RNA id: XM_021574489.2


Basic Information

Item Value
RNA id XM_021574489.2
length 2623
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110497986
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45663142 ~ 45672367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGTCATGAAAAGCAAAAATGTCTCAGACAGCAGGTGGCAGCATTGAATTGCTGAAAGAAAGAGATGAAGGGCGTAAACCAACCACTGTTTATAGGCGTGTTCACGCGAAGCAATGGGCGTAACTTTGCTCTGGATATTTTGAAGCTTGCTGAGTGCCAAGCTTTCTCGAGGGTTACATAGAAGGATTTCTGGCTGTTGGCCTGAATTAAGACATGAAGAAATACAGAGAACGATGGAGAGCAAATTCTGCATTTTGACCGAAACAGAAGACCTCAAAACCCTGATTTCGAGCACCGAAGAGAGTCTGCAAATTGAAAGGACCAAGACATTGTTTGAGGAGATCCGTGCATCCATCAACAACAATGATGAAGAGGACCGTTCCTTTTGGAGGCCTGTGCTCCCATGGGGGGGCGTTTACACCATCAGGGCAGGGAGGAAGGCCATCTCATGCACCCCTCTGTATGTTAAGATAAGCCTAAAGAACACCTGCACCATCGATGGGTTCCTCATGATTCTTTATGTAATTTTGAGAGACAACCAGAGCTTTCCCCGGGAGGTGGGCATATTCCTGGGCAGGCAGTTTGTGGAGCATTTCCTCTACCTGATGGACTCGTATGACTACACCACCGTTAAGATGCTGTGGATCTGGGACAGGATGTCCAAGAGGCAGTACCGCTCAGTGATCCACCATGCAGCGTTGGAGATCGACCTGTTTGGTAATGAACATGAGAACTTCACCAAGAACTTGGAGACAATGATGTCTACCATGCAGGAGAGTCTGTGCACCAACTGGAGCTGTCCTGCTCGTTTCCAGGAGTTCATACAGAAAACCATCAACATCAATCCTCCTCACGAGCTGCCCCCTAGAGATCCCATTCAGTCAGCTGTGGATGAGTTCTTCTGTCCCAAGATCATTCTCTGCAAAGAACTGGGGTGTAATGGGTTGAGGGAGTTCTCTCAGAGGGTCTTCTGCCATGGACCACCTCCTTTTGTCATTCTCAACATGCAGCTTTGGAAGTCTGAGGAGCTGTCCTATGTTCCCTACCATCTAGCCCTATCCCAACACAGGTACTCACTGGAGGGCGCCACACTCTTCAACAAGGAGGAGCATCACTACTCTGCAGCCTTCCAGATAGACGGCTACTGGATGCACTATGACGGGCTGAGGAGCGACAACCTGATTCTGTTAAACAAGCCCCCTgaactcctccttctctcttcccttgtCTACATCCGCGCCTCAGACAAATGAGATGCACTAATGTAACCAAGCAGGGATGGGGTCGGTTCCATTTTTCATTCCATCATTTCAGGATGAAAATAAATTCTCCTGAATTTACTTGAATTGAAAAGGAATTGACCCCAATTGTGTCACCATGGTCCAGAAGGAAGGAGGTAGATACTAGACAACACTGATAGGGAAGCATCTTTTGAAAAATGCACACTAACATCTTCCTGTTTATTGCCCTTCGTTCACAGAAATAGTATCCAAGTTACTTTACATTTGGCTCATGATGGGTTTTGTCTTCCATTCCTCAGTGAGCTCTTACCAGATACTTTTATCACCTAATCATATTTATTGAAATTTTTATCTAGTTTGAAAAGGCTTATACCACATTTCCAAACTTTTTAGGAGATCATGTCAACAACTTCCTTGTTTTTATACTTTGAGATTACTTTTTGGAATTATGTGCTCCATTTTGCCTGACTGTTGCCTCAAACACTCACTGTGCAAAATGATAAGTTCATCTTCTCTTTGGGCATGCTTGGAATCCAAGAATATATGCATGGACTATAATAGTTCTGGGGAGGTATGCATATTAAAGAATCAACTCAACCTTAAATAGCTCCACTGCAACAAAAACAAAGGTTTGCAGCGTGTTTAGTTGTCTTGGGTGAAATGGTTGCACTTTCCGAGAAGCAAATTCAGCTAATCAAACTTTGATGTAGAATTGtcaacagggtgtgtgtgtgtatatataggctAGACTAGTGAAGCATCTGAGATTGTACAGGACTCATCTACTACAATCCTTTTGTGCATACTAGCCCTGACCTCAGATCAAACTGGTGCTTTTTTTGTACTATTTCCCCTGTTTAAAAACATTTGAAACAGTATTTGCATTTTGTGGAAATTCAATCATTATCCTTAATTTACTTGCTTGTTTTAAGCTGTCCATTGGGCTTCAACTTGGAAGTGAGTCACACAGCGTTAACTTGTATTAAAATGAATACCTGCTCAAATATTTGTATATTGTGTGAATGTATCATTGGATAAAATTTCAGTTCTGTCTTAAATGTAAGTAATTACTTGTACTTACAAGTACCCCAGCATAGTGATGTTACATAAGTGCTTCTTGAGTGCTTACCTTTCACAGTAGCATATAATACCCTGAATTCAAATTATTCTGCACAATTCAATATGGTACATTGTTACATCCCAATCTAAACAAGATGTCAAAGCATTagtaaataaatgtgattttgtAATGCATTTGATCATTTGGAAATAACACTACTGCTCATCACAGGCTTCATATGCACATATGTACTGTTAAGCATTGACCTCTGCCAGTTTCATCTTTGTCAGAACTAAATAATGAAACTCTTTGAGCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864278 lncRNA upstream 12723 45643017 ~ 45650419 (+) True G1629320
TU1864277 lncRNA upstream 18010 45643017 ~ 45645132 (+) False G1629320
TU1864165 lncRNA upstream 93027 45524037 ~ 45570115 (+) True G1629213
TU1864160 lncRNA upstream 143508 45518766 ~ 45519634 (+) True G1629211
TU1864153 lncRNA upstream 156559 45506181 ~ 45506583 (+) True G1629204
TU1864295 lncRNA downstream 8633 45681000 ~ 45681254 (+) True G1629336
TU1864262 lncRNA downstream 48734 45721101 ~ 45722154 (+) True G1629306
TU1864261 lncRNA downstream 50109 45722476 ~ 45722759 (+) True G1629305
TU1864259 lncRNA downstream 99022 45771389 ~ 45773995 (+) True G1629303
TU1864335 lncRNA downstream 101710 45774077 ~ 45774279 (+) True G1629373
XM_021574486.1 mRNA upstream 27979 45633634 ~ 45635163 (+) False si:dkey-248g15.3
XM_021574485.2 mRNA upstream 27979 45634122 ~ 45635163 (+) True si:dkey-248g15.3
XM_021574481.2 mRNA upstream 192302 45444826 ~ 45470840 (+) False LOC110497981
XM_021574480.2 mRNA upstream 232935 45427075 ~ 45430207 (+) True bub1bb
XM_021574478.2 mRNA upstream 241228 45404636 ~ 45421914 (+) True zgc:162989
XM_021574493.2 mRNA downstream 12491 45684858 ~ 45720183 (+) False LOC110497988
XM_021574497.2 mRNA downstream 12494 45684861 ~ 45720183 (+) False LOC110497988
XM_036954925.1 mRNA downstream 12502 45684869 ~ 45720183 (+) False LOC110497988
XM_021574498.2 mRNA downstream 12506 45684873 ~ 45720183 (+) True LOC110497988
XM_021574512.2 mRNA downstream 121523 45793890 ~ 45798812 (+) False LOC110497992
TU1864159 other upstream 146494 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 160879 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 263320 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 361815 45298499 ~ 45301327 (+) False LOC110497977
TU1864795 other downstream 341357 46013724 ~ 46016639 (+) True G1629779
TU1864938 other downstream 553015 46225382 ~ 46225820 (+) True G1629912
TU1864963 other downstream 585552 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1987759 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 2075330 47747697 ~ 47749082 (+) True G1631844

Expression Profile