RNA id: XM_021574522.2


Basic Information

Item Value
RNA id XM_021574522.2
length 4092
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110497997
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45929326 ~ 45960769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaaatgtgtgtttttggcCACCCATTTCAAGGATTTATGTACCAGAGTATGTTAATCATCTCTGATACATCTCATTTAACAGAAAAACATGAATAAGATGTaagtgcatctggtaacccattTATCAATTTGTGTCTTGATTAAGCCTTTTACAGGATGTCTGTGTAATATCTATTCCAGTCACAAGTAACAGATTTTACAGTAACTGCTTCTGTTGGGGTAAAACCATATAACCAAGGCGGATATGATTTTCCATGTGTGATCTTCAAAGTAAAAGCGACACCTATATCTTATTTTCCTGGGGCGTCTGCCTCTGTTACGTTGTTTATCAGGCTAAATACGGAGCAAGGAACACAGCAGCCAATCAGCTTCCAACATGAGGGGTCCCATGGTTGCTAAGCAATTGCTGCTGTACTGTAATTCTACCAGATGAGAGAGCTGCAGGGGTTCGGAAGAAAGGCAATAAGAAATCATCATAAAACCCAGAGGAGACCAATGATCCAGTGGCACCATTTTCCCCGCCCATTAAACAGTGAAAAGGACAATGCTACTAAGCACCCAAGGGGAGTAGAGTGGTGTGAGGGCTGGGCAACCATGGGTAAATAAACTGCCTGTCTTGAACCTAACAATCACAATTAGCTACATTTAAAGTGGAGAACAAGCCTCCGCTTTGGTGATCTCTGAGGGTTGTAGCCATTTACACTCGTACCCGTATACgacttgaaaatggcagatttgggtaCTGATAAACGCATACATTGGAACGCAATGGCAATAGGCCTAAAGTAACATGTTCAGAGGCGTCATGCACATCTCAGTCTGTATTGTGGGGGAGTTTGCCAAAGGTTCATCCATGTTCAATGTTTGATATGTATCTGTTAGCCTACCTATCAATTCGTTAACTGAATGTACTGTATCTCCTGTCATGTGGTAATTATCATTGACATTTACACCAAATAAGAAACCAGTTACTTCGTTTTTAAAACGTTTGTTATAAAATAGAAGGGCTACTAGATAAGGCTTTCATAATGGATTTTAGCTACCTTGGAAGAGGGTCCATCTGTTAGTTATCATGTCTGTAATGACACTAGCAGCCTACAGTCACCCATTGCGCTTAATTATCGAAGACGGACACATTCATGACTTAAAATGCGCCTGCCTGGGGGTGATGCGGGGAGTTGTTTTAAGCAGCCTAACCGGTCAAATCAACGACTAAAATGACCAAATATTTATCCATGTCCAATATTTTTAATTGCtagtagaatataacattacGTCATAGAAGTGTAGCCTGACAAAATGCCGTCCTGAATGGTCTGAGGCAAACGCATTGTGACAACCTCAAACTGGTCGAAAAGGATCTGAATAATATTTAGTCCAACTGTTGAAATATCGCAGACAGGGACCAGCAACCCCACAGATACATCTCACCTTCCTAATTTCGGAGAGGACAATGCGTCGAAACGATACCGCTCCCACTACACGCAAGTTGCAGGGAGGGATCTTCTTACCAAAGCCTCAGAATGCCATCACCATTGCGGTGTCATCGCGTGTCCTCTTCAACATGGATAAGGAGCAGCAAATCTACGAACAGAAAGGCATGGAGGACTACCTCAAGTACCAGATAGAGCATGAGATGGAGCCCTTCGCCCCCGGCCCTGCTTTTCCTTTCGTTAAGGCTCTGGAGGCAGTGAATACTCGGCTGAGGGAGCTGTACCCTGAGAGTGAGGAGCTCTTTGACGTTGTGCTCATGACCAACAGCCACGCACACGCCGGTCTCCGACTCATAAACACCATCAACCACCATCAGCTCTTCATTGAGCGTTTCTGTATGACGGGTGGGAACAGTCCCATTGGGTACCTGAAGGCTTACCACACTAACCTGTACCTGTCTGCTGACCCCATGAAGGTCCGAGAGGCCCTGGAGGAGGggatcGCAGCAGCCACCATGTTTAATCCaccagagaagagaacagaagtgTCAGAGACTCAGCTGCGGGTGGCCTTCGATGGGGACGCagtgctcttctctgacgagtCAGAGCGCATCTTTAAGGCCCACGGACTGGACAAGTTCTTTGAGCATGAGAAGACACACGAAAACACGCTTCTTGATCATggACCACTGAAAGGGTTCCTGGAGTCTCTGGGGAAGCTGCAAAAGAAGTTCTATGCCAAGGATCAGCGTCTGGACTGCCCCATCCGTACCTACCTGGTGACGGCACGCAGCGCAGCCAGCTCAGGCACCCGGGCCCTGAAGACACTGCGATCCTGGGGCCTGGAGACAGACGAGGCCCTCTTCCTTGCTGGGGCCCCTAAGGGGCCAATGCTGGAGAAGATCCGGCCTCACATATTCTTTGACGATCAGATGTTCCATGTGGAGGGAGCTTCGCAGCTGGGGACCGTGGCAGCTCATGTGCCATATGGTGTGGCTCAGAAACTGCCCCAGCAGAAGCCTGCTAAGGAGAACACGAAAGACTTTAACGCTGCCACCAAGTAGTCTGGATTTCACTCTCTTCCCTAACCCAAGGGACAATAAAACAACATTGTGTATTTGAATGAGACAGTCCTTTTCAGTGCCCTCAGTTTTCTGGGGAGAGAATCACATGACAATGGGAGAAGCATAGAGGGAGGGCATGCCATTTTCACCCGTGTCATGTGTCATCACAAGAGACAGTGCCAGTAGATGTAAAACAAAACGTCAAATATCGTATGCCCAAAAAGTGCTGTACGTACATATCCAGATCTTGACCTACCAAGGTAAAAGAACTGGAATTGTATCTAATTAACTCTGTCAGACCAGGAAAAATACAATTTTACAGCAATTCCTCAAATAGAATCTGCACACAATTGCAAGGTCTATCGCCAGTCCTGCAATGATGTAATAatgctgtgaaattgtgaaaattttAATACCATTTTAGTGttagaaatgtttgaatataaatgTCTCTTTGCTaataagctatttttgtttcattttaaTTGAATACAATCAccgtaaggtacttaattgttacccagaaatgatttaataTTTAGATGGAAACAGCTCCATTGGAACTTTACCATAGCATTAACGTTCCGAAAACCATCCTTTACATCCAAAAATCCACCCAAATATAGACTATACAATAGTTGTGGAGTTTACAGATCTGTGAATTGTAGCAACATCATGATGAAACTCCAGAACCCCAAAATGTATAAATGCATTATCTCAGTCTATACAGATATTTGGCAATACAGTATTTGTAACATTGAGGGGGAGGGGTGTTTATAAACCTACAGTAGACTGTACCTGTATCATTTCAGCATATCACATTTATCTTAGGTTGAAAACATGTTTACGGAATATGTATGGCATGTTATTGACGTCATTGTTTGTTCTATTATTTTGTTTCTAATCTAGGAAACTTTATTTAGTACCTTTGGTGTACTTTTGTTTGCTCCTCATGCAAGTTACTATATGTGCTGTATGGCTGCGTTTACAAAGACAACCCAATTCTGATCTATTTCcaataattggtcttttgaccaagatattagatatttttcagagctgaagACCAATTAGTGATAAAAAAAGATCAGAACTGGGCAGCCTGTGTAAACATTTAGTGCAATCTTAGCTCCTTTGGACGTCCCTagcctaaaccctaaccttaacaattCTAAATGTCCATTTAAATGGTGTAGGGACGTCCTAAGAATCTTGGATaccctgtctaaacgcagcctatgCAATGTTAACTTAAAGTGCAAAAATGGACAACCTCCTCTCACTTTATAAACATGGGCACTGAGCCATTCTGTAAAAACATGGCTTCTGTGAGGAGATGGCATAATGTGTAAATTATATGGCTTTTATATTTGTTTATTGACATTTATTCCATTCAATCATCCCATATCCTGTGTTATGATACTGGTGGTTTGTACGGTTGTGGCTGTCAGTACAGCTTCATTTAGTCACATCAAGAAAAACTACAGTTTGTAGCCATGAACTACTACTGGTAGGGCCAGTCATGTATAGCCATAAGGGACATTTTGGTGAcctgcatgagagcatcagctgttccggacgactgtgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864683 lncRNA upstream 66747 45862271 ~ 45862579 (+) True LOC110497991
TU1864691 lncRNA upstream 116813 45812314 ~ 45812513 (+) True G1629690
TU1864677 lncRNA upstream 124415 45804620 ~ 45804911 (+) True G1629677
TU1864663 lncRNA upstream 137227 45791604 ~ 45792099 (+) True G1629669
TU1864661 lncRNA upstream 141733 45787302 ~ 45787593 (+) True G1629667
TU1864737 lncRNA downstream 2283 45962608 ~ 45963149 (+) True G1629734
TU1864768 lncRNA downstream 25583 45985908 ~ 45986134 (+) True G1629761
TU1864774 lncRNA downstream 30440 45990765 ~ 45991084 (+) True G1629767
TU1864776 lncRNA downstream 35498 45995823 ~ 46004684 (+) False G1629769
TU1864777 lncRNA downstream 35498 45995823 ~ 46004684 (+) False G1629769
XM_021574521.2 mRNA upstream 10651 45914803 ~ 45918675 (+) True LOC110497996
XM_021574509.2 mRNA upstream 66746 45815991 ~ 45862580 (+) False LOC110497991
XM_036954930.1 mRNA downstream 10335 45970660 ~ 45984005 (+) False LOC110497998
XM_036954931.1 mRNA downstream 10336 45970661 ~ 45984089 (+) True LOC110497998
XM_036953824.1 mRNA downstream 299303 46259628 ~ 46316653 (+) False LOC110498004
XM_021573120.2 mRNA downstream 497948 46458273 ~ 46461747 (+) False rhd
NM_001124663.1 mRNA downstream 498034 46458359 ~ 46461750 (+) True rhd
TU1864159 other upstream 412678 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 427063 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 529504 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 627999 45298499 ~ 45301327 (+) False LOC110497977
TU1864795 other downstream 53399 46013724 ~ 46016639 (+) True G1629779
TU1864938 other downstream 265057 46225382 ~ 46225820 (+) True G1629912
TU1864963 other downstream 297594 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1699801 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 1787372 47747697 ~ 47749082 (+) True G1631844

Expression Profile