RNA id: XM_021574416.2


Basic Information

Item Value
RNA id XM_021574416.2
length 3949
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110497936
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43628125 ~ 43635200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACACCCTTCATTAAGAAACAGAGTGCTCTGTGACTGATGTCCTGCCATATTTTCATAACAATATTGGCGCCACCAAAAGCTTTCTGTATAAGCAAAGCGCAAGAGTTGCATCGACACAACGCCAAGAGAAAACACATTTTCAGCAGGATCAAGATGGAAGGTCAACGTAAAGACAGAAGGATGAATAAACTGTGGATATTGACGTTACTGTTATGCGTTTGACCTGCATCTCACTGTCTGGATAACAAGGTTTCTCAACTTCTGCGCGTTTTGGATTGCGGAGCTCGGTCTCGCCCAAAAAGGTTTTGAAGAAGGATTTATTTATTTCTAATTTCCAAACTTCATATTTCATCATCACTGCTTGGAATAAGAGCCCTCTGTGGAGAACAGGTTATTTTTCAAAGGATACGAACCGATCTGTGGAAAAGAATGGCAACTTGGTTTACCTTTATCATCGCAATTATTATAACGATTTTTAAGCAGGTTCTGGGATCTGGTGTATTCGAGCTTGATCTTCATCAGTTTCAGAATAATAGAGGTTTGCTGGCGAACGGCGTAGCTTGTAGTCCGGTGTGTAGGACTTTTTTCCGAGTTTGCTTGAAGAACTACCAGACCGTAGTGTCACCAGGTGACTGCTACTTCGGCAGTGTCGTTACACCTGTACTAGGCACCAACTCATTCAGCGTCATGGAGGACGGCACGTTCACTAAACCTATTCGCCTGCCACTCACCCACTTCGCATGGCCGGGCTCGTTTTCTCTAATCATTGAAGCATGGTTTTCTCCTTCAGCGGATCTACCTGAAGATACAAACAACCCTGCTTTATTGATTAGTTATTTTGCCATTCAAAGAAAGTTGGAAGTAGGAGATGAGTGGTCCCAGGATGTGCAAAGTGTGAGGCAGACGGAGTTAAGGTACTCATACCGGTTCATCTGCCATGCAAATTACTACGGGGACAGTTGTTCAAAAATATGCGCTCCAAGAGACGACCGTTTTGGCCACTACACCTGCAACCCTGACGGGCAAATATCATGTCTACCGGGCTGGAAGGGACAATACTGCGAAGAACCAATTTGCCTTGAAGGGTGCAGCAAATTAAATGGAAATTGCTCAAGGCCAGGACAGTGTGTATGCAGAGAGGGCTGGCAGGGCACCTTCTGTAATGAGTGTAAAAGGCATCCATCCTGCAAACATGGCACTTGTCAGCAGCCCTGGCAGTGCACCTGCAAAGAGGGCTGGGGAGGCCTCCTCTGTGACCAAGATCTGAACTATTGCACCCATCACAAGCCGTGTCGTAATGGGGCCACTTGTATGAACACAGGCCAGGGGAGCTACACCTGTACCTGCCAGCCGGGCTTCACAGGGGATAAGTGTGACAGCGAGGTCAGGGAGTGCGACAGCCAGCCCTGTCGGAACGGAGGCCAGTGCTTGGACCTTGAGAACGGCTATAGGTGTGCATGTCCACAGGGGTTCGAGGGGACGCACTGCGAGCACAGAATGCTGACTTGTGCCGATTCACCCTGCTTCCACGGGAAGTGCAGAGAAAGGGACAACGGGCGGAGCTACATGTGCGAGTGCCCAGGGGGCTTCACTGGACTCAACTGTGAAAAGAAAGTGGACAAATGCACCTCCTTGCCCTGTACAAATGGTGGACGTTGTGTTATCCACGGCACCACACGTTGGTGCAGCTGCCGCTCAGGCTTCACCGGCCCACGCTGCGAGATCAACATCAACGAGTGTTCCATGAACCCCTGCGCCAACGGAGCCAGCTGCATGGACCGCATCAACGACTACACCTGCATCTGCCCCCTGGGCTACACCGGCCGCAACTGTGACAAGCCCACTGACAGCTGTGCCTCCAAACCCTGCCTGAACGGTGGGACCTGCACCAACGGGGCCAAAGGCCAGCCTGCTGACTGCACCTGCTCAGCCCACTTCAGCGGCACCCAGTGCCAATACTACGATGTGCCTTTACTCATcccccccagccccagccccagccctgtcAGAGAGACCCAAGACAGGCTCAACTGGGCAGCCATCTGTCTGGGTGTGGGCCTGGTGGTGCTCCTGGTGCTGATCTGCATGGTGGCCATGGTCCTGCGCCACATCCAGCAGCAGAGGAAGAGGGAGCAGGACTCAGAGACCATGAACAACCTTTCACATTTCCAGAAGGAAAACCTCATTTCTGACCTGCAGCTGAAGAACACCAACAAAAAGGTGGTCCTGGACCTGGAGGTGGATTGTCTCAGGGAGAAGTCCCAAAACCACAAACACATCAACTACCACTTGGACAACAAAACCTTCAAGGAGTACAAGGATGAGCCGTCGCAAGAGGATAAAGACGAGAACTGTAAAAAGACGATAGAGGAGAAAATGCCGTTGAGTAGAAAGTACAGCGAAAGGCCAGAGTGTAGGATAGCAACGATATGTTCTCCAAGAGATTCCATATACCAGTCTGTGTTTGTGATAGCAGAGGAGAAAAATGAATGCGTCATAGCAACTGAGGTATAATACATGGAGGGTATCAGACATTCTGAAGAATGGATATCTTCTGGACTGTTTACAGTGTAGAAACAGACAGGGATTTATTTAACTGTGAATTGCTGCTCTTGAAAACTTGATAACTGGACCGAGCCGGTGTGCTCTATGAATGCAATAGGACTCAAACTACAGAACTTTGTTAGAATGTAAGGACTGAACAGACTGTGAGAAATAATACACAACTTGGACTTTTGGATGTTTCACCGTCAGGGTGTACTGACAGATTCAGCCCCTTGACAGGACTTGTCTGACCATATCCATGGAAAACAGGCCTATGTGTTTATGCCACCTTGCCCATCAGCAGGACGAGAGGGCTCTGTCTGGAGATACTCCACCTTATTTTGATAATCAGCAATCagcaaccaaccaatcaacttACTGCCAACAAGACTGTGGAAGAAGCCAGCTACTTCCATTTACCCTGGTGATGTGCTACAGTATGCAAAAAAGGAGACTTTGTTTAATAAACTTTCAAGGAGATTAAAAAAATACTAGAAACGGTTCATTTTTTGAGAATATTTGAGACCCAGGCCTATGTCAATtttgtaaattattattattattattattatttacataaAAAATGTTAATAAAGAATGTATGCATCCCGAATCACAGAGCCTTAAGTATGGGTTATAGAGCTTGATACCCTGCTTCTTCTTGGATCCATTGCACAACTAAAACTGAAGGGAAAATACTTTTAAGAGAAAACAACTGATGCAATAAATGACGTAGTGCCAGGGGGATTCAAGAAGAAGCATTTTTACTTCTTATTATGCAACATTGCCCAGAAAtgaaaacaaagaaaaacaaaaGTGACTATCATACCAAGGACGCCTATAATTAAAATTGACATTACTGAACcaataatgtttttttaaagatTAGTATTTCACTAGTTATTTAAATATTATGAAGCACTGGTCTTTCTATTATGTTTTATACGattattttgtatataatgtatatttaTAAATTTAGAAGTCGGTGTACAACGGTTTTCAATTTGATGCCCAAAAAGTTGAATTtattttaatgtttaatgttGTTGTGATTGTTGTTTTTTAAACAATGAAAACATATCTGGTACACTGTTTGTTGGTTTCATGTTGAGTAGAAGTGGTCAACTATAGAACTGTCAATTTGCCTAGATATTGGAATGATTAAGAACCTTCCGTTGAAGTCCATCCCCTGTTGTGGAAATGGATTCATTGTCTAGATGATGTATGACCTTGTAGCAGTTCTAGTAATCACATGCATACGGTGGTGACTGGTGagtcaatgtgatgtgaaatcaATGTGCACGCAATCATTTAGTGGACAGTATTGTATTTGACAGCCGTGTGAGAAATATGGACAAaaggtatatataaaaaaaattgaataaaaATGTTGAAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1861972 lncRNA upstream 31806 43595954 ~ 43596319 (+) True G1627212
TU1861913 lncRNA upstream 91863 43536052 ~ 43536262 (+) True G1627157
TU1861904 lncRNA upstream 97405 43530509 ~ 43530720 (+) True G1627148
TU1861608 lncRNA upstream 122321 43505582 ~ 43505804 (+) True G1626893
TU1861607 lncRNA upstream 123707 43503998 ~ 43504418 (+) True G1626892
TU1862144 lncRNA downstream 156675 43791698 ~ 43792446 (+) True G1627353
TU1862158 lncRNA downstream 177848 43812871 ~ 43813077 (+) True G1627367
TU1862102 lncRNA downstream 179570 43814593 ~ 43816141 (+) False G1627319
TU1862101 lncRNA downstream 179703 43814726 ~ 43816141 (+) False G1627319
TU1862100 lncRNA downstream 179735 43814758 ~ 43816141 (+) False G1627319
XM_021575233.2 mRNA upstream 40615 43583647 ~ 43587510 (+) True LOC110498579
XM_021574410.2 mRNA upstream 137459 43483464 ~ 43490666 (+) False LOC110497933
XM_021574411.2 mRNA upstream 137459 43483467 ~ 43490666 (+) True LOC110497933
XM_021574409.2 mRNA upstream 153457 43448731 ~ 43474668 (+) True LOC110497932
XR_005037608.1 mRNA upstream 182376 43443333 ~ 43445749 (+) True LOC110498578
LOC110498580 mRNA downstream 3456 43638479 ~ 43643478 (+) True LOC110498580
XM_021574417.2 mRNA downstream 49235 43684258 ~ 43694931 (+) True LOC110497938
XM_036954885.1 mRNA downstream 60199 43695222 ~ 43735408 (+) False LOC110498362
XM_036954884.1 mRNA downstream 62102 43697125 ~ 43735408 (+) True LOC110498362
XM_021574434.2 mRNA downstream 292049 43927072 ~ 43931372 (+) False LOC110497947
TU1861490 other upstream 220998 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1376554 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 1591007 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 1592181 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 1598619 42024608 ~ 42029506 (+) True tmem260
TU1862104 other downstream 179703 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 179735 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 179735 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 779299 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 1048339 44683362 ~ 44748925 (+) True G1628486

Expression Profile