RNA id: XM_021574509.2


Basic Information

Item Value
RNA id XM_021574509.2
length 6566
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110497991
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45815973 ~ 45862580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGATAGGACAGCACAATACCGATAGGACAGTATTGTGTAATTTGGGGGAAACCATTGGAGCGTTCGTGCGAAAAACCGATTGAGCCAGTTTGTGGAAAACAATTCTTGGAGTGTTTCGGTCAGCAGAAAATACCACTGTAGTCTCCTCATGTGGCACATTTAGCGGAAATGCTTTACCTGGTGTTTCAGTTCGGACTGTGAACCACTTTGGAGAGGAACGCAGTGGAAGCGCTTCAAATGGAAAGCAGATGAGGCAGAATTTGAACTATCAAATCGGGATTTAAAAGTATTTAATCCAAAGGTGCAGTGTGAGGTGGGATGTCTGGCCGTGAGTCTGTGGGAGACTTGATCCCCCAGGACGTTGCGGAGGTGTTTGCCCATGAGAGGCAAACCAAAGGGGGCCGTAGGAAGAAGCGTGGGGGCTCCCTGGGTCGGGCCTTCAGCTGGTTCAAGGGAAAGAAAAAGAAGGAGGTCAAAGCTAACGGACAGATCCAGGACTTTCATTCAGTTGGTCCAAAGACTGTCAAGATCTCCCCACAGGGCCACAGCCATGCAGTCCCAAAGCAGGAGGATGAGGGTACTCACGTCCCTTCACACGTCCAGGAGAATGTGTTCATCGAGGGCAGCCGGCCCAAGTACCTGGAGGACCTGCACACTGAGGCCCGGGAGGGACTCAAACTTCAGCAGCAAGAAGAAACAAATAATGGGGTAGATTACCAGGATGACCAAAGCATCGCTTCAACAGTGACCCGGCAGCCTGACGAGACTGAGAGTGACagttacagagagaggagaggctctTTGTCAGACAGCACTATACTAGACACCATGTCCCAGGTCTCAACGCGCTCCGCTGTCTCCACACGGTCCTCACGGTCAGGACTGACCCGCCAAGCTTCAACCTTCAGGCCCCTGAAGTCAGAGAAGAAGCCAGAGAAGACCAAGGCCAGGAGGAGACACAGGAGAACCACAGTTATGGGGATACCACAACACATCCAGAGGGAACTGGGGCTGGATAGAGCATCATGGGCAGCTCGTCGGGTTATAGACGAGGATGGGCTCCATAACGGTGAGAGCCTGGACATCCACACCATTGATGGGCCTCACCTAGCTGATTCccaggagggtgtgaggatatatCTCCAGTCTGTAGAAGGCTTGCAGCCCGTTAGTGAGGACCAGGTCCAGAAGTTCCCCTCCCGGGCCGGTCACACAGATGACCTGGCTCTCCTCCAGCGCATGGGCCCCCAGCTGTGCGGCCTGAAGAGGCCCAATTCCCTGGCCGTCCCCTGGATGACCACGGTGTCCGGCCTGCCGCACCATCCCCCCAGCCCCGTCATGTCCATGTCCCCCCAGGCCACCTACATGTCTAAGATCATCCCCAATGCCGTGCTGCCACCCTCCATCGACGTGGTGGAGATTAGCCATAACCGCAGCCGGAGCAGTGTCCGTACCGTCAGTAAGAGCAGACTGCTGCTGGCCAGCCCTGCCTCCTCCAGAGCCTCCTCCCACGCCTCCGCCATGTCCTCTGCCTCCCGATACAACCCACCACACTTCTCTGACAGCTCTGGATGGAGCCACTCTGAGTCCTCTGAGACCCTGGTGTCTGACTCCTCCACTGTCTCCTCCAACAGCACCACCAGACAGGGGGGGGATGGGGAGGGCTCATCCAGGGAGATGGCCCTGGACAGAGAGAGTATCCACTCCTCTGTCAGTAAGGCCTCCAGGACCTCAACCATCAAAGGCAAGGGGAAAGCCAGAGGGGATGATGGCAAACAGGAGGGGCCCTTCATCCGAAGCCTATCTGTGATGAAGTCCAAGAGGGCACCGGCCCCACCCAGCCGCTCCTACTCCTTACACATGGACAAGATGAAGCGGCGCTCACGAGACCTGACTGACATCAGGGTGGCTGCCCCTGCCCAAAGCAGCCCAGTCCGTAGTGGGGAGGCTAAGGCTGTCAGTGCTGGGGAGACCGGCTCTTCTCCCAAGCCCTCCAGCAACAAAAGTAGCCCTGGATACACAGCAGACACCAGCTCTCTGGATGAGTCCTCGGGCTCTGTGACCACCAACTCCTTTCACACCCGACAGCAAGCAgccagggaagaggagaggaatgagcAGCCAGGCTCCACAGGCTTCTCTCCCCAGAAACAGACCCCCCAGGAAAACATCCTGAAGAAGACTGTTTCCCCCTCCAGCTGCTATCCCAGCCCGGGTAGCATGCCCACCCTCCCCTCCAAACAGACCCATAACTCATCCCCAGGAAACAAGAGGGGCATCCTGGCTAAACTAGCAAGCATTTTCCCCAAGGCACCATCCCCATCACCTGTTATTCAGCCACAGGCCTCTGACAGCAGCAAGACTGTCAGTCCATCCCCTCCAGTCGACACTGTAACTTCCTCACCTTCAGTCATGGCACTCAGAGAGCTGTTCAATATCCCTCCCCCACCCAAAGTGTgtgccccctctcctcctcccccggAGGTATGGGCACACAACAAGCGCACTTTTGAACTGCTGCTAGGTCCCCCGGCCCCCAACAACACGGATACGCTGGTGCGAAAGAACCCAAAGGATCGACGACAGCAGAGGCAGTCTCCTTCCACATCAAGAGAGGATTCTGAATCTGCACCAGAGCAGGAGGCAGGAGGTGTGCTAGATAGGGTCACTGAGTCTCTGTCTAAAGAGCAGACCAGTAATCCAGCAGCGCTAACATCTGTGTCAGGAAACGGTCAGGAGAGTCCAAAGGTCCAGGAAAAAGATGGGTTGAGTCCAGTGGTTATAGAAGTGGGAGATAAAGGACCGACTCAAATAGAGCCTTCTGAAGGTTTGAAAAGGAATAGTGAAGTGGCACAGAAAGTTGAACAAGAGAGGGTACAAGGAAGTCAGTTGGTGGTTGAACCAGAGAAGGTCAAGGTAAGTCAGATGATAGGTAAACTAGAGACGGTCCAGGCAAGTCGGTTGGTAAATGAAAAGTCAGTGAACGCCTCAGTAGCTCCAGGAAGGGGCCTAGGAAAagtaaatacagaaatacagactcCTGCTACAGAGAAAAGGACTGAATCTCAACTTAAAATGGACACGTTGTCTATGCTTAGCCCTGCTCTAGCACGCGTCTTgccatctccttctcctcccccagcACACTAtcctccccttcccccttccaAACAGACCCCGCCAGTGACCATACTTGGGGTCCCCTCAGATTCTTCACCCGCTCCAGAGCTCCCACTAGTCTACCCCACTGGGGAATCCTTCTggcctcctcccccacctcccatGGACTTGGCCAcccttggtgatgagcttgaccTCCCCCTTCCCCCACCACCCAGTGGTTGTGAGGAGGGGGTTATTATGACAGAACCTGTGCCCCCTGTTTCAGAGGGGACAGTGGGTGCTCCAAACCCTGCCCGACCTGCACCACAGGAAGTTTCATCTGCACCCCAGGGAATACCGCAGCCCAGTCCAGGGATCACAGAGTGCCAGAACCAAGAGAAGATGTCCCTCAGCAAGAGCTCTCCCACTCCCCCAGAGAAGGCCCCCACTCCTGTGGTCACCCCCTCCCTTCTGCAGATGGTCAAGCTGAGGTCTGTCAATAATGGTGACCAGGGTCTGAAAAGGGACCAGAGTCAGGGACAGAACCATACAGAGGTCACTTTGAGGGCCAAACAACCCAGTAACGGGGAGGCTCCACAGAAGCCTATTCGAAGGTCTCTGATCATGACAGCTCCCCCTCCCACTGTCACATCCCCACCTACTACTGTTGTCTCACAACTTCCCACAGCCACTGTCCCAGAGGCAGCCCTAACCTCAGCCACTGTCCCGGAGGCAGCCCTAACCTCAGCCACTGTCCCAGAGGCAGCCCTAACCTCAGCCCCAACCACAACCACAGCCAAGTTCCAGCCCAGCATAGTTAATTTACCCTCAAAGTCCTCTACTGTCAACTCTCCTACAAGTAAGTCTCCTTCTGCCTCAGCCACCATGAGAATGCAGGAGGCCATTCGCTTGAGGACAGAGGCCAGAAGTAAAGAGGGGCCTCCCTCTCATCTCAGCCTGCACTCCCCAACTTCCCCAACAGGTCTCAAGTTCCCCTCATCTACCGCCAGTTTCATCTTCGCCAAGAGCACAAAGAAGGTTGTCATAGAAACCCTCTCAACCCCTGAGGCCCAGGCCAATCTCACAAAGAAGCTGGTGGCAGAGCTTTCATCTATGTCCAATCCATCCAAGTCCATAGAAACACAGAAGGAGGTGGCAGTCAAGGTTCCACCACCTGTGGCAAGGAAACCCAGGCTTAAGGTCACAGATGCAGAGCCCAGTGTGGAGACTGAGCATGTGCAAACTGCGGGACAGGAAGCACAGCCAGCAGACAACACTGAGGGTGCTCCAGAGGCTCCAAACGGGACAGCAGTTAGTGTTGAAgtgtcaccatcatcatcatccacaTGAGCAACACTGCCACTTGGCAAGGACTAATCATTCACAAAGACAGACTGACTTTTACCTGTAAATTGAGAAGACCCAATGTGTCAAACACCATATGTCAAtcacaagagggagagagatggatcaaGGGGTGAGTGGATGAGAACTACAGAGCCTTCTGAAGGCAAGGCAACAGGACATAGCTAAATGTtgccctgtcaacaacaacaaaaacaatccTTTGAGTTTATATGAAAATGGTGTTGGTCTTTAATTTCTCTAATACTATTTTTTCTATTTTAGAGTATTTTTCTTTGCCAGAAGGACTTCTTACTGGTCTGATTAACAATAGACAGCCATGGACAGCATTCTGGTCTAGGTACAAGGCTAGGTTGCCCTCTAGTGTCAACTATGGAATGTTACAGCTACTGCCGTTTGGTACACAAAACAATGAAAAGTTTTATAATCCACTTGTCTGGATTATATACCAGAATGTTGTATTTTTATATATTCATATCATTATAAGATCATGCACTATTAAATTGTGTTAAGTTCCCATTTCATCCTTCATGTTTTTGCAATAAACATTATTTACCTAATATCATTTCCTGTAAACATCTTCCATTGCAttttgggagaaaaaaaataaatgttttttttcttttgttctacgTTTCAATAATGTCAATATTTTATGAAGTCATCTGATGTCATCATATTTTCTTATCTCCCTAGCAACTAAAATGATGTCATCAGAACTGGATGATGTCATTTGTTCTGAGGATGAGAATCATATTCATGCTGAGAATCCCAATTTACATGTTCATATTTTGTTTCTCTGTTGTTGATATGAATGTTCATAGATTTGTACTGGAAGCTCATCCTTTGTATAAATCAAATCTCAGTCTTTCACTAGGAGTATTTGAACAAATAGGTATTTGTCTTGTTTTTAATTACTTGTCCCTCAGATTTAGATACACTTCCTTTCAACCAGATAGGAGCTATATTATACATTGCATTTATGTTGCTAAATTGTCCAGAAATTGGGATATTCCTCAACTGAATGAAATCTGCTTTGGAAGTACTAAATATTATTCAAAGTGATTTCAATGATAAAAGATTATGAAAAATGATTAAGTATAGTTTCACTTATTTCAATATAACCGAATAAATTGATTTATTCACAATGAATGAATTCAGCCATATCATTATTTCTACCCTTTTTCTGAAACATTTTGAGAAAAGTTCTGTCAATATTTTATCAGTCAGTTAGATCCATTtatgtgagagacacacacacacacttcctgctcTCGGGTTTCCCCCAGGTTTGTACCTTTTCTGTCTTATCAGGATGTTGAAACTTCACATTCACACACGTCTGGTTTTCCAGTGTCCATCTTAGACACATCTTTTGACAGTCTGTTGACAGTTATAATTTAGACAAATTATTGAATAGATTGACTGTATATGTAATGCATATTttaatattgttattatttagaTTTGACATAATATATTGTTTACGTTTGAATGTTTGATTTGTCTGTCTCCTGGGTAATGTGTCAAACCTTGACAGGGGTAACAAAATAATCTGTTACCTTTGTCGAGGTTTATTTTTAAACCAGATGTTTATTGTATTATTGTTGCTGAGCTGCTATATAAACTCTTATTAGAGGGCATGTCTGAGAGAATCCATGGGGAATAAGGGATTTAATTTATGTGAGTGGATGGATCTCTGTTGGGGCTTAAAACGAAATGCCTTGATATGAATTGGGGTGTATCTTGATTTACAATGACAAATGAATAAGCAGGTCATAGAAGATCCTAGAATAACGTCAAAGATTATTTGGCAATGTCCTTGTGTCACTGACGTTGTGTGTCATTTGGCGGACTCTAGCTTCTGTCACAGGCTTTCACCTCATCGAGAGGGAAGCCCGGGCTAGGCGGAGTCAGTGACAAAGAGTTGCAGTAAGTGCATGGAGTATCAGTAGGTCATTCATTCCTCAGCATAAACTGTAAAATACCAGTGCCTTGACTGCTTCTGATTCACTGAAGGACTTATTTTATTGTGTAGCATTGCTGGTTGAATAAAGTCAACTCTGTCATGACCTGGACATCATGAATCACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864691 lncRNA upstream 3478 45812314 ~ 45812513 (+) True G1629690
TU1864677 lncRNA upstream 11080 45804620 ~ 45804911 (+) True G1629677
TU1864663 lncRNA upstream 23892 45791604 ~ 45792099 (+) True G1629669
TU1864661 lncRNA upstream 28398 45787302 ~ 45787593 (+) True G1629667
TU1864653 lncRNA upstream 34065 45781515 ~ 45781926 (+) True G1629659
TU1864756 lncRNA downstream 89949 45952529 ~ 45952795 (+) True G1629749
TU1864757 lncRNA downstream 90562 45953142 ~ 45953378 (+) True G1629750
TU1864759 lncRNA downstream 92194 45954774 ~ 45955080 (+) True G1629752
TU1864760 lncRNA downstream 93305 45955885 ~ 45956110 (+) True G1629753
TU1864739 lncRNA downstream 95976 45958556 ~ 45958979 (+) False LOC110497997
XM_021574512.2 mRNA upstream 17179 45793890 ~ 45798812 (+) False LOC110497992
XM_036954928.1 mRNA upstream 17179 45793890 ~ 45798812 (+) False LOC110497992
XM_021574513.2 mRNA upstream 17179 45794082 ~ 45798812 (+) True LOC110497992
XM_036954925.1 mRNA upstream 95808 45684869 ~ 45720183 (+) False LOC110497988
XM_021574521.2 mRNA downstream 52223 45914803 ~ 45918675 (+) True LOC110497996
XM_021574522.2 mRNA downstream 66746 45929326 ~ 45960325 (+) False LOC110497997
XM_036954930.1 mRNA downstream 108080 45970660 ~ 45984005 (+) False LOC110497998
XM_036954931.1 mRNA downstream 108081 45970661 ~ 45984089 (+) True LOC110497998
XM_036953824.1 mRNA downstream 397048 46259628 ~ 46316653 (+) False LOC110498004
TU1864159 other upstream 299343 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 313728 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 416169 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 514664 45298499 ~ 45301327 (+) False LOC110497977
TU1864795 other downstream 151144 46013724 ~ 46016639 (+) True G1629779
TU1864938 other downstream 362802 46225382 ~ 46225820 (+) True G1629912
TU1864963 other downstream 395339 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1797546 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 1885117 47747697 ~ 47749082 (+) True G1631844

Expression Profile