RNA id: TU1864738


Basic Information

Item Value
RNA id TU1864738
length 570
lncRNA type sense_over
GC content 0.47
exon number 1
gene id LOC110497997
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45929326 ~ 45960769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACATCAAGAAAAACTACAGTTTGTAGCCATGAACTACTACTGGTAGGGCCAGTCATGTATAGCCATAAGGGACATTTTGGTGAcctgcatgagagcatcagctgttccggacgactgtgtgatcatgctgtaagacctttaaacaggtccacattcacaaggccacagagCCAGATGTattaccagaacgtgtactcTGAACAtccgctgaccaactggcaagtgtcttcactgacattttcaacctctccctgtctgagtctgtaataccagcatgtttcaagcagaccaccatagtccctgtgcctaagaacactaaggtaacctgcctaaatgactacagacccgtggcactcacgtctgtagccatgaaatgctggtcatggctcacatcagcaccattatcccagaaaccctagacccactccaatttgcatacctccccaacagatccacaaatgatgcaatctctatagcactccacactgccctttcagacctggacaaaaggaacaccaatgtgagaatgctaatcattgactacagctcagcgttcaacaccatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864739 lncRNA upstream 1221 45958556 ~ 45958979 (+) False LOC110497997
TU1864760 lncRNA upstream 4090 45955885 ~ 45956110 (+) True G1629753
TU1864759 lncRNA upstream 5120 45954774 ~ 45955080 (+) True G1629752
TU1864757 lncRNA upstream 6822 45953142 ~ 45953378 (+) True G1629750
TU1864756 lncRNA upstream 7405 45952529 ~ 45952795 (+) True G1629749
TU1864737 lncRNA downstream 1839 45962608 ~ 45963149 (+) True G1629734
TU1864768 lncRNA downstream 25139 45985908 ~ 45986134 (+) True G1629761
TU1864774 lncRNA downstream 29996 45990765 ~ 45991084 (+) True G1629767
TU1864776 lncRNA downstream 35054 45995823 ~ 46004684 (+) False G1629769
TU1864777 lncRNA downstream 35054 45995823 ~ 46004684 (+) False G1629769
XM_021574521.2 mRNA upstream 41525 45914803 ~ 45918675 (+) True LOC110497996
XM_021574508.2 mRNA upstream 97620 45817008 ~ 45862580 (+) False LOC110497991
XM_036954930.1 mRNA downstream 9891 45970660 ~ 45984005 (+) False LOC110497998
XM_036954931.1 mRNA downstream 9892 45970661 ~ 45984089 (+) True LOC110497998
XM_036953824.1 mRNA downstream 298859 46259628 ~ 46316653 (+) False LOC110498004
XM_021573120.2 mRNA downstream 497504 46458273 ~ 46461747 (+) False rhd
NM_001124663.1 mRNA downstream 497590 46458359 ~ 46461750 (+) True rhd
TU1864159 other upstream 443552 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 457937 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 560378 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 658873 45298499 ~ 45301327 (+) False LOC110497977
TU1864795 other downstream 52955 46013724 ~ 46016639 (+) True G1629779
TU1864938 other downstream 264613 46225382 ~ 46225820 (+) True G1629912
TU1864963 other downstream 297150 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1699357 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 1786928 47747697 ~ 47749082 (+) True G1631844

Expression Profile