RNA id: XM_021574468.2


Basic Information

Item Value
RNA id XM_021574468.2
length 2048
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110497973
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45291705 ~ 45296375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATATAAGCCTAATATTGTAGCACTCAACAGAATCATCACAAGTACCTTTATTTATACTGTATATCCTGATCTCTCAAAAAAGGGAAATGAAAGAAAAAACAGGAACCGTGTATTTTCCGGTGGACAGTAGATGTCATACCTAGTTTCATATCAATTTCTGAGGACATAGAGGAAGGCTATTGTAACGACAAATCACTTGCAGAAGACGAGCCGCTTTACTCTGTTTCCTACATCAGGAACATCCATGCCAGAGATGTCCTCTCCTTACAATACTTTACATGATAGCGATGTTCCCAACGTAAGGGGATCCAAACGGCTTGTTTCAATTGCTGTGGCAGTGGGATGTTTGACTGCATTCGGGGCACTGCTCTCCTTTTCTATGTATGAGAAGAGCACAGAAGAGCATTTCCAAAACTACAAGATCTTCCAAAAAACAAACACTGATCAAAATAACATTTCTGAAGAGCAAAGCCGTATAATCCTCGTAGAGAGCATTCCCCTGTATATGAAATATGACGACAATGCAACCTTTGGGACCCCAGTGGACAAAGCCTGGAGAGATCTCCTGTCCATGGCAACCTACCAAGTCGATGTGGCTTCCTTCTACTGGACTCTTACCGGTGATGACATCAATATCAACTCTTCCACTGACTTGCCTGGAAAGAACATACTGGAGCAGTTTGGAGCTTTACCTTCCAGAAATGTGTCAGTGAGAGTTGTGACAAGTATTCCCTCTGTGCTGACAAACTCCACAGATCTTCATTTTCTGAGACAGAAAGGAGTCCAAGTAAGAAAAGTTCCCTTTGGGCGTTTGACTGGGGGTGTACTCCACAGCAAGTTCTGGATTGTTGATAGGAAACACATTTTCCTGGGAAGTGCCAACATGGATTGGAGGTCTCTTACACAGGTAAAGGAACTGGGAGTGGTGATCTATAACTGCTCCAGTCTGGCTGAGGACCTCCATAAGATCTTTGAGTCATACTGGGTGATGGGTCATCGCAACAGCACCATCCCAAACCCTTGGCCCTCCAAGTATGACACTGCCATCAACAAAGAGCACCCCATGCTGCTGAAGACTGATAATGTTTCAAGCAAAATCTACATCACAGCCTCTCCTCCCACTTTCTGCCCCACCTCTCGGACGCAGGACCTTGATTCTATCCTCTCAGTGATCTCAGGGGCACAGCACTACATTGATGTAGCAGTCATGGAGTATTTCCCCACCACACGCTTCATACACCCTCAAAGGTACTGGCCAGCCATTGATGATGCATTAAAGAGGGCTGCTTTTGAGCGGAATGTTAAGGTCCGTCTGCTGGTGAGCTGTGGGCGGGATTCTGATCCAGCCATGCTTCCTTTTCTTCAGTCTCTAGCCTCCCTGAATTACCCTGCCCAGCGTATCAGCATTCAAGTGAAACTGTCCATTGTGCCAGTGGGGAACCAGTCAGAGATACCCCACTCTAGAGTAAACCATAATAAATACATGGTGACTGATAAAATGGCATATATTGGGACATCTAACTGGTCAGCTGACTACTTCAACACCACAGCTGGAGTGGGGCTGGTGGTTTCCCAGCACGCACCACACTGGGCCTGGAGGACCCAGGCTCTGCAGGGGCAGCTCAGGGCAGTATTTGACAGGGACTGGCAGTCTCAGTTTACTGTATGTCTCGCTGACTTGGGTCATCACCCTGACTGTGCCCTCTCAAAAGGATAGGCGCTCTACTTACCATCCGTACACTCAGTTATAACAATGTTTACTTTATAAAAGTCCCCAAAGCATTCAGTTATGGCAGTTATGGCTTAGGGAGATAACAGTAAGCCTGTTGGactgcttttttgttgttgtctttggTTGTTTCTATGAGGAACGTTGCAACTGAACACACATAATTTGCTTCATTATTTGTTTGTATTAGTTACCTTTTTTCCAGAGTGAAAATGTCATGTTGAATGTTTAATATTTCACTGTCTATTAGGGTACGTTGGGGGAAATCGTACCTTAATACCTTTTGCAAGCAAATAAATACTATTTCATGATATATA

Function

GO: NA

KEGG:

id description
K16860 PLD3_4; phospholipase D3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863983 lncRNA upstream 34591 45256900 ~ 45257116 (+) True G1629047
TU1863967 lncRNA upstream 71400 45217096 ~ 45220307 (+) True LOC110497971
TU1863961 lncRNA upstream 79587 45211893 ~ 45212120 (+) True G1629028
TU1863780 lncRNA upstream 93398 45195912 ~ 45198309 (+) True LOC110497969
TU1863773 lncRNA upstream 173052 45118452 ~ 45118655 (+) True G1628861
TU1864007 lncRNA downstream 14501 45310876 ~ 45377620 (+) True G1629069
TU1864056 lncRNA downstream 82668 45379043 ~ 45379377 (+) True G1629113
TU1864058 lncRNA downstream 83986 45380361 ~ 45380579 (+) True G1629115
TU1864060 lncRNA downstream 84935 45381310 ~ 45381540 (+) True G1629117
TU1864063 lncRNA downstream 87149 45383524 ~ 45383819 (+) True G1629120
XM_036954915.1 mRNA upstream 49 45266098 ~ 45291658 (+) False LOC110497972
XM_021574475.2 mRNA downstream 2071 45298446 ~ 45301424 (+) False LOC110497977
XM_021574478.2 mRNA downstream 108261 45404636 ~ 45421914 (+) True zgc:162989
XM_021574480.2 mRNA downstream 130700 45427075 ~ 45430207 (+) True bub1bb
XM_021574481.2 mRNA downstream 148451 45444826 ~ 45470840 (+) False LOC110497981
XM_021574486.1 mRNA downstream 337259 45633634 ~ 45635163 (+) False si:dkey-248g15.3
TU1863779 other upstream 97466 45186962 ~ 45194241 (+) True G1628865
TU1863660 other upstream 238156 45051199 ~ 45053551 (+) True LOC110497964
TU1863586 other upstream 404534 44886871 ~ 44887173 (+) True G1628689
TU1863440 other upstream 405473 44829922 ~ 44886234 (+) True G1628550
TU1863375 other upstream 544261 44688382 ~ 44747446 (+) True G1628488
TU1863990 other downstream 2124 45298499 ~ 45301327 (+) False LOC110497977
TU1863991 other downstream 2124 45298499 ~ 45301327 (+) True LOC110497977
TU1864078 other downstream 100456 45396831 ~ 45399822 (+) True G1629134
TU1864149 other downstream 205419 45501794 ~ 45502263 (+) True G1629200
TU1864159 other downstream 219799 45516174 ~ 45516648 (+) True G1629210

Expression Profile