RNA id: XR_005037761.1


Basic Information

Item Value
RNA id XR_005037761.1
length 1600
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110498031
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47417390 ~ 47447993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTATTGATTCAATATTGTATATATGTGGAGAGAAGCCTATAATGCAATAGCTTTTTCAGGAGCAATTTGTTAAAACTCGCTTTCAAGTATTCGGAGTATAAAGCTACTTGGAGGTCCTTTGTATGTAAATAGGGTGTAAAAAAAAAGGCCCTTCCCATCTTTGTAATTAATTGACACGTTATACCACTCATCATGTTCTGAAGCACCAATGGTAGAGGCTCGGATCTCCCCAAAACCCACAATTTCACATCTGCAAACACTGTCTTCATCCACTTGACTCCCAAGACCCGCCCACACGTGGCCAACCTTTTGCGTTTTTAATGCTTTTTCACTGCAGGTTCATCTGTTGAGACCAACCTTATATGGGCTGATCGGACCGGTAATGGCTTATTTCTCCGTAGCACCCAGCAGTAGCACAGTATCAATGAGACAGATATAGCACTTCAGCCACTTTGGCATTCTTCCTGGACTTACAGAACTGATTCCTCTACTACTTGGATAGGCAATGGTTATCGACAGAGGCTCATGATTTTCTTTGAATAGTTCAAGGTAAAACAGCACTGAGATATCATTTTTTCTGAACTGcgattgtgttttgtgttttaaaGCAGCGGATTGCCAAACTGGTGCAGCAAATTTCCAGCATACATTTCCCCAGAATATGTCGTTGACCAACACAAAGACCGGCTTTTCTGTGAAGGACATTTTGGACCTCCCTGACACGAATGATGAAGAAGGATCTATCACTGGACCGGAGGAAGATAACGAGGGATCGGAGACGACAAAACCCACTGGAGTTTTGGTACAAAGTCCGCTAGAAAACGTTCAAAATCTGCCTATAAAGAACCGCTTTTATGATAGTAGTGACAATCCTTACACAAGATGGCTTGCCACCACAGACACTCTCCAATATTCACTGCATGGTCTTTCAGCAAGTTCTCAAGACTCAGCCAAGTCCCCAGAACCCTCTGCGGACGAATCGCCAGACAATGACAAGGAAACGTCAAGCAACGGCAGCGACTCCGGTAAGAAGCGAAAAAGAAGAGTGCTGTTTTCCAAGGCACAGACGTACGAACTTGAGCGTCGGTTTAGGCAACAGAGATACCTATCCGCGCCAGAGAGAGAACACCTCGCGAGTTTGATTCGCCTGACACCAACTCAAGTGAAAATTTGGTTCCAGAATCATCGGTACAAAATGAAGAGAGCGCGCGCTGAAAAAGACCTTTTCTAAACTCTAACAAATGATGGAGAACCCCTGGAAAGACCTACTTCTTCACTACCAGCTGGTCTATGCTGGCCTTCACAGTATAAAAACTGAAGCTGGAGGAGCTGAAATGCTTCGGGTGAAGGCTCAGCTTCCCAGAGAATATAGCTGGATGacacacacagcaacagagaTATGAGCAAGAGATATGTAACCACCAGAAGCCAGTAAGGCATAGTGTTTAGAACATTGTTTGTAGAGATGTAATGTATAAGCCTAACATAGTTCTGCATTCTATATGATGAAGAATCAATACACATTCTATGTTATATTTCTAAACACTATTTCTTTAGTGTTTGTCTTTGATCGTGTAAAGTGAGGTGAATAATGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1866632 lncRNA downstream 44315 47352724 ~ 47377401 (-) True G1631454
TU1866509 lncRNA downstream 108501 47311555 ~ 47313215 (-) True G1631345
TU1866373 lncRNA downstream 379507 47041992 ~ 47042209 (-) True G1631213
TU1866366 lncRNA downstream 415821 47005684 ~ 47005895 (-) True G1631206
TU1866365 lncRNA downstream 420109 47001174 ~ 47001607 (-) True G1631205
TU1866828 lncRNA upstream 78714 47522027 ~ 47522243 (-) True G1631621
TU1866835 lncRNA upstream 93554 47536867 ~ 47537092 (-) True G1631628
TU1866845 lncRNA upstream 113389 47556702 ~ 47556969 (-) True G1631638
TU1866936 lncRNA upstream 184732 47628045 ~ 47628728 (-) True G1631721
TU1866938 lncRNA upstream 187595 47630908 ~ 47631112 (-) True G1631723
XM_021574570.2 mRNA downstream 27510 47389804 ~ 47394206 (-) False LOC110498030
XM_021574572.2 mRNA downstream 27510 47389804 ~ 47394206 (-) True LOC110498030
XM_036954948.1 mRNA downstream 248917 46982690 ~ 47172799 (-) False LOC110498370
XR_002469762.2 mRNA upstream 263189 47706502 ~ 47725019 (-) False LOC110498033
XM_021574577.2 mRNA upstream 283700 47727013 ~ 47729833 (-) False LOC110498035
XM_021574578.2 mRNA upstream 283700 47727013 ~ 47747227 (-) False LOC110498035
XM_036954956.1 mRNA upstream 283700 47727013 ~ 47747466 (-) True LOC110498035
XM_021574579.2 mRNA upstream 326574 47769887 ~ 47839786 (-) False LOC110498037
TU1866265 other downstream 591066 46830334 ~ 46830650 (-) True G1631120
TU1866141 other downstream 792210 46619207 ~ 46629506 (-) False G1631005
TU1865759 other downstream 1415839 46003765 ~ 46005877 (-) False LOC110498001
TU1861812 other downstream 4012607 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 4583282 42759294 ~ 42838434 (-) True G1626324
TU1867475 other upstream 472982 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 525201 47968514 ~ 47970332 (-) True G1632228
TU1867471 other upstream 534393 47977706 ~ 47980466 (-) False G1632192
TU1867476 other upstream 534393 47977706 ~ 47980466 (-) False G1632192
TU1867574 other upstream 668600 48111913 ~ 48147170 (-) False LOC110498045

Expression Profile