RNA id: XM_021574492.2


Basic Information

Item Value
RNA id XM_021574492.2
length 5622
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110497987
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45672506 ~ 45682662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTCCTGACAGACGCTGGGGTTCCTGCCGCTATTGCGATAAAAACAGCTATTGTCGGGACATCTGACGCTCAACACAGGTTTCTCTCCGTTGCATATTCCTaTGGACCAGCAGGCCCAGTCCTACATGCTTGCCAGTCTGACGCGGCCCCACTCTGAGCAGCTGCTGCAAGGCCTACAGCTGTTGCGGCAGGACCATGAACTGTGCGACATTGTGCTGCGAGTTGGGGATGCTAAGATCCATGCTCACAAAGTGGTGCTGGCGAGCATCAGCCCTTACTTCAAGGCCATGTTCACGGGAAATCTGTCAGAGAAGGAGACCTCTGAGGTGGAGTTCCAGTGTGTTGATGAGGCTGCGCTACAAGCCATCGTTGAGTATGCCTACACTGGCACAGTATTCATCTCACAGGAAACGGTGGAGTCCCTACTGCCAGCTGCTAACCTACTCCAGGTCAAGCTGGTGCTGAAGGAGTGTTGCTCTTTCCTAGAGAGCCAGCTAGATGCTGGAAATTGTATAGGCATCTCTCGCTTCGCTGAGACCTATGGATGCCATGATCTCTGCCTGGCTGCCACTAAATTCATCTGCCAGAATTTTGAAGAGGTGTGCCAGACAGAGGAGTTTTTTGAGCTGACACGGGCAGAGCTGGATGAAATAGTGTCAAATGATTGTCTGAAGGTGGTAACAGAAGAGACTGTGTTCTATGCCCTGGAGTCGTGGATCAAATATGATGTCACTGAGCGGCAGCAGCACCTGGCTCAGCTACTGCACTGCATCCGCCTGCCTCTCCTCAGTGTTAAGTTCCTTACCCGCCTCTACGAGGCAAACCACCTTATCCGGGATGACCACGCCTGCAAGCACCTGCTCAACGAAGCTCTCAAATACCATTTCATGCCTGAGCACCGGCTCTCCTACCAGACGGTGTTGTCTACACGGCCACGCTGTGCTCCCAAGGTGCTCCTTGCTGTTGGAGGCAAGGCTGGACTCTTCGCCACCCTCGAGAGCATGGAGATGTATTTCCCTCAGACGGACTCATGGATTGGGCTTGCCCCTCTCAGTGTGCCCCGCTATGAGTTTGGAGTGGCATTGTTGGACCAGAAGGTGTATGTGGTGGGTGGCATTGCCACACACATGCGACAGGGCATTAGCTACCGGAGACATGAGAGTACAGTGGAGAGATGGGACCCTGACAGCAACACCTGGTCCACAGTGGAGCGCATGGCAGAGTGTCGCAGCACCCTGGGGGTAGTGGTCTTGGCTGGGGAGCTCTATGCCCTGGGGGGCTACGACGGCCAGTACTATCTACAGTCTGTGGAAAAATATGTCCCCAAGGTGAAGGAGTGGCAGCCTGTGGCACCCATGACCAAGTCACGCAGCTGTTTTGCCACCGCTGTGCTGGATGGCATGGTCTATGCCATCGGAGGCTATGGCCCAGCCCACATGAACAGTGTGGAGCGGTATGACCCCAGCAAGGATGCCTGGGAAATGGTAGCCCCCATGGCAGACAAACGGATCAACTTTGGTGTTGGGGTCATGCTAGGGTTTATATTTGTGGTTGGGGGACACAACGGGGTATCACACCTGTCCAGCATTGAGAGGTATGACCCACACCAGAACCAGTGGACAGCCTGTCGGCCCATGAATGAGCCACGTACAGGGGTTGGCTCAGCGATCGTGGACAACTACCTCTATGTGGTGGGGGGTCACTCGGGGTCATCCTACCTGAACACTGTCCAGCGGTACAACCCCATCACAGACAGCTGGCTGGACTCTAGTGGCATGATGTACTGCCGCTGTAACTTTGGGCTGACTGCTCTTTGACCCATGATACCCCTGGGTAGGACTCCTTAAGAGAAGAGTTGGACGAAaggcttttcttttctttttttccccccgTTCATCACCAGCAGGCTGAGGGCGGTGCCACACTGCCGTGAATCCCGGCGAGCAAGCTTGCTGCTGGATGAATGTGCCCAGCTGGCGACAGGGGACCACCGAGATGGCCAGAGTGAGAAGGGTCTGGTTTGGGTGGAGGAAGGCGCGGGGCAGATCACCATGGATCTTGTCACAGAGATGACCACTACTGCTGCTGGACCACAACGAGGACTCTGCCATTTTACAGAGGACTGTGGGAGAAAACTAAGTggaggggggagaaaaaaaaagagaaaataaaaagTGTAGACTTACGTTTATGCCATTATTTCTGTTAAACACTCcagacttttttttcttcttcctgcTATGAGCAGAACAtgtgttccaattttctggatcCTTaaagtttgtgtgtgcgtgtggcgcAGAATGTCTGTATGCTTGTGAGTAGATGCATGTCAGATTAAATGATTATTTTGTTTCTGTGTGCTGGACTAAAGCTCAGGCAAGGTGATTGGCTCACACACTGAGTTTGAAATGTCTGCATCTAAATCAGTGCTTCACAAAGAGAAATTGGAATCTTTATATATTCACTTACAAGGGCTGCCTTTTTTCTCTGTAAAtgaaaagaaatatatatatgaatatatcctCTAGTGCATTGCCTGTAAATGTTTTTTGCACTGGTTACTAGTGTGTATTTGAATCAAGGGTTAAAGGAGAGGTTAGGAAGGATAAGCAAACCCCAATGAATTCTCCTGAGAGTACTTGCCACCTGTCTGTTTCCTCCTTGGAGAAATTCtgagattcccccccccccccccccccccccatgttacTGCTTCTATTACATCATCCTGTGGTAGGGTCACACTTCATCCCTCTTCAtaagcattcaaaagtgaccctGTCCCTCTTCACTGTTGGGTTTGTATGCTGCTAACTGGTGCTATATTCAGGATTctcttatttttattattttatttgttccTCTGTTACTGTTGTAGATGTATATGCCCCAACTTGACAAGCTCCCATGCAATAAAGCAGTGTCTTTGCTTTGAGCCCCATGTTAAATTAAACTCTTGAGGCAGTTTATCAATACATTACTAATCTGATGATTTCATTCTTTAGCCCCAGGGATGCCATCTGTTAAGCTATGGTTTGCCTGAAACATTGTCCCTGCAATTAAATAGTAGTGCATCTGGTTGCCCACTATCACTGCCAGTTTCCTTACAAAGAAAGTCTGAGATTGTGCTCTAATGGGTTAGGAACGAGCCTCTTGTTTAGCATGTGAATGATCCCTACACCCTTCTGCTTGCTTGCCACCTCTCTGCTGAAGCATGTGTGAGGAGCTGCATGTGGCCAAGGGCTTCCTGACGAGCTCAGGGAAGAGTGCATATACAAAGCCTCATGAGACATGCCAAAATATGCGTTCACAAGTCTGGTGTAACTTTCCCACCTACAGACAGAGCTACAAATAGCTTTCCTCTGTGTGCCAGAATCAAAGGGTAATTTTCACTGCTAATGTATGGTACGTGTGACATACTGCCCTGCTGTCAGGGGTGGATGTGGTGTCTCTGTCAAGGGAAATTGTCACTGTCACAAAGTCTTTGACAGACCGACAAGGGCATGGGGACAGAGCTCaaagtacaccccccccccccccccccccccagaaggcTGCAGGCTGAGTCTGGGTGTTGTAGCTTTGGGTCACTCTAAAGGACAGGTAACATGAGGCAATAGAGAGAACTAATGTGATGTGTAAACCTCAAGAGTCCCTGTTGTTGGTCCAGaatgaaatagtttttttccttGTATTGTACATTATAGATGTTTGCACATGTGGAAAACTTAAATGGAGCTCTGCATTGCACTTACCAAACTATTTGATATGAAGTGTTATTTCAATTTGTACATAGGTCTCGATTTAGGTTTATGGCATTTAAACAATGCAATATTGTTTTCAGTGGATACAATTTTTGCTTTGAATTTGACTTCCTCAAAGTCAGGGTGTCTCATATTGCTGTGATGTTATCACACGTGGCATGTCTGTCTGTTCACATGTTTATATTGTCTGATGAAAGACCACTGTTATTCAAACCTCTGTTTTCCTCATCCCACTGCATTGCATGCTCTTGTCTTTGGGAACATTTCCAATGTTGTGCCTGTCAGTTCACATGTACTAGGAAAAGTTTGCAGACAGATGCATTGTGTACTCCAGTAAAAATACCAGTTATTGTTTTGCATTTTTCACAAGTAATGTAAGATTGGCACAAGACTTTGACTGTGTATGGGTCTTGCTCTAAGCCATCTTATCGGTCTCACCAGAGAGCAGCCTTGCAGTTACAGTACTGCAGTTTTGTGTGTTCTTCCATTTAACACACTTGTCAGTTGTGGTTACAAATGACAGTACACTTTAGCTCTTACCCTCTAACTTTACCTTGGACTATTTAGTCTTGCTCTAGCAATAAGAGGCCGAGTACGAGCTTGTCCAAACAAGTATGTGAGTTCTTCACTTGATGAGGACTCTCTTTCAAAATACTTCATTTATTTTTGGTTTAGTCTTAGGGGTAATTCAATTGGATTTCAAGGTGTCAGGGTTAGAtggctgctgctgtgtgttttTTTCTCATCCTGGAATAGTGGGCTTTATTATTTCACACTAAACATCTCCAGCAATCCTGTCATTTTCTTCATGTTTTCTTTTTAAAGACGCCATTGTTAAGTTGTCACGGGATGCAAGTAAATGGTGAGCCATTTTAACCTGCATGACTGTACAGCTCCTCTTCTAAATGCATACTATTTATCTGCATAACTATGAAATGATTCTGTCATTTCTTTGGATTTTACTCATTTGGAATAATGTTAATGCAAATCTAACATTGCAAACAACTAATTGGGGAAACTTTACATTCTTGGGAGATCCTAAGATAGACAAACAGTGcatttttggggggtgaataAACGGCCATCTCATATAGTTCAAAAGGATCTAATACTTTCTTTTAAACATTTgccatttattgaatatttcttCCATTTAGATTGTGTGTACTTTTTAACACTTGATGTTAGGTAAATGAGGCATTTGTCTATCCACAACAGGCTGGTAGGATGAGCCTGAACATCAGAACAGTGAAAATCATGCAGGCGTGATTGTCTGCAGCTACCATCTATTGTCAAGCATTTGTTTCACTAGCATGTAGGTTATCCTTGTGGGGATATTGAAAACCACAATGTTAGGGATGTATTTATACTGACTTATTCACTGCGTTGGCTCTTGGTCATAACTCTTGGTCATACGTGGAATCTGAAAACATCAAACTGCAAAATGAAGGGATGTATAGATGTGTGTGAAGTTAATTTACTTATTTATCATGGCCtaaccatgtcttgttttgacaaCTCACCAAAGTGCTTGTTTTAAAGAATGCAGAGGGAGTACTAATATCAAGTCTGGAAAAGACTCACTGCTGTCTTgtctaaaaaaataaaagaattgAAACCGATGTCAATGTTAGCCAAATGAACACTGCTTCATTTCCATTTCCCATGAGTGTGTCTGAAGGGGATATTTTTGAATTGTATATCCTGTGGATTATTACTGGAACTACAAGAACCTTGCTGTAGAAGCTGCATTTCCCCCACATGTTATCATGCTTTGAACATCCATTTTAGCCAGTTTATTTATTTGGTGCAGTTGTACCCTGTTAAAATGAATAAATGCCTGCCTTAAAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864460 lncRNA downstream 187158 45484946 ~ 45485348 (-) True G1629489
TU1864459 lncRNA downstream 187767 45484495 ~ 45484739 (-) True G1629488
TU1864454 lncRNA downstream 192645 45479616 ~ 45479861 (-) True G1629483
TU1864451 lncRNA downstream 196638 45475554 ~ 45475868 (-) True G1629480
TU1864445 lncRNA downstream 203743 45468512 ~ 45468763 (-) True G1629477
TU1864609 lncRNA upstream 39859 45722478 ~ 45722775 (-) True G1629617
TU1864635 lncRNA upstream 46134 45728753 ~ 45729051 (-) True G1629643
TU1864669 lncRNA upstream 108671 45791290 ~ 45792023 (-) True G1629670
TU1865650 lncRNA upstream 123759 45806378 ~ 45806579 (-) True G1630558
TU1865689 lncRNA upstream 177785 45860404 ~ 45861600 (-) True G1630596
XR_005037753.1 mRNA downstream 3826 45667054 ~ 45668680 (-) True LOC118941483
XM_021574488.2 mRNA downstream 9529 45643017 ~ 45662977 (-) True mthfd1b
XM_021574482.2 mRNA downstream 58960 45561747 ~ 45613546 (-) False LOC110497982
XM_021574484.2 mRNA downstream 58960 45561747 ~ 45613546 (-) True LOC110497982
XM_021574483.2 mRNA downstream 59640 45561747 ~ 45612866 (-) False LOC110497982
XM_021574500.2 mRNA upstream 60441 45743060 ~ 45747891 (-) False LOC110497989
XM_021574499.2 mRNA upstream 60441 45743060 ~ 45748073 (-) True LOC110497989
XR_005037754.1 mRNA upstream 81238 45763857 ~ 45774045 (-) False LOC110497990
XR_005037755.1 mRNA upstream 81238 45763857 ~ 45774045 (-) False LOC110497990
XM_021574505.2 mRNA upstream 83122 45765741 ~ 45774045 (-) False LOC110497990
TU1861812 other downstream 2263397 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 2834072 42759294 ~ 42838434 (-) True G1626324
TU1860906 other downstream 3031233 42640449 ~ 42641273 (-) True G1626232
TU1860882 other downstream 3201804 42465825 ~ 42470702 (-) False LOC110498355
TU1860762 other downstream 3416709 42255235 ~ 42255797 (-) True G1626105
TU1865759 other upstream 321146 46003765 ~ 46005877 (-) False LOC110498001
TU1866141 other upstream 936588 46619207 ~ 46629506 (-) False G1631005
TU1866265 other upstream 1147715 46830334 ~ 46830650 (-) True G1631120
TU1867475 other upstream 2233676 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 2285895 47968514 ~ 47970332 (-) True G1632228

Expression Profile