RNA id: XM_036954901.1


Basic Information

Item Value
RNA id XM_036954901.1
length 5267
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110497955
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44440142 ~ 44501752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGAAGCAGTAACCGGACACCTGTGCTGCCTGCTGCCACAGTTCCCTCCCAGTCAGGGCGGGGGGAGGCGGGGCCAGACCGGATAGACCAGTGTGCCGCATTCTTTTCCAACCTGGAGGCTTTTCTCAGGAACACAGAGATCTtctgtacacatatacacacaggaagagaggggaaagaaccATGCCAGGAGGGAAACTCGGACAGTAGCTCTGACTCAGGTCTCTGTATCTACACATATAGTAGGAGAGGAGTATTGGAACCTTCCGGGCCAAATTCAAATAACTTGTTCCGTTGTTTTCCTGAGAAAGTGAGAATTTGTTTCTCCTGGATTCCCAGGGAGATTATTCCGGGACATGCTTCCTGCCTCTGAACAGTTTGACTTGACTGGGCACGTCATTGGAATTCTGCTCTACAAAACTGGAAGTTCTGGAACTCTGGAAAATGTAGAGTAGAGGCTGTTTGTGATTGAAGAAAGTTGTCTATTCACAGCATAGCAAGGTTTTGTGTTGCCAAACGGGATTACAGGATAGCAGGGGTTATAGCTAGAGCCCTCCTGGAGAGGGTAAGAAGAGCTAGGGGATTTGTCCTCACAAAGGCCTTTTGTTCATTGGAACCAGTAGAAGCGGACACAGTTTGGCAGGTTAGACAGCTGGAGGTGTAGAGATGATCCTTTTGTGACACTGAATGGACAGACTGTACTGGGATAGCCTTTCTACCTGGCTGGCTgactacattttagtcatttagtagacactattatccagagcgatttacaggagaaattagggttaaATACCTTGCTCAAGGGGcaaatcaacagatttttcaccaagtCGGCTCAGGGAATCGaaccaaccttttggttactggcccaacactcttaacgctaggctacctgccgacccagAGTTCACTGCCCAAAGTACATGCTACAGTGCATTTAAGGGCTCTGTGAAAATGGACAGTGTAAGTAATAGCTCTGAGGTTCAGGGGAAGCAGCAATCCAATTTGTTCCGCAATAAGATCTCCACTATGTTTACACATGGGGACAAGACTGAGCCTCAGAGGCTGGCGGGGGAGACTGCGGTGCTGACGgctttcaggaccctgtctgaTGAAGAGAACGATCTCATAGGGGTCAGTGATCAAAGTACCCTGGATGTTATCAGTGATGTGAGGGGTATGAGTGTGGTACTTCATAAAAGAGAGGACAGGATTGAATCATGGGAGAATGAGTCCAGTAGCTTTGTGACCTCTCCTAACGCCGGCCAGGTGTCTGTTTCCACGGCCGACCCAGGTCTGGTCCAGGTTACAATGGTGGAGATCTGTAGCGACACAGAGATGGAAGATGAGGAGGGGATCAGCAGCCTCAGCCAATCGGACAAGCCTGACGCCCCTGGAATGTCCTTCCCACCTGACGTTGACCAGTGGACAGTGGCAGTGTTCGATGATAACAAGGGTCAGCTGCCACCCGTTGGCCCAGTGAGAGGTGCAATTGAGACAGACTTAAAGCTGCCTGTGTATAAGCCACATAGTCTTGTGGAGGGATCCCTCAAAGACACCTCTGTTCTGTACTCTGCAAGGTTTATGGGCAGATCTAACAGTGGGACAGACCTTGGactgctctcctctgtctccaaAACACAAGTGCCTGGAGACGGCTGCAGCACTGACCTCTACACTGATCCCAGGCCTGTGGAGGTGGGTGTGGATGCAGCAGCCATGGGTGCCAAGGGGTCCAGTTATCATCACCACAAAGTAGCCAAAGGCTTCAGCACCAGCCAGGAGGTATTGGGCCTTACTGACATGTGTGCTGGAGACAACTCTGCAGTGGCTTCACTTCTTAACTTGTCTCTCACCTCTGAACCCCAGACATCAGAGGAAGCAGCAGACGACACTGCCTTGCAGTCAGGACAGCCAGAGGGCCAAGATTCTGGACAGAGGAAGGAGATTTTTGGGGAAAACACTGGAACTGAGGAGCATAAAGATCATGTCCACTGCCTGGactccccctccaccctctctgagTCAAAGCCACCTGAAGCAGCAGAGACATCTTCTCCTAGCCTGGAGAAGCAGCCTGACACTGAAGTGAGAAAATGTATTTTAAGGACTGGTCTGGCCGTGTCGCGTGTTCCTGGAGAGTCCCCAACTGACAGCCAGCCAAGTGccactcctgtctctgtctcacccaGGGGCCAAGGCGACATGACTGTCAAAAGGAGGCCCGACACAGACTCACCCTCCGCCTCCCCCTCCAGTGGCACAGTCTCCTCCCATGCCCCCTCCTTCCAGCTGCCTGCCCTGTTCAGTGGACTGCGGGTTCTGAGGAAAGGGgctgtgggggaggagagggagacagtgtcTGAGATCAAACAGAGAGACGCTGACCTGGCCCTTCTGAGCCTGAAGAAGACTGTCAACAAAGCCAATAACTTCCCTGAGCAGATCACCTCCAGTAGCCGCACCCCCAAGAAACGTCCTGAGCCCAAACATGTGTCTGAGACCAAGAGTAATCTCCTGGGGCAGCTCAGCCAGCTGCTCAACCTTGACGGGACCAAGGCCGAGGACAACCCGGACCCACTgctagagctcagagacagggagcctgagaggggggaggagggggcgaCAGACCAGGGTCCAGAGCTGATCCCCACCACCCCACCAGCAGGCAACAGGAGAGCCTCAGACACAACATTAAACACTTTTAAGAGTCTCTTCAGCTCCAAACCTGCTAAAAGGGATACAGCGGATCCTGTGGATTTAGAGGCTgtcaagaaaaaaaataaaagtgaGAAGGACCTGCTGAAATCCATCTTTGAGAGAACCTCCAAGTCTCCCAGCAGTGAGCAAAAAGGTCCAGCGGAGTCTAAAtctgaggtcaccTCCCCTACAGACAGTGAGGACCGGACCCCCGGGCGGCTCCAGGCCATCTGGCCCCCGCCCAAGCCcaaggatgaggaggagaaggtgGGGCTCAGGTACACCGAGGCAGAGCACCAGGCTGCCCTCTTACAGCTGAAGAGAGAATgcaaagaggaggtggagaaagtACATGCAGACTTTGAGCTACAGATCTTCCAGGTGCGAGGGGAGCATGCTGTCGCCATGTCCCATCTGGAGGGAGTCATCTGCATGATGCAGACAGACCGTCAACAGGCCTTCAGCCTGGGCCACGAGAGGGGCGAGCTCCGTGAGGCCTGCGTGTCCACCGAGGACGACCTGCCTCCCAAAACTTTTCGGAATGTCTgcatccagacagacagggagacctTCCTCAGGACGCCCGAGGGTGAGGCCAGTCGGCCCAGTCTCGGCCCCAGTCAGAACGTGCCTAAGAAACTCAACCTGAGTCTGCATGGAGGAGCCTCAGGAATCCCCGGCCCACCTCCCCCgccccctcccccccttcctcccttccctggCCAATCAGGAccgcctccacctcctcctcctcctccacctcccccgtTACCTGGCAACATGGGGCCACcgcctccaccccccctcccaggTTTTggtcccccacctccccctccccctcctccggGGTTACCTGGAgctggtcctccccttcctccccctccacctgggtgtgccccaccccctcctcctggGGGTGGATTATTTGGGTTTGGGTTCGGCCAGGCAGCAGAGAAGGCCCCAAGGAAACCTGCGTTGGAACCTGCTACTCCCATGAAGCCTCTATACTGGACGAGGATACAGATCCAAGACAATAATAATAATACACTATGGGGTTCTCTGGAGGAGCCAGACATCGTAGACACCAAGGAGTTTGAGGACCTGTTCTCGAAGGCCACTCTGCAGCCAAAGAAGAAGCCCCTCTCAGACACCTTTGAGAAGAAGGCCAAGACTAAGAAGATTATCAAGCTGCTGGATGGGAAACGTTCCCAAGCAGTAGGCATCCTCATCTCAAGTCTTCACCTTGAAATGAAGGACATTCAGAAAGCTGTTTTGAGTGTAGATAACTCTGTGGTGGACTTGGAGACCATCGAGGCTTTATATGAAAATAGGGCCACGAATGACGAGCTGGAGAAGATAAAAACCCACTATGAGATGTCCAAGGAGGACGAGGTGAAGCTACTGGACAAGCCTGAACAGTTCTTGTATGAACTCTCCCAGATTCCAGACTTCTCTGGCCGGTCCCACTGCATCATATTCCAGTCTATCTTCCTTGACTGCATATCTTCCATCCACCGCAAAGTAGAAATAGTCTCCACCGTGAGCAAAaatCTGCTGGACTGTAGCAGTGTGAAGGATGTGATGGGGCTGGTCCTAGCCTTTGGGAACTACATGAACGGAGGCAACAGGACACGGGGTCAGGCTGATGGCTTTGGCCTGGAGATCCTGCCCAAACTGAAGGATGTCAAGAGCAGGGACAACTGTATCAGTCTGGTGGATTACGTAGTTGCATACTATCTGCGCAATTTTGACGAGCACGCAGGAACAGACAAGAGTATATTCCCACTGCCTGAGCCACAGGATTTCTTCTTGGCAGCTCAGGTCAAATTTGAAGACCTCACAAAGGACATGAGGAAGCTGGGGAGAGACCTGACTGGTGAGACACAGtgtgtgaAAAGGCTGTTCAGAAGGTGTGTGCTAGCTCCTCTGAGAAGGACCTCCAGCCCTTCAAGGAGAAAATGGAGGCCTTCGTCTCGACCGAGCGCCGGCCAGCCTGGTGCCACCTCCACACAGAACCATACCAGAGAGGACCCCAGGCGCCAGCTCGACCCCCCCGCTGTGACTAACGCCATTGGTCAtgactctcccccctcctcccccaccccagCCATGGCCACCCCTTCCTTTCATTAGGTTTATCTCAGACAATCAGCCtgctaatgtaaaaaaaaaaaaatggggtgGTAGCAGCTTAAGCTCACCCTCTCCCAAAAGACCCGCAAACCTGCCTTTGAACAATTTTTGGGAGACCTCCCCCTCTTAAATCTTCAAGTGGGAAAGGTCCCCCATCATTGTAAAAAGGATGAATCTGGAAAAATGCAATAAATCTGAGATCACAGGCACTCTCTGGCCCTAGATAAATTCTTGCACCTCGCCCTAGCCGGCCGCACACATCTGCCTTGCATTTAGACACTTTTACATGGCAGGAGTACACAGGAGCCTCCAGTTCCCGAGCCTCATACACTCACTCCTCAGCCCAGCTCTGTGCTGCCTGTGCCCCTGCTccgcgtatatatatatatactgtacagtatcagTTAAAAgtctggacacctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862880 lncRNA upstream 86247 44353393 ~ 44353895 (+) True G1628028
TU1862808 lncRNA upstream 198431 44241383 ~ 44241711 (+) True G1627956
TU1862807 lncRNA upstream 198824 44240988 ~ 44241318 (+) True G1627955
TU1862697 lncRNA upstream 259741 44179780 ~ 44180401 (+) True G1627852
TU1862680 lncRNA upstream 270010 44168074 ~ 44170132 (+) True G1627837
TU1862987 lncRNA downstream 23473 44515446 ~ 44515964 (+) True G1628126
TU1862990 lncRNA downstream 32787 44524760 ~ 44525164 (+) True G1628129
TU1863186 lncRNA downstream 38563 44530536 ~ 44586188 (+) True G1628316
TU1863300 lncRNA downstream 118021 44609994 ~ 44610230 (+) True G1628425
TU1863306 lncRNA downstream 122560 44614533 ~ 44614833 (+) True G1628431
XM_036954902.1 mRNA upstream 9897 44410249 ~ 44430245 (+) True LOC118941479
XM_021574439.2 mRNA upstream 272738 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA upstream 272738 44164075 ~ 44167404 (+) True zgc:194887
XR_002469746.2 mRNA upstream 493468 43944625 ~ 43946674 (+) True LOC110497948
XM_021574434.2 mRNA upstream 508770 43927072 ~ 43931372 (+) False LOC110497947
XM_036954904.1 mRNA downstream 45533 44537506 ~ 44559873 (+) True LOC110497958
NM_001185031.1 mRNA downstream 494699 44986672 ~ 44988391 (+) True cyp1c1
NM_001185032.1 mRNA downstream 499495 44991468 ~ 44993957 (+) True cyp1c2
XM_021574454.2 mRNA downstream 559187 45051160 ~ 45053552 (+) False LOC110497964
XM_021574452.2 mRNA downstream 572264 45064237 ~ 45068205 (+) False LOC110497963
TU1862108 other upstream 623641 43814758 ~ 43816501 (+) True G1627319
TU1862104 other upstream 623841 43814726 ~ 43816301 (+) False G1627319
TU1862103 other upstream 623841 43814758 ~ 43816301 (+) False G1627319
TU1861490 other upstream 1033015 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 2188571 42250731 ~ 42251571 (+) True G1625710
TU1863373 other downstream 191389 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 196409 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 337949 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 394898 44886871 ~ 44887173 (+) True G1628689
TU1863660 other downstream 559226 45051199 ~ 45053551 (+) True LOC110497964

Expression Profile