RNA id: XM_021574567.2



Basic Information


Item Value
RNA id XM_021574567.2
length 2342
RNA type mRNA
GC content 0.47
exon number 4
gene id zbtb8a
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46936326 ~ 46940595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCCGTTTTTTCTCGGTCTATAAACGGGTTTCGGTCTTTAGGGCTGAGCAGGAAGTGGAGCGAATGTGTACCCCGAACCAGTAAAAGAAGGAGTAAAATTGCcaactaaaaataaaaaaaatggcaaTGGTGACAGAGATGGGGGCGAATTTGGCATATCGGGCAACGGGCGAACCAAATCACCTACAGGCCCAGCGGTGGTACCATACGGACATCACAGCCAATCACCAGAGCTATCTGCTGAAGCAGTTGGATAATCAGAGGCGTCAGGAGCTGTTCTGTGACTGCAACGTTCTGGTGGAGGGCCAGCTTTTCAAGGCCCACCGCAATGTCCTTTTCGGCAGCAGCGGCTACTTCCGTATGCTGCTTTCCCATGGGGCCGATGACAACGCTGAGCCGGTCAGCACCTCCTTCGAGGTCTTTAGCCCCGACACGTTCACCGTCATCCTGGACTTCATCTACTCTGGACAGCTGGACCTCTCCAGCCACAATGTGATCGAGGTGATGTCCGCTGCCAGCTACCTGCAGATGAACAACGTCATCAGCTACTGCAAGGACTTCATCAAGTCCTCCCTGGAGATCAGTGCCAAAGAGGATGATGTCCACTACCTCAGCTTGTCTGAGAACAGCTATCCTCAGGCGGGTAGGGAGGACAACGCCATAGACCACCAAGCAGCCACCTCCACCAgccctccctctgccctctgGACCCACGACAGCTCCAGGCCCCAGTCCTCCAGGTACCTGGTGAAGGAGTTGGACCTGGATGCTGCAGTCCTGAAGCAGGATCTCAGCTCCCCTcagcccagccagcagcacaGCCCTGAGGTGGAGGTGCTGCCGGATGCAGAGGAGCCCCAGTTTGCCCGGCCTCGTGCGGAGCGCAGACGGAAAGGAGCTGGCAAGAGGAAACCCTACTGCATGCGCTCCTCAACAGATGAGGCCCTGGCCATACAAGAGGCCCGGTCACAAACGGCACAGAAGGCAGACGAACTGTATGCCACTCTACCTACCATTGTGGGTGTTGTGGGACTCTTTAACAAAGACCCTAACCCCTCCATGCGCTTCAAGTGCCCGTTCTGCACTCACACGGTCAAGAGGAAGGCAGACCTGAAGAGGCACCTGCGCTGTCACACGGGCGAGCGGCCGTATCCCTGCCAGGCCTGCAACAAACGCTTCACCCGCCTGGAGCACCTTCGCAGCCACTTCGAGACGATCCATCAGGCCAGGAAGCTGGTGTGCAGGAAGTGTAAGCGTCAGGTGACAGAGCAGAGTGGGCGGGTAGTGTGTGAGGGCTTGCGGCGCTACCGAATGTGTACTGAGTGCATCCAGGAGACGGGCTGTGAGGATCTGCCTATCGATGGCCTGGAGGGGGCTAGCGAGGAGCCTGCCCTGTTGCTGGGGGTGgacggggaggaggaggatggagacacACAGAGGAGTTGGCTGGTAACCGATGATGACGACCTGGCAGAAGACTCAGGAGCTGACCTTATCATCCAGGAAGTGGAAGACAGCGATGAGGAGCTtcagtgaaagtgtgtgtgtgtgtgcttgcttgcttgcttgcttgggCACTTTTGTGTATGAGTGTCTGCTATATTTCTCAACGTTTATTGTCAGTGATTATATATAAATAAGCATCCACATTTTTAATGACTATTCATTGGAGAAAGTTATGTTGAATAATAATTGTTTATAACTGTAAATATTAGAATTTGTAATATAATAGACTGCTTTTATTCTTAACAAGACGTTTTCAAGCTTGTATTTTCAGTTTAATATGAGAAGAAAGTGTTTGATATTCAATGTACAATGTTACCATTTTGTTTGTCAGCTTTTATCTTTCTTTGCATCAAGAATATTAACATTAATATTAACAATATTATTTCCAGCCAAATACTCCTCACACCTTTGATGTTAGCGAGGATTTTAAGGGACGTCAATGGTATTTATATATGTTTGCCAATGCCTTTCATGTTAAGTCAACTACAGTGGACAGTGTTTGCACGTTTTTGTGtagagaatgttttactctgttaattgtttactattaattgtttgtttttatttacaaATGAATTACTACACATTATTTTGACCATGATTATTGTTGATGTTTATTTATTATCTTTTATACTTATTTTACACacataaaatgtatatttttataaGAATTCCAAGTTGACTTTGTTTTATTGATTCATCAGGAAATGTCTTTCAATTTGAGTTTGATTATCTATGGTGGGGTCTAGGGCCATATTGCGGCTGTTCTTTGCTCACAAATTATTTATAATGTTTTGAACCAAAGTCAAAATAAAGGTTACGAGATAGAATAAAA

Function


GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K10495 ZBTB8; zinc finger and BTB domain-containing protein 8

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1866267 lncRNA downstream 56294 46870675 ~ 46880032 (-) True G1631121
TU1866263 lncRNA downstream 107860 46827960 ~ 46828466 (-) True G1631118
TU1866209 lncRNA downstream 131513 46803781 ~ 46804813 (-) True LOC110498016
TU1866240 lncRNA downstream 171927 46761293 ~ 46764399 (-) True LOC110498013
TU1866239 lncRNA downstream 186589 46749155 ~ 46749737 (-) True G1631094
TU1866365 lncRNA upstream 60579 47001174 ~ 47001607 (-) True G1631205
TU1866366 lncRNA upstream 65089 47005684 ~ 47005895 (-) True G1631206
TU1866373 lncRNA upstream 101397 47041992 ~ 47042209 (-) True G1631213
TU1866509 lncRNA upstream 370960 47311555 ~ 47313215 (-) True G1631345
TU1866632 lncRNA upstream 412129 47352724 ~ 47377401 (-) True G1631454
XM_021574565.2 mRNA downstream 620 46932146 ~ 46935706 (-) False LOC110498025
XM_021574566.2 mRNA downstream 620 46932146 ~ 46935706 (-) True LOC110498025
XM_036954945.1 mRNA downstream 65305 46858159 ~ 46871021 (-) True tmem54a
XM_021574559.2 mRNA downstream 65307 46858159 ~ 46871019 (-) False tmem54a
XM_021574554.2 mRNA downstream 118082 46808960 ~ 46818244 (-) True zgc:154055
NM_001165248.1 mRNA upstream 678 46941273 ~ 46946804 (-) True gale
XM_021574568.2 mRNA upstream 14817 46955412 ~ 46960743 (-) True LOC110498027
XM_036954951.1 mRNA upstream 42095 46982690 ~ 47172797 (-) False LOC110498370
XM_036954949.1 mRNA upstream 42095 46982690 ~ 47172798 (-) False LOC110498370
XM_036954948.1 mRNA upstream 42095 46982690 ~ 47172799 (-) False LOC110498370
TU1866265 other downstream 105676 46830334 ~ 46830650 (-) True G1631120
TU1866141 other downstream 306820 46619207 ~ 46629506 (-) False G1631005
TU1865759 other downstream 930449 46003765 ~ 46005877 (-) False LOC110498001
TU1861812 other downstream 3527217 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 4097892 42759294 ~ 42838434 (-) True G1626324
TU1867475 other upstream 975700 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 1027919 47968514 ~ 47970332 (-) True G1632228
TU1867471 other upstream 1037111 47977706 ~ 47980466 (-) False G1632192
TU1867476 other upstream 1037111 47977706 ~ 47980466 (-) False G1632192
TU1867574 other upstream 1171318 48111913 ~ 48147170 (-) False LOC110498045

Expression Profile