RNA id: XM_036953847.1


Basic Information

Item Value
RNA id XM_036953847.1
length 2847
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110498358
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43100225 ~ 43110498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCGTATAACCCGACCCGACTCTACTCAACGTAACAGAGCAGTCTGAGGTCCAGTCATCTCATACTGACTCACTCCAAGGTGTCCTGACACAGCTAGTAAAAAGGTTGCACAGTGAGCATGAACCTGAGCCTCCCTGACCAGAACATGCACAACCCCAGTGACAGTGGTCTGGAGGATAACAAGGCTGGGCTCATGATCCCCTGCTTCCGTAGAAACATGTACGATGAGCCTCTAATTTCATACTCCAATGGATCCATCATCTCTCACCTCCTGCGCAAAACCATACACAACAAGAAGGCTCTGGACGAAAGCCATTTCTACCTACCCACATCGACTGTGTCCAGCTCCACAATGGCTGACTCCAGTCAGGAGGACCAGAGCAGTGTCTCATCCAAGGACAGCGCGGCAGAGTCTGCATCCCCAGGCAGGCACCTCTTGACCAGGGTCAGCCCTGAGGAGGACAGGCCCCTGAGTGATCACCTCCAGGCCAAGCGTGCCCGTGTGGAGAACATCATCCGCAGCATGGCGGGGTCTCCCAACAGCAGGCTCCATGGGGACAGTGAAAGGGCTGAGTCAGACACCAGGGAGGCTAGAGAGGCCTACAGGGAGAACAAACGTAAGCAGATGCTCCTCCAGCATCAGGAGCACAGTCTCTATGCGGCAGCTCCAGCTAACAgaggcagcagtagcagcagcagcagtaaggATGAAGAGTGCCACAAACTGAAGGTGCAGCTCCAGAGCATGCAGAGAATCCTGAGACAGCTCCAGGATAAGTTCTTACAGGTTtataaccaggacgacgctgtgCACGAAGACAGAGATGACACAGGCACAGCCAGCCCTCCTGAAAATGATGACACCACACCAAGCAAAGAGTCTGGGTTCATGTTCCGTATAAACATGGATGAGGAGTTAGAGAGGAAGCATGACAGTGGTAAAGGGGGCTGTAAGGacagagtgaagacagacagaagTTATCTGACACATCAAAGGGGAGGCAAGAACCTACAGGAGACTCTGAAGCATGAGCTCTCCAAAGCGATGAGTGAGAGTGTAGATAGGGTGTTCAAGAAACTCTCCTCCACAGGGCTCAACCAGTCATCTCATCAGCGCATGTGTCACACCCCGGAGCACGTCATTATGGGAGCTGAGAGGAAGAGCCAGGCACCCTGTAACCAGGAGCAATCACACACTGAGGAGCCAGTCAAACCCCAGGCTCTAGAGCACTATGAGAGAAGTGAGGCTTGCAGTCCTAAGGATCAGACCGAAGCTCTGTCTCTAGTGGTCCGTAAGCCGCCCCTGAGCCAGCTTAGCTCAGTTACCCCGACGGTGAAGAGGCCCTATCCCTTACACCAGTCTCCATTCCAGTTCAACTACAGCACACCTCTCCATGACAGTCAAATGCTGGAACACCTCCTCAAATACGGGCCCCACACTAACTTTGGAGGTCTCCCATGCATGCCCCCATCCATGGACAGAACGTCACCAAACTCGGTGGACCTACCCTGGTCCATGAGGTCCAAAGTGACATCCAGCCACCTGGCCCACCACCATCACCCATCAGGCCTGGGTCCAGTGACCGTGGACAGTCTGTGTCTCCCTCATGTCAAGATGGAGTGTGGGGACCTGCAGAGCATAGCAGAGAGAAACTCCTACATGTCTCTCAacatccagcaaGGCCTAACCCCCAACCATCTGAAGAAAGCTAAGCTGATGTTCTTCTACACCCGTTACCCCAGCTCCAATGTGCTGAAAACCTTCTTTCCAGATGTCAAGTTCAATCGCTGCATCACCTCTCAGCTCATCAAGTGGTTCAGTAACTTCCGGGAGTTTTACTACATCCAGATGGAGAAGTTTGCCCGCCAGGCCATAGTGGACGGGGTCAGGGATGTGAAAGACATGTCCATCAGCAGAGACTCTGAGCTGTTCAGAGCCCTCAACATGCACTACAACAAAGCCAATGACTTCCAGGTTCCTGAGAGATTCCTTGAGGTTTCTGAAATTACTCTTCAGGAGTTTTTCAACGCCATTTCAACTGCTAAAGATTCTGACCCCTCTTGGAAGAAGGCAATCTACAAGGTCATCTGTAAGCTGGACAGTGATGTCCCAGATGAGTTCAAATCATCCACCTGCCTATAGACAGAGCAAGCAAAAGCCATGCTCAAGGAAGGAAGGACATTTTGAATTAATTGGATTTTAGTGAGGAAATTCTGGAAAAAAACATGATGTTGTGAATGACGTATTATACACTGCAGGAACCTACTTATGGCACACATTTTTTACCGTCTCAGTAAACACATTATAATACTGCTTCAGCTCTCTCCTATGAGTTTTTGGTAACACACACTTGACACcaaggtcataaccatgtcataatatctCACAACAGCTgattatgacacctacataagagggTCACAACCCACATGTATTCAAAATCTTTTtttttccctgccaagaagtttccttttTTTCGAAAGTTTGTTTCTTCAATATTCTGTTGTTGTTATGAATTCTTTAGTCATGTTTATTTCTccatcatattttaaataacttgtggaaaatacactttatgacactgtcatgaagcattatgaccatcataatcatataagccaaaaaggcctatcacgtacatgcccaGTCATCAtcaacagagcattggggtaggtgcatgtctgacatcaatgtttGCGCAATTACAATGCTAATTCAATAtgttcaattaaaaaatatatatatatatatatataacataaacatactgttgacacgtAGGCTATGGTGttatggaatgttttgccttgtgtggtaggtttttgccttgtgtggtaggtttttg

Function

GO: NA

KEGG:

id description
K20211 PROX1; prospero homeobox 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1861349 lncRNA downstream 58497 43040149 ~ 43041728 (-) True G1626654
TU1861350 lncRNA downstream 60372 43039183 ~ 43039853 (-) True G1626655
TU1861346 lncRNA downstream 66507 43033112 ~ 43033718 (-) True G1626651
TU1861340 lncRNA downstream 74677 43025274 ~ 43025548 (-) True G1626645
TU1861338 lncRNA downstream 76758 43023236 ~ 43023467 (-) True G1626643
TU1861696 lncRNA upstream 76527 43187025 ~ 43212755 (-) True G1626961
TU1861694 lncRNA upstream 95373 43205871 ~ 43206971 (-) True G1626959
TU1861695 lncRNA upstream 97205 43207703 ~ 43208758 (-) True G1626960
TU1861693 lncRNA upstream 98718 43209216 ~ 43210618 (-) True G1626958
TU1861761 lncRNA upstream 196182 43306680 ~ 43320208 (-) True G1627022
XM_021574394.2 mRNA downstream 314161 42764877 ~ 42786064 (-) True tgfb3
XM_036954869.1 mRNA downstream 429144 42669036 ~ 42671081 (-) False erg28
XM_021574396.2 mRNA downstream 429160 42669036 ~ 42671065 (-) False erg28
XM_021574383.2 mRNA downstream 495461 42601758 ~ 42604764 (-) True LOC110497915
XR_002469743.2 mRNA downstream 528768 42570828 ~ 42571457 (-) True LOC110497913
XM_036954879.1 mRNA upstream 14936 43125434 ~ 43132494 (-) False LOC110497926
XM_021574401.2 mRNA upstream 14936 43125434 ~ 43134526 (-) False LOC110497926
XM_021574402.2 mRNA upstream 14936 43125434 ~ 43135492 (-) True LOC110497926
LOC110498359 mRNA upstream 25702 43136200 ~ 43139430 (-) True LOC110498359
XM_021574403.2 mRNA upstream 31024 43141522 ~ 43148464 (-) True LOC110497927
TU1861008 other downstream 261791 42759294 ~ 42838434 (-) True G1626324
TU1860906 other downstream 458952 42640449 ~ 42641273 (-) True G1626232
TU1860882 other downstream 629523 42465825 ~ 42470702 (-) False LOC110498355
TU1860762 other downstream 844428 42255235 ~ 42255797 (-) True G1626105
TU1859988 other downstream 1249792 41846255 ~ 41850433 (-) True G1625428
TU1861812 other upstream 298229 43408727 ~ 43409109 (-) True G1627068
TU1865759 other upstream 2893267 46003765 ~ 46005877 (-) False LOC110498001
TU1866141 other upstream 3508709 46619207 ~ 46629506 (-) False G1631005
TU1866265 other upstream 3719836 46830334 ~ 46830650 (-) True G1631120
TU1867475 other upstream 4805797 47916295 ~ 47980466 (-) False G1632192

Expression Profile