RNA id: XM_021574493.2


Basic Information

Item Value
RNA id XM_021574493.2
length 5711
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC110497988
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45684858 ~ 45720183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttGGAATGGTATACATCAAATTCCATCCGATACTCAACCTACCGCTCGCGTCACCATGGAAGCGGTCCGTTTGTGTCATGTTGAATTCGCCATTTTGATGCTTCTTGGCGTGGGCTACGGCGACGAACGTCTCTACTTCAGCGCAGCTAGCTAGATTAGCTACAAACATTCAACATAGAATCTCATACAGTTACAAGGGGATTTTAATTCGTATTATTAGTCGGACATTTAACCGAGGAGGTCATGAAGATTTGGAAAACGTTTTCGTACCCCGGACGTCAAATTTGAACGACTAATCGGAATGCGAAGTCCGAATTTGTCTGTTTTCTAACTTTGCCAGTTAACGTTAAGTAGTTAGCCAAGATAGCCACCACCAGGTTGCTACTCAGCCGCAAGCCTTGAAGACGTagctaaaagctatctatgataTTGAATTATATGGAAAACATCAATCAGAAGAGGTACTGGCAGCGACGTCGCCCTGACACTCCATTTCTGAACAATGAATGATGTTAGAAGCAATGGAAACATTTTGTGGGCTACCTAGTTACCAATACAGTTAGCTGAAATACAACAGGGGCTTTCAAATATAACATTCCACTCTGCTTTTTCCCCCCGTCGTGGCTATGTAGGGAAAGCACAGCAACCTTACAAGTGGTTTTATTTTTCACTCAACGTTGCTTTCACTGTTCACGTTCCAGTTGTCTCGTAGAACAAAACAAATAACATTTATTCATAAGAAGCTGCAAATATGAAGTATTTTAATGTCATGCATTGATTATGCTTGGACATGTTCAAATGTCTTTCCCAATACCAGCTGCCTACAGGTCTAAAACTTATTGTTGAACTGACTATTACCATATAAAGACATATCTGAGTGCAATTGTACTGGACGGCAACCACAGTATTGCCACTGTGAAATACAGCACCGAAGAGGCTAAATCTACCCACCAAGATGACGATTCAAAGTAAAGGACAATATTGCTGTCCTCACAGAAATGTGAATGCTTCATTAGATTTCCCCATTTGACCACATCCAAAGGACCATCCATTATGATTTTTGGATTGATATCCCAAGAGTTACACGAAAAGCTCCTAGACCTCAAAAACTACCAAAATCGAACAAATGGTGTGGAACAGCTGAAAAATATCCTCTTTGGATTGGACTTGAAGCCAGTCCCCTCAGACAGTATTGTGGAGTTTATCAATTTTCTCCGCAGACTTCTAGATGACAGCAACTTCAAAGTTTTGTACGGCACTTTACAGGTGATAAACCTACTCATTCAGAAATTGGATTACAATGTAGACACATATTTCAAACAGTTAGCGTGTGTGGCTCTGAAAACCCTTGGGGACACCCGCGCTGTCACCAGGAATGAGTATATGAATGTGTTCAGGCAGTTGACTAGAATTGTAGGGCCACAGAAAGTGTTGGACCTTGTTATTGGACACCTGAGACACAAGAACTCCCGGGTCAGAGAGGATGTCATCAACATCATCACAGCAGCTATGCTCACCCACCCCAGGAAGGACTTCAACATCCCCAGCCTCTGCTTTGAAGTTGCACCATACCTGGCAGACAGCAAGAAGAAGGTCCGCCATGCAGCCCTAGAACTATTTGCCGTTTTTGACCATTGCCTTGACACAGGGAAAAAACAGCCCCTAATGAAGGCTGTAAACAGAGTTGAGCTCAATGGGGATGTGGAGGGTCTTATGGCAGCTGTGCAAGCAAGAAGAGCCAGGCACATACTTCCCAGACTGTCCTCGGATGGAATGGTGGAGTATGCCCTTGTAATCCCTAAACCAGGACAACGATGCTCACCTCAGTTTGGGTCGGGAGCTGACCTGGAGTGGGTGCTCAATGGTGGGCGGATCAGCAGCGCCAGGAGCATCAGGACAGAACCAGACTCTGACAGGCTGTATCATGGTTATGGAAGCTTGGGCTCCCTTGTTGATGACCTTCCACTGCAGAGGAGAATTGTCAGTGCAGGCAAAGGGAAGAACAAGCTGCCCTGGGAGAGGTCAAGCCTCCCTTCCACAGTGAACACCCAGCCATGCAGTGCCCCTAAGGGGAAATCCTCTGATCAGATGATCTCCTTCCCTTGGAGCAGTTTGCCACCAaaatgtctggaatacactgtgCAACAAGTTTCAGTGAGCATTCAGGTCATCAGTGAAGACTGCCTGTCCCATACCCGGAAGCTGAGTCCGGAGACATATGTCCCCAGTTTCGGTTCTGCAGAGCCCCATAAAACCCTGTCCTCTAGGAGGGAATCCCCTGGACGCTTGAGAAGGAGTGGGAGCCTTGACTTAGACCCTGACATCTTTAAATCTACCAACTTCTCTGACACAGAGGGAGTGGTACACAAGGCCCGTCTCCTCTCTGGGACCTCCGGCTTTGAGCACACCTTATCCAACCCCTCGGCCCAGGGCACCTTCCTACTGCCCTCCTACCCTCTGGCTACACTCCCCGGGGGCCTGCTGACCCCAACACTGTCCCACCGCCGCGCTGACTCCTCACTGTCAATGTCCAACACTTGGCCCAACAAGAGAGAGAGCAGCCCTCAAAGACGAGACCCCAGCCCCTGGAAAGACATATCAAGTGACTTCTCATCCAGCAGGTGTTCTCCACGGCCTCACCGTGCTTCTCTGGTGAGCTCCTCATCTGCCTCGTCTTTCCGACAGGCTCTGAGCAGGACGCGGACCGGGCTGCCTATCTCCCCATCCCCAGGCCTTCTCCTGCCAGAGCGGGGCTTGTCTCAGAATGGCCAGTGGTCTAGTCCTCTAGCTCCGTCTCCATCCAGCCTGCAGGACCACCTGTCTGAGAGGGACCTTCACCTAGACCTGGATCACCTCAGCCTGCAGGACCAAGACCAGGAAGAGGACCCCTTGGACCGGCAGGAGATGTTGAACTCCCTGCGCTCTCTGCGCTGCAGCGCAGCTAAGAAGAAGGCCAAGGTGAGTCTGAGTGGCTCAGACCCTGACCCAGATAGCCCAGACTCGGCCATGAAACTGGAGCTGGCTCTGGACTCCCCCTCTCACAACTCCCCCACCGTCACCAGTCCAGCTAGCGAGAGCGGCCTCTCCAGCCTCTACTCACCCCCAAACACCACCCTCAATGGCACCAAAACCAGCCCTGGGAATTCTGCCTCCTCTTCAACAAAGCCTCACATTGCTAGAGTGCCTTCTGCTAAGCTGAGATCTTCTgtctccatggacttcagtgcTCTTCAAGGCTTTCCACTCAGAGATAAAATCATACCTGAAGTGAGTGTGGTTGGTCAAAGAGTCACCTACTCGAACGGACCAATGGAACCTGAGGAAGAGGACAGGACTACAGAATACTCTCCACCCCCAAGTAGACTAGCCTGCCGTGAGCCAATCAGAGCCCTGAGGCCTGCCAAAGGTTCCCAGAGCTACAGCAACAGGAACTCACCAGCCACTGACATGCCTGAAGGTGTGGTTGGCAGAGGAGTGTTTGGCTCGGTGGTTCTGTCCAGCCGTCCAGGGGTTGCCATGTCGATGGAGCAGGGTGACTGTATGACCAGGCTGCCCAGTGACCCCCCAACTGGCATCTATGGCCATGCAGTCCCCGGCAACCATCTGGACCCCGACGACATCCCAGCCTCAGAGGTGGCCAGGgaTAAGGAGAAGGTGAGAATGACAAGGTTTGCTCGGGACAAGATGCGGCAGCACCGATTGGAGCAGCAGGAGGGCCAGGTTGCCCTGGGGGATCGCCAGAGAGCTGATAGGATGCGTCTGCGCCTCAGACAGGTGCAAAATGACGTGGCTACAGAGGATACAGCAGCCATTTCCAACGACTTTCATTTGAATGGTAGCATGGTGACGTCCACCAAGGCTGACTCTCTCCAAGACGAGTCACCCACCAGCCCCCAGGGATCCCAGAGCCCTATTAAATGTTTCAGTCCCCCCCACCAGCCCAGCCCCCCCACGGTCCCTGCCAACCCCGGGAGCACCCTGCCCCGCCTGAGGAGGGCTCCCAGTCTCAGCAGGACACggctgtctctctcacacagctcAGATGAGATGTCCCCAGGCATTCCCAGCCAGAAGAGAGACCTGACAGAGCAGCCTGAACTACGGCCCTTCTCCAAACCTGAGCTAGCACTGACACAGAGCTTCAAACTCCTCAACTCAGACGACTGGGAGAAGAAGATTGAGGGCCTGACCTTTCTCCGTGGTCTGACGCAGTACCATTCAGACATACTGCTTAACAGGCTGCATGACGTCTGTCTCGCACTCATCCAAGAGGTGAGGAACCTTCGTTCGGGTGTGTCCCGTGTTGCGGTTGGGGTAATGGGTGAGCTGTACACTGCTCTGCAGAAGGGCATGGACCAGGAGCTGGAGGGCACAGCCAAGGCTCTGCTGCAGAAAGCTGGGGAGTCCAACGCCTTCATCAGACAGGATGTGGATGCAGCGTTGGACAGCATGGTGCAACACTGCACCCCGACACGCAGCCTGAATGCTCTGCTCACCAGCGGCCTCAGTCACCTGAACTCTGTGGTGAGGAAGTGCGCGGGTCATCACATGGCCAACCTGATGGAGAACATTGGTGCTGCCCGCCTGCTGTCTGGAGGGAAAGACCTCACCGACCGAATACTACCTGCCGTCACCAAGCTGGCACAAGACTCCTCCCAGGAAGCTAGGTACCAGGGGCGCCGGATGCTGTTATTTCTGTCACTGCACAGTGATTTCGATAAGATGTTGGAGAAATATATCCCTGCCAAAGACCTGGCTCCCATCAGAGACACTGTCTTCACACTGAAGACTAAGGGCCTGGGAGAGATGCCCCAGGAcaccccgtcagccaggggccggcGTTCCCACCCTGGCAGTGGGACAGTGAGGGCCTCATCTCTCAACAGGGAACCACTCAAAGTGATCAACAGGCAGTCTGGGCAGTACAACGGAAGACCTCAAGCTCACAGCATTGCAGACAAGATCGAGTACATCAAGCAGCTCACAGCCCTGCTGGGTTCAAAGGACTTTAGAGAGCGCATCAAGGGCATCGACCAGCTAATGGTGGACTGCGAGCACAACCCCAACATGGTCATCAGCAGTATCTTTCCGGTGTTTGATGCCTTTAAGGCCAGACTGCAGGAGTCCAACAGTAAGGTCAACCTGTACGCTCTAGAGTCTCTGCAGAAGATTGTCACTCTGATGAAGGATAACCTTGCCCAGGTAATCTACATCCTGGTCCCAGCCATCGTGGACAATCACCTCAACTCCAAGAACAACGCTATCTACACTGCTGCTATTGGAGCCATCCACACACTCATCCAAAACCTGGATAACGCTCTCCTCCTCCAGCCCTTCTGCACCAAGGCCCAGTTCCTGAGTGGTAAGGCTAAGGTGGATCTCATAGAGAAGGTTGCAGATCTGGTGATAGAATTATATCCACGTAAACCCCAGGTGGTGGAACAGAAGGCGTTACCCCTGCTGTGGCACCTCCTGGGCACATCCAGCCACAGTGGCACTGTCCACGGCCGGGGTGGCAGCGTGCGAGGAGCCACCTCCAACCTGTGCCAAGCCCTCTACACCCACATGGGGCCTGGGCTGGCAGAGTTCGCCGCTTCCCAGTCTGCCAACGTCCACAAGAGCCTCAACGAGCTCATGAGGACCCTCTCCTACCCCTGAGGGCCCCTCAGAAAACACAACCTTCAAAAcacaatcaccccccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864295 lncRNA upstream 3604 45681000 ~ 45681254 (+) True G1629336
TU1864274 lncRNA upstream 6114 45641170 ~ 45678744 (+) True G1629317
TU1864278 lncRNA upstream 34439 45643017 ~ 45650419 (+) True G1629320
TU1864277 lncRNA upstream 39726 45643017 ~ 45645132 (+) False G1629320
TU1864165 lncRNA upstream 114743 45524037 ~ 45570115 (+) True G1629213
TU1864262 lncRNA downstream 918 45721101 ~ 45722154 (+) True G1629306
TU1864261 lncRNA downstream 2293 45722476 ~ 45722759 (+) True G1629305
TU1864259 lncRNA downstream 51206 45771389 ~ 45773995 (+) True G1629303
TU1864335 lncRNA downstream 53894 45774077 ~ 45774279 (+) True G1629373
TU1864653 lncRNA downstream 61332 45781515 ~ 45781926 (+) True G1629659
XM_021574489.2 mRNA upstream 12491 45663142 ~ 45672367 (+) True LOC110497986
XM_021574486.1 mRNA upstream 49695 45633634 ~ 45635163 (+) False si:dkey-248g15.3
XM_021574485.2 mRNA upstream 49695 45634122 ~ 45635163 (+) True si:dkey-248g15.3
XM_021574481.2 mRNA upstream 214018 45444826 ~ 45470840 (+) False LOC110497981
XM_021574480.2 mRNA upstream 254651 45427075 ~ 45430207 (+) True bub1bb
XM_021574512.2 mRNA downstream 73707 45793890 ~ 45798812 (+) False LOC110497992
XM_036954928.1 mRNA downstream 73707 45793890 ~ 45798812 (+) False LOC110497992
XM_021574513.2 mRNA downstream 73899 45794082 ~ 45798812 (+) True LOC110497992
XM_021574507.2 mRNA downstream 95790 45815973 ~ 45862580 (+) False LOC110497991
XM_021574509.2 mRNA downstream 95808 45815991 ~ 45862580 (+) False LOC110497991
TU1864159 other upstream 168210 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 182595 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 285036 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 383531 45298499 ~ 45301327 (+) False LOC110497977
TU1864795 other downstream 293541 46013724 ~ 46016639 (+) True G1629779
TU1864938 other downstream 505199 46225382 ~ 46225820 (+) True G1629912
TU1864963 other downstream 537736 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1939943 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 2027514 47747697 ~ 47749082 (+) True G1631844

Expression Profile