RNA id: XM_036954930.1


Basic Information

Item Value
RNA id XM_036954930.1
length 527
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110497998
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45970660 ~ 45984089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcaacttccagtAGACAGGGGAACagctagtacgctcaactgaaatgATACTGTTCTGCAACTCATTATGTGCCGTACAGCCTCTTTCCACCAGGAGCAGCGCCTCTCTCGAAGATTAAAAACAATAAATGATCAAGGCCTACCACTGAACAACGCCTACAACGGGAAGCTATTTGAATCCAAGAAAATGGTGTCTGTATCTGTGATTGCCATGGCAGTTGGGACTGGTACGGCGGCAGTGCTCATTGCCCCTGTTGCTTTGGGAGCGATGGGATTCGGTGCTGCTGGGGTTGCAGCTGGATCAACCGCAGCAGGCATGATGTCTTCTGCAGCCGTGGCCAATGGAGGTGGGGTAGCAGCAGGGAGTCTTGTTGCTGCTCTACAGTCAGCAGTCCAATTTATGTCCAATTTATCTCGTTGTTCCTCTAGGAGCTGCAGGACTCACCGGTGTGGCCACAGCTGTTGTGGGAAGTGTCGGCGCGGCAGCCGGTGGAGCGGTGGGATGGGTGTCCTCTAAGTTTAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864737 lncRNA upstream 7511 45962608 ~ 45963149 (+) True G1629734
TU1864738 lncRNA upstream 9891 45960200 ~ 45960769 (+) True LOC110497997
TU1864739 lncRNA upstream 11681 45958556 ~ 45958979 (+) False LOC110497997
TU1864760 lncRNA upstream 14550 45955885 ~ 45956110 (+) True G1629753
TU1864759 lncRNA upstream 15580 45954774 ~ 45955080 (+) True G1629752
TU1864768 lncRNA downstream 1903 45985908 ~ 45986134 (+) True G1629761
TU1864774 lncRNA downstream 6760 45990765 ~ 45991084 (+) True G1629767
TU1864776 lncRNA downstream 11818 45995823 ~ 46004684 (+) False G1629769
TU1864777 lncRNA downstream 11818 45995823 ~ 46004684 (+) False G1629769
TU1864779 lncRNA downstream 11818 45995823 ~ 46004684 (+) False G1629769
XM_021574522.2 mRNA upstream 10335 45929326 ~ 45960325 (+) False LOC110497997
XM_021574521.2 mRNA upstream 51985 45914803 ~ 45918675 (+) True LOC110497996
XM_021574508.2 mRNA upstream 108080 45817008 ~ 45862580 (+) False LOC110497991
XM_036953824.1 mRNA downstream 275623 46259628 ~ 46316653 (+) False LOC110498004
XM_021573120.2 mRNA downstream 474268 46458273 ~ 46461747 (+) False rhd
NM_001124663.1 mRNA downstream 474354 46458359 ~ 46461750 (+) True rhd
XM_036954938.1 mRNA downstream 651952 46635957 ~ 46718146 (+) False LOC110498012
XM_036954936.1 mRNA downstream 651958 46635963 ~ 46718146 (+) False LOC110498012
TU1864159 other upstream 454012 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 468397 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 570838 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 669333 45298499 ~ 45301327 (+) False LOC110497977
TU1864795 other downstream 29719 46013724 ~ 46016639 (+) True G1629779
TU1864938 other downstream 241377 46225382 ~ 46225820 (+) True G1629912
TU1864963 other downstream 273914 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1676121 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 1763692 47747697 ~ 47749082 (+) True G1631844

Expression Profile