RNA id: XM_021574384.2


Basic Information

Item Value
RNA id XM_021574384.2
length 1804
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110497916
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42610081 ~ 42619496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaaaaatttgACGAGAAGGGTGAACATTCTGTTTAGCTAAGGATTTTTTAAGACATGTTTCTCAACCCTGACTTCGATTCAATGTCTCGCTGTAGCACTGAATCTCCTGTTGGGGACACCCTGACGTACTATCAGAAGACACAAGACGACTCTATCTCCAGCTCCTCAGCTTCGCCATCAGAGAGTAATGCACAGGAGCTCTGCCCAGACATGGATACACCAGCCACTCCATTTGTTCCAACAGTGACTGCAATTTCCACAACCCCGGATTTGCTATGGATGGTCCAGCCGACCATTATaacgtctctctccccatctctgagTAGCAAACAAACCAATGAAGCAAAGAGCTCTCACCAGTCAACACCCAAAGCGGGCGAGAGCAGGGGAAAAAACACTGGCAGAAAGGGGAAAGCCGAGCAGTTATCtccagaggaagaagagaagaagagggtgaggagagagagaaataaaatggctGCAGCCAAATGTCGCAACAGACGGAGGGAACTCACTGATTCACTGCAAACTGAGACTGATCAGCTGGAGGAAGACAAAGCAGCTCTGCAGACAGAGATAGCCAACCTcctcaaagagaaagagaggctgGAATTTGTCCTCGCTACTCATAAACCTGTGTGCCAAATTACAGAAGAATTGGATTCCATCTTCCAGGAGCCCAGTAGGTCTCCAGACCTCCCCCCCAGCCCGGAGGGGGGTAAACTCCCTGAGGACAGTGCTCAGGAAGCCCCCTCGCTCCAGGACATGGACATCCTCAATGACACGTCCACAGCCATCTCTGGAAACTCCAACATCCTACTCTGTGCCAGTATTGAAGTGAACATCTGTGACCTTGAGCCCTCTTTGGACATGAAGGAGGGTCTCCTGGACAATCTGCTGcccagcatggaggaggaagtccCCACAGAGACTGCCCACTCTGTCCCAGATATTGACCTGAGTGGCTCTCTTGGGGTTACGGACTGGGAAACCCTGTACAAATCTGTGTCTAATGACCTAGAGCCCTTGAGCACTCCTGTTGTGACCTCCACCCCCACATGTAGCAGCTACCTGTCCGTTTTCACATTCTCCTGTCCTGATCTTGACTCCTTTGGAGTGGGGTTTGATGGTCGCAAAAGTGGAGGGGGCAAGGCTGAATCTGTTGATATCCTcaactctccaaccctgttggcCTTATAATGTAAGCATAGGGAGTTGATTGGTTTATCACTTTAGTTGGTTTTCCTGACTGTGATAGGCTATCAGAGACTTTCTGTGGTTTCAGCACTTCAGTTTTATTATTACACTCATTAAATGTTTTTGACTAAGCAAGTATAAACTTCTTCCAGATACAATTGATATAGCTAAGAGCATGGCTATACACTTTACTGATAGGGAGTAAGTATGTTCTGGTTTTAAACGCATGCAGAGGAATTCCAAATAATTGTCATATTTCATATATGTTTGATCTGGTACTAGATCTATGCTGTATTGTGGAATTGACTGTACGGTTTTGTGCTTCAATGGGAATAGTATATCAATAGCTATGAATGTTGTGTTATAGTTCAAGTATACATCCATGTTCGGTAGGTACATACCTCAACGTCATCAACTGTGATTTGACCTCATTGTTACAATGTTTAGAGTTTTCAATGAAAACATCCAGTGCTATATTTATCAAGATGTAAATTATgataatttatttttttaccttcaaTTTTGACTTGTTTGTCAAGTTAAAGTAAAATGAGCATCGATTGctgattgatacattttcaaattAAATATTAATTCAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860516 lncRNA upstream 26890 42589302 ~ 42589684 (+) True G1625888
TU1860439 lncRNA upstream 118123 42497955 ~ 42498451 (+) True G1625828
TU1860421 lncRNA upstream 119292 42495653 ~ 42497282 (+) True G1625813
TU1860433 lncRNA upstream 140781 42475532 ~ 42475793 (+) True G1625823
TU1860432 lncRNA upstream 141326 42475040 ~ 42475248 (+) True G1625822
TU1860552 lncRNA downstream 19035 42638531 ~ 42638756 (+) True G1625915
TU1860558 lncRNA downstream 22481 42641977 ~ 42642356 (+) True G1625918
TU1860559 lncRNA downstream 23082 42642578 ~ 42643263 (+) True G1625919
TU1860563 lncRNA downstream 30349 42649845 ~ 42650111 (+) True G1625923
TU1860569 lncRNA downstream 36397 42655893 ~ 42656209 (+) True G1625929
XM_021574382.2 mRNA upstream 27697 42577784 ~ 42588877 (+) True LOC110497914
XM_021574377.2 mRNA upstream 45580 42564321 ~ 42570994 (+) False LOC110497912
XM_021574387.2 mRNA downstream 1074 42620570 ~ 42628100 (+) True LOC110497917
XM_021574388.2 mRNA downstream 16949 42636445 ~ 42666725 (+) False LOC110497918
XM_021574389.2 mRNA downstream 16954 42636450 ~ 42666725 (+) True LOC110497918
XM_021574390.2 mRNA downstream 51744 42671240 ~ 42765750 (+) False ttll5
XM_021574391.2 mRNA downstream 51744 42671240 ~ 42765750 (+) False ttll5
TU1860306 other upstream 365003 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 579456 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 580630 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 587068 42024608 ~ 42029506 (+) True tmem260
TU1858990 other upstream 606244 42009961 ~ 42010330 (+) True G1624560
TU1861490 other downstream 692344 43311840 ~ 43407127 (+) True LOC110497931
TU1862104 other downstream 1195230 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 1195262 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 1195262 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 1794826 44414322 ~ 44448672 (+) True G1628073

Expression Profile