RNA id: XR_002469747.2



Basic Information


Item Value
RNA id XR_002469747.2
length 925
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110497950
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44107330 ~ 44109395 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcgttcttcttgcaaagcatgtaaatgttttaatcaaactattatataaatctgactatccacaataatcacaTTATTGTCTGCATGTAACTGTACTCAATTATGAAACGCAGGTTGTTGTGATCTGTGCCTGTGTTTGAGTGAGTGCACATGTGGGGGAGGGGGACATTTTCAGAGAGCGAGGGAAAGTGAGTGGGAGATGAGTGGAGTAAAGTTTTGAGTTTCAACTTCATTCATtggagtttttttatttttatttttaaatcaaaCTTGGTTCGTGATTGGGCTACGAGATGTGGTCATGTCTAGATTGGATACATATTTTTTCAAACTTTCAACTTCCACTTTTGATTTCTGCGTTCACAAAACACAGGAGATTTTCTGTTTGCACATTCCACTTTTAGACTTTCATCTGAGTATGGCAGCCCAACTAAAATTGGCAAGGTGGCAGATAGTGAATGATTTGAATGAGCCTAATATCAAGGCTATATGTGACAATTTACTAcaaaaaaatgtgatcaataaATTTGAGAGGGACTCCATGACACATAGGATGCTAGACAGGGCAGATATGGCACGACAACTTGTGGACACTGTTATCAGCAAAGGTAACAACGCCTCCACATTAATGATAGAAGCACTGCAACAAGTTGACCAACACCTCTTCAAAGAGATCGAGAGAAACCTTGCGCTGGCCAATCACACTGTAGTCCAGGCTGGTGCTCAGGGTGCTCCGGATGCACCACCAAATTACAATGATTTGATGTGAGAATGACtgaagagaaagacaacagaagTCACAATTTTGTGCCTGGACTCCAGACAACCAGATGACAATGGTGTTGTTTCAGAAACTAACTGTATCTTGATAATGTGCTACCGTTGGtggtttacccaataaattactgggagcttATGTATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1862647 lncRNA downstream 12417 44094598 ~ 44094913 (-) True G1627807
TU1862643 lncRNA downstream 17724 44089372 ~ 44089606 (-) True G1627803
TU1862640 lncRNA downstream 20290 44086828 ~ 44087040 (-) True G1627800
TU1862555 lncRNA downstream 164448 43942646 ~ 43942882 (-) True G1627722
TU1862535 lncRNA downstream 244858 43862004 ~ 43862472 (-) True G1627709
TU1862741 lncRNA upstream 63415 44172810 ~ 44174312 (-) True G1627894
TU1862747 lncRNA upstream 70529 44179924 ~ 44180174 (-) True G1627900
TU1862782 lncRNA upstream 111336 44220731 ~ 44221039 (-) True G1627932
TU1862796 lncRNA upstream 117143 44226538 ~ 44226803 (-) True G1627945
TU1863004 lncRNA upstream 133719 44243114 ~ 44243359 (-) True G1628139
XM_021574436.2 mRNA downstream 90497 44007318 ~ 44016833 (-) True LOC110497949
XM_036954890.1 mRNA downstream 166010 43931473 ~ 43941320 (-) True LOC110497946
XM_036954892.1 mRNA downstream 166128 43931473 ~ 43941202 (-) False LOC110497946
XM_036954889.1 mRNA downstream 166129 43931473 ~ 43941201 (-) False LOC110497946
XM_036954891.1 mRNA downstream 166129 43931473 ~ 43941201 (-) False LOC110497946
XM_036954897.1 mRNA upstream 26376 44135771 ~ 44160047 (-) False LOC110497951
XM_036954895.1 mRNA upstream 26376 44135771 ~ 44160049 (-) False LOC110497951
XM_036954894.1 mRNA upstream 26376 44135771 ~ 44160210 (-) False LOC110497951
XM_036954893.1 mRNA upstream 26376 44135771 ~ 44160265 (-) False LOC110497951
XM_036954896.1 mRNA upstream 26376 44135771 ~ 44160265 (-) True LOC110497951
TU1861812 other downstream 698221 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 1268896 42759294 ~ 42838434 (-) True G1626324
TU1860906 other downstream 1466057 42640449 ~ 42641273 (-) True G1626232
TU1860882 other downstream 1636628 42465825 ~ 42470702 (-) False LOC110498355
TU1860762 other downstream 1851533 42255235 ~ 42255797 (-) True G1626105
TU1865759 other upstream 1894370 46003765 ~ 46005877 (-) False LOC110498001
TU1866141 other upstream 2509812 46619207 ~ 46629506 (-) False G1631005
TU1866265 other upstream 2720939 46830334 ~ 46830650 (-) True G1631120
TU1867475 other upstream 3806900 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 3859119 47968514 ~ 47970332 (-) True G1632228

Expression Profile