RNA id: XM_036954953.1


Basic Information

Item Value
RNA id XM_036954953.1
length 1547
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110498031
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47417390 ~ 47447993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGATATTTCAGTTAGAACGAGCTGTTTTAACGCCGGCTACACCACTCAGCCCCTTCCAGTCATCAATCACCAGCAGCGGATTGCCAAACTGGTGCAGCAAATTTCCAGCATACATTTCCCCAGAATATGTCGTTGACCAACACAAAGACCGGCTTTTCTGTGAAGGACATTTTGGACCTCCCTGACACGAATGATGAAGAAGGATCTATCACTGGACCGGAGGAAGATAACGAGGGATCGGAGACGACAAAACCCACTGGAGTTTTGGTACAAAGTCCGCTAGAAAACGTTCAAAATCTGCCTATAAAGAACCGCTTTTATGATAGTAGTGACAATCCTTACACAAGATGGCTTGCCACCACAGACACTCTCCAATATTCACTGCATGGTCTTTCAGCAAGTTCTCAAGACTCAGCCAAGTCCCCAGAACCCTCTGCGGACGAATCGCCAGACAATGACAAGGAAACGTCAAGCAACGGCAGCGACTCCGGTAAGAAGCGAAAAAGAAGAGTGCTGTTTTCCAAGGCACAGACGTACGAACTTGAGCGTCGGTTTAGGCAACAGAGATACCTATCCGCGCCAGAGAGAGAACACCTCGCGAGTTTGATTCGCCTGACACCAACTCAAGTGAAAATTTGGTTCCAGAATCATCGGTACAAAATGAAGAGAGCGCGCGCTGAAAAAGGTATGGAAGTgacccatctcccctctccccggCGGGTGGCCGTACCTGTCTTAGTCAGGGATGGAAAGCCTTGTCATACTCTTAAAGCTCAGGACTTGGCGGCCACTTTTCAGGCTGGATTCCCCCTCTCGGCGTATAGCGCCCAGACCCTTCATCAAATGCAATATAATGCTCAGTACTGCGCCGCCACCACGCCACAATTCCCTTCAGCACATCACTTGGTGCAAACGCAACAGTGGACTTGGTGAACTAGTTGAGACTGACGGGGCTGCTGTTTAGGAGCACGATAGGGATTTCACTAGAAAATAAAGACTTTTCATTTTGCAGCTTGACCCATATCTACCATTTTTTCGGGGCTAATATGTGCGCCGTGTTTACATGTTTTCGTTAAGAGAACTGGGTCCAGCCTCTCCCGAGATTTAAGAATGTCAATGCTCTTGTGAAATTTTGTACAGTATGTttctgtgttgtagatatgttttatttttgtcATTCGTGTTATAAGCACGTGCAAAACCACTTTATAATTATGGAATATTTTATTTCTTGCTTCTTTTACAATGGACCGAAAATATTTATGGCCATGAATAAACATTGGCAACTTTTAGCTTTTTtccctttgtttttgttttttgtaaaTACTTTGTGGTAATTATTTGCAACCTAGAAACATGTCAGGATCGTATACGTGGAGATATACATATTTCCAATTCAAAAAGAAGGAAGAATTTCTGGCGGAATTGTCATGACTGTCTAACAGAGCCCATATTATTATGTGAATAACAGGTAAATCGCGCGCTGATGGGGAAATATCCCATTTTTTTATAAGGATTTTAATAAAATGCTGTGTTTCAGAAATTA

Function

GO:

id name namespace
GO:0021530 spinal cord oligodendrocyte cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0014044 Schwann cell development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008347 glial cell migration biological_process
GO:0021508 floor plate formation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K08029 NKX2-2; homeobox protein Nkx-2.2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1866632 lncRNA downstream 63105 47352724 ~ 47377401 (-) True G1631454
TU1866509 lncRNA downstream 127291 47311555 ~ 47313215 (-) True G1631345
TU1866373 lncRNA downstream 398297 47041992 ~ 47042209 (-) True G1631213
TU1866366 lncRNA downstream 434611 47005684 ~ 47005895 (-) True G1631206
TU1866365 lncRNA downstream 438899 47001174 ~ 47001607 (-) True G1631205
TU1866828 lncRNA upstream 74034 47522027 ~ 47522243 (-) True G1631621
TU1866835 lncRNA upstream 88874 47536867 ~ 47537092 (-) True G1631628
TU1866845 lncRNA upstream 108709 47556702 ~ 47556969 (-) True G1631638
TU1866936 lncRNA upstream 180052 47628045 ~ 47628728 (-) True G1631721
TU1866938 lncRNA upstream 182915 47630908 ~ 47631112 (-) True G1631723
XM_021574570.2 mRNA downstream 46300 47389804 ~ 47394206 (-) False LOC110498030
XM_021574572.2 mRNA downstream 46300 47389804 ~ 47394206 (-) True LOC110498030
XM_036954948.1 mRNA downstream 267707 46982690 ~ 47172799 (-) False LOC110498370
XR_002469762.2 mRNA upstream 258509 47706502 ~ 47725019 (-) False LOC110498033
XM_021574577.2 mRNA upstream 279020 47727013 ~ 47729833 (-) False LOC110498035
XM_021574578.2 mRNA upstream 279020 47727013 ~ 47747227 (-) False LOC110498035
XM_036954956.1 mRNA upstream 279020 47727013 ~ 47747466 (-) True LOC110498035
XM_021574579.2 mRNA upstream 321894 47769887 ~ 47839786 (-) False LOC110498037
TU1866265 other downstream 609856 46830334 ~ 46830650 (-) True G1631120
TU1866141 other downstream 811000 46619207 ~ 46629506 (-) False G1631005
TU1865759 other downstream 1434629 46003765 ~ 46005877 (-) False LOC110498001
TU1861812 other downstream 4031397 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 4602072 42759294 ~ 42838434 (-) True G1626324
TU1867475 other upstream 468302 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 520521 47968514 ~ 47970332 (-) True G1632228
TU1867471 other upstream 529713 47977706 ~ 47980466 (-) False G1632192
TU1867476 other upstream 529713 47977706 ~ 47980466 (-) False G1632192
TU1867574 other upstream 663920 48111913 ~ 48147170 (-) False LOC110498045

Expression Profile