RNA id: NM_001185032.1


Basic Information

Item Value
RNA id NM_001185032.1
length 2490
RNA type mRNA
GC content 0.43
exon number 1
gene id cyp1c2
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44991468 ~ 44993957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCCTACATTTTCAGATCATAATGTAGGACAGACCATACTTTAAAAAAGACtacttatttttgtatttttgggGGAATTGAGGTGAGAGGAGGATCCATTTGAATTATACGGTTACCAGGAATAACGTTCAACAAAGAAAAAGTGTAATCTCTCAAAATTTGAAGAATTGAACAACAGAAATAGAATATCTTAGAACCATGGCACTGCTGGAAACAGACTTTGAGGTGAAAGGCAGCAGCATCATCAGGGAGTGGAGTGGACAGGTCCAGCCAGCGCTGGTCGCCTCCTTGGTTTTCCTCTTCTGTCTGGAAGCCTGTCTGTGGGTCAGGAATCTCAGACTCAAGAGAAGGCTACCAGGACCTTTTGCCTGGCCGGTGGTGGGCAATGCCATGCAGCTGGGGCAGATGCCTCATATCACCTTCTCCAAGCTGGCAAAGAAGTACGGCAACGTGTATCAGATAAGACTGGGCTGCAACAACATAGTGGTGCTTAATGGAGATGCATCAATACGAGAAGCATTGGTTCAACACAGCACAGAGTTTGCAGGCAGACCCAACTTTGTGTCTtttcagtcagtgtctggtggtaACAGCATGACATTCACTAACTACAGCAAACAGTGGAGGACGCACCGGAAGATCGCTCAGACCACCATTAGAGCTTTCTCCTCTGCCAACAGCCAGACCAAAAAAGCATTTGAACAGCACGTTGTGGCAGAGGCCACTGAGCTCATTGAAGCTTTCCTCAAACTCAATGCTGAGGGACAGTTTTTCAACCCTGCTCATGAACTGACAGTAGCTGCTGCCAATGTAATCTGTGCCCTGTGCTTTGGAAAACGTTATGGACATGATGACATTGAGTTTAGAACCCTTCTGGGCAGCGTGGACAAGTTTGGAGAGACGGTGGGGGCTGGCAGCTTGGTGGATGTCATGCCCTGGCTTCAGTATTTCCCAAATCCTGTCCGCAGGGTCTACCAGAGCTTCAAAGACCTCAATAAAGAGTTTTTCACCTTTGTGAGAGACAAGGTTGTGGAGCACAGGGAGACATTTGACCCTGAAGTGACCCGGGACATGAGTGATGCCATTATTGGGGTCATTGACAAGGCGGACAGTGATACCGGGTTGACGGAGGCCCACACAGAAGGGACAGTGTCTGATCTGATTGGTGCAGGACTGGATACTGTGTCCACTTGCCTTCATTGGATGCTCCTTTTATTGGTGAAATACCCCAACATCCAAACCAGACTGCAGGAGCAGATTGACAAAGTGGTAGGCCGTGACAGGCTGCCCTGTATTGAGGACAAAGCCAACCTGGCTTACCTAGATGCCGTTATCTATGAGACCATGCGCTACACCAGCTTTGTACCCCTCACCATCCCACACTCCACCACCTCAGATGTTACCATCGAAGGCTTCCACATCCCCAAAGACACAGTGGTCTTCATCAACCAGTGGTCTGTCAACCACGACCCTTTACAGTGGAAGGACCCACATCTCTTTGACCCTTCACGGTTTCTAGATGAAAATGGTGCCCTTGACAAGGATCTGACCAGcagtgtgatgatattctcagcAGGAAAGAGGCGATGTATCGGTGACCAGATAGCCAAAGTGGAGGTCTTTTTATTTTCTGCTATTTTGATTCACCAGTGCACATTTGAAAATAATCCAAGTCAGGACCTCTCCTTAGACTGCTCCTATGGGTTAACATTGAAGCCCCTGAACTACAAGATCTCTGCCAAGCTCAGAGGAGAATTACTTACTGGGGCATAAAATCTTGTTCTTTGTGTTTTCAAACAGAGCACCCATTAATGGAGTGCAGTAATCCAATGTAATATAAAAGGCATGTACACAACAGTGAATGTTTATGCTTTAATACTGTAGGTACCAACCATAAGATTTATATTCAtattttactattattattatcattagctAATCTGATTGTTGATTGTATAAATCACTTTTTGTGACAGATAACTGAatcatgttttgtatttctataatTTTATTGAAATTCCTGACATTTGGAATCAAAATATGTTATCCCTCCAAATTTAGGAAAATAGATGTTGTAGCAATTCATGTTACAAAACATACCTTCTAAATTCTCGTAAAAATTGGAAACACATGATATTTGAGTTTTATGAACAATTTCACTCCATCAAAGTATTATGTCAAAGTAGAATTTAATCTACAAGATAAATTAATACAAAAATAACTTAGATGTGTGCAGATTGCTACACAAGTGATATGTAAGAATTTAAATTACTATGATGTGGCAGCCCAAAGTCACAGTTTGTAATACATCTTAAGTATCTTTTGTTATATATGAGGGTATTTAGTTTGGCCACCCCAAATTGGCATATAAACTGGTGGTCATGAATGGATTTTACTGCAAGTGCTTGGTTGTTGCAGTGATGTGGAGAAATCATGTGTTGTGTTGCCCATGTTGAGATATCTGAAGAATGATACATCCTCTGACCC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07410 CYP1B1; cytochrome P450 family 1 subfamily B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863679 lncRNA upstream 20164 44971092 ~ 44971304 (+) True G1628781
TU1863634 lncRNA upstream 69139 44922098 ~ 44922329 (+) True G1628737
TU1863614 lncRNA upstream 82961 44908267 ~ 44908507 (+) True G1628717
TU1863605 lncRNA upstream 90236 44901026 ~ 44901232 (+) True G1628708
TU1863436 lncRNA upstream 165130 44826022 ~ 44826338 (+) True G1628546
TU1863752 lncRNA downstream 92925 45086882 ~ 45094330 (+) True G1628840
TU1863773 lncRNA downstream 124495 45118452 ~ 45118655 (+) True G1628861
TU1863780 lncRNA downstream 201955 45195912 ~ 45198309 (+) True LOC110497969
TU1863961 lncRNA downstream 217936 45211893 ~ 45212120 (+) True G1629028
TU1863967 lncRNA downstream 223139 45217096 ~ 45220307 (+) True LOC110497971
NM_001185031.1 mRNA upstream 3077 44986672 ~ 44988391 (+) True cyp1c1
XM_036954904.1 mRNA upstream 431595 44537506 ~ 44559873 (+) True LOC110497958
XR_005037748.1 mRNA upstream 489716 44440155 ~ 44501752 (+) False LOC110497955
XM_036954900.1 mRNA upstream 489716 44440166 ~ 44501752 (+) True LOC110497955
XM_036954901.1 mRNA upstream 499495 44440142 ~ 44491973 (+) False LOC110497955
XM_021574454.2 mRNA downstream 57203 45051160 ~ 45053552 (+) False LOC110497964
XM_021574452.2 mRNA downstream 70280 45064237 ~ 45068205 (+) False LOC110497963
XM_021574453.2 mRNA downstream 70280 45064237 ~ 45068205 (+) True LOC110497963
XM_021574456.2 mRNA downstream 135058 45129015 ~ 45147200 (+) True LOC110497966
XM_036954910.1 mRNA downstream 157569 45151526 ~ 45157970 (+) True LOC110497965
TU1863586 other upstream 104295 44886871 ~ 44887173 (+) True G1628689
TU1863440 other upstream 105234 44829922 ~ 44886234 (+) True G1628550
TU1863373 other upstream 242543 44683362 ~ 44748925 (+) True G1628486
TU1863375 other upstream 244022 44688382 ~ 44747446 (+) True G1628488
TU1862932 other upstream 542796 44414322 ~ 44448672 (+) True G1628073
TU1863660 other downstream 57242 45051199 ~ 45053551 (+) True LOC110497964
TU1863779 other downstream 193005 45186962 ~ 45194241 (+) True G1628865
TU1863990 other downstream 304542 45298499 ~ 45301327 (+) False LOC110497977
TU1863991 other downstream 304542 45298499 ~ 45301327 (+) True LOC110497977
TU1864078 other downstream 402874 45396831 ~ 45399822 (+) True G1629134

Expression Profile