RNA id: TCONS_00005969


Basic Information

Item Value
RNA id TCONS_00005969
length 810
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id XLOC_002499
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1423241 ~ 1433140 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttaatgtgtgtgtttttgtgtcatgGGTATGACAGAGATATTACTGGAGAAGGTGACTTATGAGGACATTACTGATATCACCATTTTCCAAAAGACTTAAGACAAAATTAGGACACAGCCGAAGCCGCTGTTCGccgaggaagaggaggaagaagaggatgACAAAGACGAGCCAGAATGGAAGAAGCGCAAGATCTGAGGAGATATTCTGTTCCCGCTTTACTCTGAGTGTGAGTTGTGAAGTAAAACCGATGGAGTCACGTCCGTCTGGATTCTCTCAAACTTTCCCAACCTTTATTTGGACTGAGTGCGGTGGAGGACATCTTTACGTCTCTATAAAAGTCTGTCAGTCTATATTGAAGCGGAAGAAATAGAAAATAATGCAGTCATTTTGCTGATAGTGGTTTTTAATTGATTGAGTCGTGCTCGTACTGACAgctcattgttattattttgactAGTATTTCATTATGTTCTTCGGTAGTGTTTGTCTCTTTTTACATACAAGTGAAACACCATAGTGGAGTGTGTTTCTCGCTTCAGCTAACACACTGTTGTATTTGGTATTACGGGTTGTAAagcaaaaatgtgtgtgttttacgTTCACTCAACCTTTAATAAATACTGTTggatatttgttatttttgtggAAGCTGTGCGAGTGGCGCGTCGAGGCGCGCTTTGTGTTGCTGTACGTATCGCTGTGTGCGATCACATGTTTGCGTGACGGTTTGTCGTGTAAACATTGGAGACGTCACGCTAGCACAACACATTCCTTTCCATTgagtcttgtgtgtgtgttggtcttt

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0007049 cell cycle biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031105 septin complex cellular_component
GO:0005940 septin ring cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005968 lncRNA downstream 767322 657051 ~ 657406 (-) True XLOC_002495
TCONS_00005967 lncRNA downstream 876527 546336 ~ 548201 (-) True XLOC_002492
TCONS_00005741 lncRNA downstream 876528 546202 ~ 548200 (-) False XLOC_002492
TCONS_00005966 lncRNA downstream 1003075 415997 ~ 421653 (-) True XLOC_002491
TCONS_00005964 lncRNA downstream 1003077 415997 ~ 421651 (-) False XLOC_002491
TCONS_00005743 lncRNA upstream 62891 1496031 ~ 1519871 (-) True XLOC_002500
TCONS_00004673 lncRNA upstream 108123 1541263 ~ 1544095 (-) True XLOC_002501
TCONS_00004674 lncRNA upstream 111023 1544163 ~ 1552789 (-) True XLOC_002502
TCONS_00005970 lncRNA upstream 233202 1666342 ~ 1667630 (-) True XLOC_002504
TCONS_00005971 lncRNA upstream 236004 1669144 ~ 1718419 (-) False XLOC_002505
TCONS_00004668 mRNA downstream 104614 1294463 ~ 1320114 (-) True XLOC_002498
TCONS_00004666 mRNA downstream 148682 1187653 ~ 1276046 (-) False XLOC_002497
TCONS_00004665 mRNA downstream 166323 1187653 ~ 1258405 (-) False XLOC_002497
TCONS_00004667 mRNA downstream 166338 1204745 ~ 1258390 (-) True XLOC_002497
TCONS_00004664 mRNA downstream 244414 1109803 ~ 1180314 (-) True XLOC_002496
TCONS_00004670 mRNA upstream 1816 1434956 ~ 1523253 (-) False XLOC_002500
TCONS_00004669 mRNA upstream 1816 1434956 ~ 1523253 (-) False XLOC_002500
TCONS_00004671 mRNA upstream 17044 1450184 ~ 1523289 (-) False XLOC_002500
TCONS_00004672 mRNA upstream 42866 1476006 ~ 1523268 (-) False XLOC_002500
TCONS_00004675 mRNA upstream 164130 1597270 ~ 1625080 (-) False XLOC_002503
TCONS_00004658 other downstream 1084701 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 1348537 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 1350338 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004703 other upstream 1433580 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 1435338 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 2073400 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 2335511 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 3585418 5018558 ~ 5020500 (-) False XLOC_002543

Expression Profile

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