RNA id: XM_021574410.2


Basic Information

Item Value
RNA id XM_021574410.2
length 2088
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110497933
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43483464 ~ 43490666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCGAGTGATACATCGTGGCTAGTGCACTGGGGACCGACCTGTGAGCCGATACAAATAGGGAATAGGCCAACTATCGAAGACACCATGACAGGTAAACAAGGAGCTGCGGTGCTATCGGAAACGTTGAATATATCCAAAACGTCCTCTATCGGTGCTAACGGAGGGAATAACAGCCTGCACCAACAATCAAAGAACAGCGCCACGCACCCTCCCAGATGCACGGGATTCGGGATACAGGAGATTTTAGGGCTGAATAAAGAGCCTTCGGCGGCCCCGAGGAGCGCCTTGCAGTCGCTGCCAGCTGGGGCGCACCTGCTTGCCGCCAGGTCAATGCTTGGCCCCGCTGGTGTAGGAGTTGGGATGGGATTAATCGGGCCTGGAGGGATTCCGTCATTCTACAGGCAACCAGCGTTTTTGGAGGTCCTGCAGGATGCGCAGAACGTTCACTTGCAAACCCACAATAGAACTGTGGGACATCTGGACCACAGTCAGTCCCCCAGTTCAGACTCAGAAGATGTGTCATCAAGCGAACGAAAACTCTCAAAGAACTCATTAAGCCAGAGCAAGAAACGGAAGAAAAGACGGCACCGAACCATATTCACATCTTACCAGCTCGAGGAGTTGGAGAAGGCCTTTAATGAAGCTCACTACCCAGATGTGTATGCAAGAGAGATGCTGGCTATGAAAACAGAGCTTCCTGAGGACAGAATACAGGTCTGGTTCCAGAACCGCAGGGCCaaatggaggaagagggagaagtgCTGGGGTCGCAGCAGTGTGATGGCAGAGTATGGGCTGTATGGAGCCATGGTCCGCCACTCCATCCCCCTACCGGATTCCATCCTCAAGTCTGCCAAGGATGGCATCATGGACTCCTGTGCCCCATGGCTGCTTGTTCAAGATGGCTTTCCAATCAGCAGACGCTTTTCTAAATCCGAATACCCACAATTCTTTACAGGGATGCACAAAAAGTCCATGGAGACCACGGTCGTCCAGCCAAAAGGGAAGTCCGATGTTCCCCAGCAGCCAGCCATTCAGAGGGCTGAAGAGTGCGACgtggaggagaagagggcggAGGGCAAGTcacccatctccaaagaggaactgcGGGAGAACAGCATCGCAGCACTCAGGGCAAAAGCACAGGAGCACAGTGCCAAGGTGCTCGGGACTGTTACATGCGAGAGATCAGAGAGCAAAGTGGAGAGACAGGCGACAGAGGAAAAATCTAGTGGCCCTTTGAGTCCAGTGGAAGAGCCCAAGAGTCCATAGACCCTCACTTTGTACAGACTTTGCAGTGCCCTTGACTGTGCTCTAAACATCTGTATGGACTCAACTAGATTGATCAGTATTACAGTGTTCTCTGAGAGGTTTTTACATGTTGAACATCCTAGATCTCTATTATACTGTTTTAAAATGACCTGCTTTATACTGGTCTTCCTATTGGAAAGATTAAATATctacatttgtattttattgacTAAGAAAAACCCCAATGCACTTTCTGTCTTTCTTACTCACTGACATTCATACAAATATTGATGCTTACATATGGTTGAAAATGGTTTAATATGGGGTTAGCAGTCCATACAGATGTATATTGCTGATAACCCCTATAACTAGAAGATACCCACTTTACACATTTCTATCATTGAATATTCTTAAACTACTAATTCAGTGTGCAAAGTGCATACTTGTGTTTGTTATAATGAACCAATTAGGACATTTGTTGATATATAAGTTTGTTGATATATAAGTAGCCAATCTCTgaaactatactgtactctatattgAATTCACAGCATCCATAGTGTTGATGCTGACTGTGTTTCTTGTCTAGTCGCTCCACTGAAGCGACTAGACATCTGTGGGATGATGATGTACGAAAGGGAAACCATTATTCCACTCATTTGGAACACACCATAATTAAAACGTCTTACATTGTTCTTATGCTGTATATAATGGAGAAAAAGACGGCTCACAAAGGCACTGTTAAAATATACTTTCATGTAGTCTTtaaatgtttgtgtttttgtttcacaGTCTGTATAGTATGCAATACAAAGTATTAAACCATTTTTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1861592 lncRNA upstream 2237 43480978 ~ 43481227 (+) True G1626877
TU1861563 lncRNA upstream 35743 43446287 ~ 43447721 (+) True G1626848
TU1861551 lncRNA upstream 60727 43422518 ~ 43422737 (+) True G1626836
TU1861516 lncRNA upstream 132889 43344516 ~ 43350575 (+) True G1626801
TU1861467 lncRNA upstream 171681 43279827 ~ 43311783 (+) False LOC110497931
TU1861600 lncRNA downstream 3577 43494243 ~ 43494481 (+) True G1626885
TU1861607 lncRNA downstream 13332 43503998 ~ 43504418 (+) True G1626892
TU1861608 lncRNA downstream 14916 43505582 ~ 43505804 (+) True G1626893
TU1861904 lncRNA downstream 39843 43530509 ~ 43530720 (+) True G1627148
TU1861913 lncRNA downstream 45386 43536052 ~ 43536262 (+) True G1627157
XM_021574409.2 mRNA upstream 8796 43448731 ~ 43474668 (+) True LOC110497932
XR_005037607.1 mRNA upstream 37715 43443333 ~ 43445749 (+) False LOC110498578
XR_005037608.1 mRNA upstream 37715 43443333 ~ 43445749 (+) True LOC110498578
XM_036954882.1 mRNA upstream 43436 43279273 ~ 43440028 (+) False LOC110497931
XM_036954883.1 mRNA upstream 43436 43279273 ~ 43440028 (+) False LOC110497931
XM_021575233.2 mRNA downstream 92981 43583647 ~ 43587510 (+) True LOC110498579
XM_021574415.2 mRNA downstream 137459 43628125 ~ 43635023 (+) False LOC110497936
XM_021574416.2 mRNA downstream 137459 43628125 ~ 43635023 (+) False LOC110497936
LOC110498580 mRNA downstream 147813 43638479 ~ 43643478 (+) True LOC110498580
XM_021574417.2 mRNA downstream 193592 43684258 ~ 43694931 (+) True LOC110497938
TU1861490 other upstream 76337 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1231893 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 1446346 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 1447520 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 1453958 42024608 ~ 42029506 (+) True tmem260
TU1862104 other downstream 324060 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 324092 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 324092 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 923656 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 1192696 44683362 ~ 44748925 (+) True G1628486

Expression Profile