RNA id: XM_021574393.2


Basic Information

Item Value
RNA id XM_021574393.2
length 6886
RNA type mRNA
GC content 0.50
exon number 32
gene id ttll5
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42671240 ~ 42765750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATTAAAACACCAAAAATCTATTATATTACTTTATCAATTGTTTTAATACTATGCTAGACAATGTAATTCGTCTTGAATATTCCAAAGTATTCCCTGTGTGACATTCTCTGACCAAATGCCCCGATTCAGTAGTACATTGCAGGCATTGGAATGCCCAAGTCCGTTTTTATCCCTCAATAACAACATTGGAATTTTTATTTTACGATGCATATTTGGAATTATAGAAATTCATCACAAATTGGAAGTTGTGCGGCCAAAAACGTCACGTGCTTGAGGACAGTGCGCATGCTCTCGCCATTGGTTGCCAGTCAGTTGTTGTAGTTACAATTAGGCTAGCTACAGGAAGACTTTTTatgatggctagctagctaactgtggTTCTTCGAATACATAAGTTTATCCTATGCTGAAGATTTGGTAGACGGTGAGAGCTGGAAATGCCCACCTTCATAACCCCAGATACCTGACTCAAAGCAGATTTCGTCAGGAGGTACTTCCCCCTTCACTGTGGTGGAAATGCCAACTGTGATCCGGGATAAAGAGGATTCAGAGTCCTCAGAGGACGAGCAAGAGGACCATCCTTGCATTGCCTGGAGTGGCCTCAGTAGGAAGATCCCAGTCCTGGTGTTCTTTGCTGAAGCCATCGTCTCTAAAGATGGAAACATCCGTTCTGTTGGAGAACGGTATAACCTGGCCTTCAAGATTGTGCGCACGGAGAGCCGGCTGGTTCGTGGCTTACTGACCACTCATGGATTCCATGAGATCCATCCAAACAGTAATGACTTCAACCTCATGTGGACGGGGTCTCACCTCAAGCCTTACCTCCTACGCAGCCTTCAAGACTTCCAGAAGGTCAACCACTTTCCCAGGTCATATGAACTGACGCGCAAAGATCGGCTGTATAAAAACATCCAGCGGATGCAGCAGTCTCACGGCTTTAAAAACTTCCACATCGTCCCTCAGACCTTTGTGCTTCCCTCAGAGTACCAGGAGTTCTGTAGTTCTTTCGTCAAGGACCAGGGCCCCTGGATCATTAAGCCAGTAGCATCTTCAAGAGGACGAGGGATCTACCTGGTCAGCAATCCTACCCAGATTCCAATGGATGAGAACATCTTAGTTTCTCGATACATCAATAACCCATTACTGATTGACGaCTTCAAGTTTGATGTGCGGTTGTATGTGCTGGTGACATCATATGATCCACTCACTATCTATCTCTATGAGGAGGGCCTGGCCAGGTTTGCCACCGTGAAGTATGACTGTGGCACAAAGAGCATCAAGAACCAGTTCATGCATCTCACCAACTACAGCGTGAACAAGAAGAGCAGCGACTATGTCAGTTGTGATGACCCTGAAGTGGAGGATTATGGGAACAAATGGAGCATGAGTGCAATGCTGCGGTATTTGAAGCAGGAGGGAAAAGACACCACATTGCTGATGAGTCAGGTGGAGGACCTGGTGATTAAGGCTGTGTTGAGCGCTGAGCTGCAGATAGCCACTGCCTGCAAGATGTTTGTGCCCCACAGGAACAACTGCTTCGAACTGTATGGCTTTGATGTGCTCATCGACTCCAACCTCAAACCATGGCTCCTGGAGgtcaacctctctccctccctggcctGTGATGCTCCTCTGGATCTGAAGATAAAGGCCAGCATGATATCAGACATGTTTTCTATTGTGGGCTTTGTTTGTCAGGACCCCCTGCTACGACAACCCCGCTCTGAACGGGTGGCTCTGGACCCGGGCCTGAAGTACCCAGCCCCCAAAGCACAGAGACCCCTGTCAGCCAACAACACTGACACAGACGGGCCTAAGGAGAAGCCAGGAAGTAAACAGGGGGACAGCACCCTGGGCCTGACTGCTGAGGAGTtgaaagtcctgaggaggataagagaggagcaCGAGAGACGAGGGGGGTTCATCCGAATCTTCCCCACCCCAGAGACATGGGAACTGTATAGTGGTTATCTGGAGTATAAGACATCGATGAACTCCATGTTGGCTAACAGACTTTTCCATGGAAGATTGGGGAAAGCGGTGGTGACCTCAAGATCACGGAAGCTGAATGGTAATGTGCAGCTGCAGGTGGATGTGTTCCACGCGTGTCACGTGATCCAGTACGAGAGGAAGCTGTTGTCGCTGGAGGCGCGGAGGCGGAGGCTGCGCCACCTGGCAGAGCACTCCGCCATGGGGAGGAAAAGAGCAGCGAGGGGTCGCAAGGCCTCCCCTACTGGGACCAGTGACGAGGAGGATgttgaagagggggaggagagggttcaggaggaagaggagaagaataAGAAAGCCCTGGGTTCGTTAGTGGTGCAGACTGACAGTGTGCCCACCTCACTGAAGCGGTTCCACAATGAGGCCCTGTCCTCAGCAGAACCGGCCCGATGCAACACTGCCATTACCAAACCCAAAGTCAATCTGCTCCACATCCTCCAGCAGGGCTGGGACCTCAGTAAGGTCCAGGCTCGGATGGCCTTCTCCTCCTATCTCCTTCGGGTGCAGATGAGGCTACTCGCAGAGAGCAGGACTATCGCTAACTCCGCCTGGCCAGAGAAGGACAATGAGCAAATGGAGCTGGTGATCCGCTTCCTGAAGCGTGCGGCCAGTAACCTTCAGCAGGACATGAGGATGGTCCTGCCCAGTCGCCAGCTCCCCCTCCAGGATCGCCGACGCATCCTGTCCCACCAGCTAGGAGAGTTCATCCACTGCTACAACAAGGAGACAGAGCATATGGTGAAGAAAGTGGAGAAGATCAAAGACCAAGAACATTGTATCAACCCCAGTGTGTTTCAGGAGTTTATTGCTGAGGCAAGTGAAAGTGATCTGGAGGAGGTCCTGACATTCTACACACATAAAAACAAATCAGCCAGTGTCTTTTTGGGAACCAAATGTCGGAGCACTAAACCTGACAATAGCAACAGCCTAGGTTCAAGAGAGCCAGCTACCACAGAGAACCAGAAAACTTTGCCCATGGCAAAAGAGGGCTCCAGCGCCTCTGAGTCCTCAACGTCTGAAGTCAAAAACAGCACAGACCAGGCTAGTGTAGTCCAACCCACTGCTGACCAACCCACTGGAGAGCAACCGGCTGCAGCCCTCAGAAGTAGTAAACAGCCTGAGGTCCAGGCCTCCCAGCACTCCTCCAGCTTTCCAGCTGCCTTAGACTGTGGCCACATCCACCTGCAGCACTACTCTCACCCCCAGAACCCACCCCAGTCTCTTCCCCTGCACTGCCCCCCACCACCGCCCCCATCTCAGCCCCCATCCTACGACCAGTCTCACTTTCGCCTCCACTCCCCTCGCCAGCCAGAAACCCCTCCACAGCCCCAGGCCTCTGTGTTCTCCTCAACCTCGACCCTTGTCCCCCAGCCCCCTCGGGTAATATGGGCAGCTGCCCGCTCTGGTCCCACCACAGTCTCAGCACCACCAGTCTCCCAGGTCCTAAGGCAGGTCCAGTCGTTTACCTCCACCTCCTCTGCGGCTGCAGCCTCGTCCTCCATGCCTGGTGCCATCCACATCTACAGCCAGAAGATCTCCAGGCCCACCTCTGCAGGTCAAGCAATCAGAAGGACGCCCTCCAGCCGGCCCAGACCAGATCCAAATGGGGTCTTTAATAAGGACCTGGACTCACTGCCTGCTCAGGCGCAGTCCAACCAACAAGCCATAGTCTCAGCCCTGCAGAAACTGGCAGAGAAGCAGGCTGCCCGCCAGTACAACAGCTCCAGCCACATCAGTCTCCTAACACAACACTTGACCAACCTGAACCTGACTAACAGGGTGCTGAGCAGAGGGGCCATCACCCTGACCCCAGCAGTGCGACATGGTCATGGGACTGGAGCTGTGACCCAGCGGCCTGTCAGGGCTGTCCACTCTGACACAGGGCCCATCCACAGCACTACTGGCCCCAGGGCGCCGAGAGATGAGGAGGGTCTTTGGGATGGGGAGACCCAGAGTGCCTACAACCTGGTGAGAGGCGTCAGCCCCCAGCAGCGCTACCAGCCCATCCCAGGCAGCTACCAGCTCCAGTTCGCCATCCAGCAGCTGCAGCAGCAGAAGTTCCAGTCCCGCCAACTGCTTGACCAGAGTCGCACCCGCCACCAGGCCATGTTGGCTGCTAAGGCCATGATGCCACCCTATCCTGTGACGGCTCCTTGGCCCCAGGCTCCCACCGGCCCATCCTCCTCCAGTCTACCAGTGACCCACCCAGGCCGCCAGAACCACAGCCAGGCCTGCGCAGGCCCAGGACACATCCTCAACCCCAAACCACCCAGCAGTGCCAGGGAGGGCCTGGTCAGGAAGACAGCCACCCAGCGCCTCAGCAAACAGACCTCATCAGAACGCCCAGCCAATGGAGCTCTGACGTCCAACTCGCAGCATGTGGTCTACGAGGCCGTGTGTGGGAAAGCAGGTCTTTCTGGGTACAGCAAACTGTTTCAGGGACAGGGGTCCAAGCTCAGATGACAGCGAGATAACCAGGGAAAGGACGGGAGCTATGGCACACCAACTTGCCGACAGAGGTGTCTCTGCATGTGACCACAGGTGCATGCTGGGTAGGAAACAACTTAAGGATCCCGCTGCTGTGACTGTATGTCTGACACACACCAGGCCCTGTTACTGCTTCTAAATGAAGGAGACATGCAAGAGGATAGCCTGCCCTTTCAGGAATCCCTGGGCCTGACGCAGGTCGGGATCTGTTGCACAGGCCAAGACTTTCCAGTGGCTTTCTGTATCACCCCACCCCCCCACAGCCCCAACTCCATAACCCTATCGCAGCAGTTGTCATCCCTCATTCTccccatgctgtctgtctgtgtctatgcCATGGAAAAACTTCAGTGACAGACACCCAGCAACAGCTGGTTCCCACCAGAGGCCCCATGGGCACCATCACTGGAGCTCAGAGTATAGTCTTAATACATTATAGCAATTACTGTACAGGCAGAGAGATGTGCTTTATCACCCCCTTCTGTCTCATTTTAAACATATGTTTGCGGCGTAGGGAAGTTTGGGTACAAGAGAGAAACTGCAATTGACCAATATTTTAGAGATTGCCTCAATGATCTTGTTTTACTGAGAAATGAGCAAGTAAATGAAGTGTTGTCTGGTGAGGCAGGCTTGATGTTGTGCTTGGGAACCAACCATCCCATTCTCTCATGAATGAATTTATCAGAGAGTATCACAAACAGTTGCCAATCCAGTTATTTTTGGTCCTTGTTTATGTATACTGATGGGTTTCCTCTCTCTTTGTGAAGACTTGTTACATTGGCTAGCAGGACACTTGAATGAGTTGTATTGTTGCCTTTACAGTTCTCATGTTTGCACTCCCTTGTTTGTCTATACTCTACAGTAACATTATATACCAGACTTTTCCCACTATGAACTGTTATACTGCCATTCTTTGTGCGCTCTGGCTTAGTAATGTGCAGTATACTGTTAAAcctgcacagtaatgtttttaACGCAATTGTATGTTACAATACCTTGCAATCAGTTGTTTCAGACTGTAATGCAATGACAATGTTGTCCATTTGTAGTGTGTGCTCTTTTACAACTTGAGGGAAAAAGCTATTGAATGTGTCTCATGGCCCCTGTTCTCAGAACATGGTGATGAAGGGGTCTACCTATGCAATGCAATCTTTTGTATAGTAAACATACTCAACcctcctttccacagagggttctacctggaacccaaaaaggttattcaaagggtcctgctatggggacagctgaagaacccttttgtcTAAGAGTGTATGCCAGCATGCTGTTATCGAGTACAAACTGGGGAAGAACATATGCAGCAGTGGGTTGGGTCATATATTATTGAAAGGGAATACTAAGTTAGTGTGTTAGCCTTTTGCATGTGTCTCCCCAACTGCTGTATTGTGAGGGCCAAACTTTGGGAACCATCAGTGACCATTTGCAAGCAAGACCATTAATATCAGTAGCAGCCAGTGTCGTCTATATGTACTGTAAATTGTTgcattgtatatattttttatttatttaaaggtTGTCAATCAAATCAGTTTCCTGCACCTCAAAGTGAACTAGGGCCTAGTTCAATCAGATCCAGCGTTAACTGGCGCTAGCCGACACCATTATAGCTGATGTTGTGGCGGGCTCGGGAGTGAAACTGCATTgagctgtcaaatcggtgagcagctgctcttgtggTGATTGTCACAAAGCCAAACCCATCCCACTCGCATTAGAAGTTCAGAATGAGAAAGTGTATTCTATATAGAAATAGTGACGTtcaaattgaaaatcattaaacaaaaatgaggatttctatcagcctaatggaggtgtagactacatctcacattccagtgtttgaACTTGTAAACAACGCTGCATGGGAATCATTTCAATGCGACTccatgcagccaatggcaatgtccactttcggtataatgccaggagccgTTGTGGATTTGAGCGCTTTAACCtagttccacctccgacacgTCAAAACATCATCTATGCGGATTTTGGCTAAAGATGATCTGATTGAATCTGGCTCTTCATCACTAGGATCTCAATATGGATAGCGGTTGAGCTTGGAAAAAATGCATAATTTTTACTGATACCCACAAATGATGATTATCTAAAgattttgaaaaaatatatacatctgTTTGTCCAAGAccatttttaatttaaaaaagtgTTTAAGAGTAATAGCAATAAACTTTTACAGTTTGTGATCTAGTGAAGTGTTCACCTAGTGACATACATTGTCTTGTACAACAGAAAAGTCAGCTTCAtttaagaaaaaaatccagaaaacatGATTCTGTTGCATAACAGAGGTAAACATAACCATAAAGATACTTTGTTGAATAAAGGTTGTTTTCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860547 lncRNA upstream 2406 42667520 ~ 42668834 (+) True G1625910
TU1860575 lncRNA upstream 5714 42665015 ~ 42665526 (+) True G1625935
TU1860574 lncRNA upstream 6247 42664764 ~ 42664993 (+) True G1625934
TU1860569 lncRNA upstream 15031 42655893 ~ 42656209 (+) True G1625929
TU1860563 lncRNA upstream 21129 42649845 ~ 42650111 (+) True G1625923
TU1860633 lncRNA downstream 41065 42806815 ~ 42809660 (+) True LOC110497923
TU1861115 lncRNA downstream 85136 42850886 ~ 42851160 (+) True G1626423
TU1861122 lncRNA downstream 89589 42855339 ~ 42855558 (+) True G1626430
TU1861126 lncRNA downstream 93936 42859686 ~ 42859904 (+) True G1626434
TU1861132 lncRNA downstream 97603 42863353 ~ 42863580 (+) True G1626440
XM_021574388.2 mRNA upstream 4515 42636445 ~ 42666725 (+) False LOC110497918
XM_021574389.2 mRNA upstream 4515 42636450 ~ 42666725 (+) True LOC110497918
XM_021574387.2 mRNA upstream 43140 42620570 ~ 42628100 (+) True LOC110497917
XM_021574385.2 mRNA upstream 51744 42616564 ~ 42619496 (+) False LOC110497916
XM_036954870.1 mRNA downstream 25205 42790955 ~ 42810075 (+) False LOC110497923
XR_005037745.1 mRNA downstream 25205 42790955 ~ 42811478 (+) False LOC110497923
XM_036954871.1 mRNA downstream 25864 42791614 ~ 42810075 (+) False LOC110497923
XM_036953822.1 mRNA downstream 96902 42862652 ~ 42877342 (+) False LOC110498356
XM_036954877.1 mRNA downstream 216495 42982245 ~ 43039659 (+) False LOC110497924
TU1860306 other upstream 419669 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 634122 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 635296 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 641734 42024608 ~ 42029506 (+) True tmem260
TU1858990 other upstream 660910 42009961 ~ 42010330 (+) True G1624560
TU1861490 other downstream 546090 43311840 ~ 43407127 (+) True LOC110497931
TU1862104 other downstream 1048976 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 1049008 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 1049008 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 1648572 44414322 ~ 44448672 (+) True G1628073

Expression Profile