Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021574387.2 |
| length | 855 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 4 |
| gene id | LOC110497917 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 42620570 ~ 42628100 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09033 | JDP2; jun dimerization protein 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1860516 | lncRNA | upstream | 30886 | 42589302 ~ 42589684 (+) | True | G1625888 |
| TU1860439 | lncRNA | upstream | 122119 | 42497955 ~ 42498451 (+) | True | G1625828 |
| TU1860421 | lncRNA | upstream | 123288 | 42495653 ~ 42497282 (+) | True | G1625813 |
| TU1860433 | lncRNA | upstream | 144777 | 42475532 ~ 42475793 (+) | True | G1625823 |
| TU1860432 | lncRNA | upstream | 145322 | 42475040 ~ 42475248 (+) | True | G1625822 |
| TU1860552 | lncRNA | downstream | 10431 | 42638531 ~ 42638756 (+) | True | G1625915 |
| TU1860558 | lncRNA | downstream | 13877 | 42641977 ~ 42642356 (+) | True | G1625918 |
| TU1860559 | lncRNA | downstream | 14478 | 42642578 ~ 42643263 (+) | True | G1625919 |
| TU1860563 | lncRNA | downstream | 21745 | 42649845 ~ 42650111 (+) | True | G1625923 |
| TU1860569 | lncRNA | downstream | 27793 | 42655893 ~ 42656209 (+) | True | G1625929 |
| XM_036954868.1 | mRNA | upstream | 1074 | 42610081 ~ 42619496 (+) | False | LOC110497916 |
| XM_021574385.2 | mRNA | upstream | 1074 | 42616564 ~ 42619496 (+) | False | LOC110497916 |
| XM_021574384.2 | mRNA | upstream | 1074 | 42616574 ~ 42619496 (+) | True | LOC110497916 |
| XM_021574382.2 | mRNA | upstream | 31693 | 42577784 ~ 42588877 (+) | True | LOC110497914 |
| XM_021574377.2 | mRNA | upstream | 49576 | 42564321 ~ 42570994 (+) | False | LOC110497912 |
| XM_021574388.2 | mRNA | downstream | 8345 | 42636445 ~ 42666725 (+) | False | LOC110497918 |
| XM_021574389.2 | mRNA | downstream | 8350 | 42636450 ~ 42666725 (+) | True | LOC110497918 |
| XM_021574390.2 | mRNA | downstream | 43140 | 42671240 ~ 42765750 (+) | False | ttll5 |
| XM_021574391.2 | mRNA | downstream | 43140 | 42671240 ~ 42765750 (+) | False | ttll5 |
| XM_021574393.2 | mRNA | downstream | 43140 | 42671240 ~ 42765750 (+) | False | ttll5 |
| TU1860306 | other | upstream | 368999 | 42250731 ~ 42251571 (+) | True | G1625710 |
| TU1858946 | other | upstream | 583452 | 42036328 ~ 42037118 (+) | True | G1624524 |
| TU1858998 | other | upstream | 584626 | 42035353 ~ 42035944 (+) | True | G1624565 |
| TU1858971 | other | upstream | 591064 | 42024608 ~ 42029506 (+) | True | tmem260 |
| TU1858990 | other | upstream | 610240 | 42009961 ~ 42010330 (+) | True | G1624560 |
| TU1861490 | other | downstream | 683740 | 43311840 ~ 43407127 (+) | True | LOC110497931 |
| TU1862104 | other | downstream | 1186626 | 43814726 ~ 43816301 (+) | False | G1627319 |
| TU1862103 | other | downstream | 1186658 | 43814758 ~ 43816301 (+) | False | G1627319 |
| TU1862108 | other | downstream | 1186658 | 43814758 ~ 43816501 (+) | True | G1627319 |
| TU1862932 | other | downstream | 1786222 | 44414322 ~ 44448672 (+) | True | G1628073 |
