAGTTGAACTAAGACGCCTCGAGGACTTATCGGAGTCCATTGTGAATGATTTTGCCTACATGAAGAAGCGTGAAGAGGAAATGAGGGACACAAATGAATCCACCAACACGCGTGTCCTGTACTTCAGTATCTTCTCTATGTGCTGTCTAATTGGGCTGGCAACATGGCAGGTCTTCTATCTGCGGCGTTTCTTCAAGGCGAAGAAGCTGATTGAGTAAACCCATCAATGAAACGAGGACCATCATGTTGAGGACTTTTGGGAAATGGTGTTTGCTGTACAATTTGTGAAACAACAGGTTTTTTTTGGATGGGGGGGGGCTCCCTTTACAATTTAAATGTAAAATGATTTGTCTTCTTTCAGCTTCAGTTTTTTTACCAGCCCCTTATCTCTGGCACTATTTGTTTTTATTAGAAATACAACCAAATGTACTTTGATACATATTGGTCTGATATTTTCTCATTCAATATTCTTGTTACTATTTTTGTTGTAGTAAATGACTAATACTGTATGAAAATAAACATTACATGTTTAATGAGTGCACAAAAACTCCCCTTCAAACGTTCAGATATTGTTAGGTGAAAATAACATTTCCCCAATATGTCAGGTACATGGTTGTTTTTTATTAAAAGACGTTTTCACTTTGATCTCA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20352 TMED10, ERV25; p24 family protein delta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860944 lncRNA downstream 10447 42590982 ~ 42591311 (-) True G1626267
TU1860905 lncRNA downstream 12890 42586935 ~ 42588868 (-) True G1626231
TU1860929 lncRNA downstream 36356 42564355 ~ 42565402 (-) True G1626254
TU1860886 lncRNA downstream 114784 42486722 ~ 42486974 (-) True G1626212
TU1860880 lncRNA downstream 121820 42476118 ~ 42479938 (-) True LOC110498355
TU1860970 lncRNA upstream 42825 42647589 ~ 42647792 (-) True G1626288
TU1860973 lncRNA upstream 45366 42650130 ~ 42650687 (-) True G1626291
TU1860976 lncRNA upstream 49745 42654509 ~ 42655253 (-) True G1626294
TU1860978 lncRNA upstream 51591 42656355 ~ 42657840 (-) True G1626296
TU1860979 lncRNA upstream 53144 42657908 ~ 42664575 (-) True G1626297
XR_002469743.2 mRNA downstream 30301 42570828 ~ 42571457 (-) True LOC110497913
XM_021574374.2 mRNA downstream 39789 42494458 ~ 42561969 (-) False eml5
XM_036954865.1 mRNA downstream 39789 42494458 ~ 42561969 (-) False eml5
XM_036954866.1 mRNA downstream 39789 42494458 ~ 42561969 (-) True eml5
NM_001160676.2 mRNA downstream 109696 42489857 ~ 42492062 (-) True npc2
XM_021574396.2 mRNA upstream 64272 42669036 ~ 42671065 (-) False erg28
XM_036954869.1 mRNA upstream 64272 42669036 ~ 42671081 (-) False erg28
XM_021574394.2 mRNA upstream 160113 42764877 ~ 42786064 (-) True tgfb3
XM_036953847.1 mRNA upstream 495461 43100225 ~ 43110498 (-) True LOC110498358
XM_036954879.1 mRNA upstream 520670 43125434 ~ 43132494 (-) False LOC110497926
TU1860882 other downstream 131056 42465825 ~ 42470702 (-) False LOC110498355
TU1860762 other downstream 345961 42255235 ~ 42255797 (-) True G1626105
TU1859988 other downstream 751325 41846255 ~ 41850433 (-) True G1625428
TU1859580 other downstream 1406999 41194433 ~ 41194759 (-) True G1625066
TU1859566 other downstream 1439346 41144107 ~ 41162412 (-) True LOC110497865
TU1860906 other upstream 35685 42640449 ~ 42641273 (-) True G1626232
TU1861008 other upstream 154530 42759294 ~ 42838434 (-) True G1626324
TU1861812 other upstream 803963 43408727 ~ 43409109 (-) True G1627068
TU1865759 other upstream 3399001 46003765 ~ 46005877 (-) False LOC110498001
TU1866141 other upstream 4014443 46619207 ~ 46629506 (-) False G1631005

Expression Profile