RNA id: XM_036954956.1


Basic Information

Item Value
RNA id XM_036954956.1
length 1721
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110498035
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47727013 ~ 47747466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGAACAGGCTCCCGATGGGTGGGGTTTACACGTTAGGACCCTTGGATTTGCCCAAACTGTGTTACTCCTCGGTTGGCAACATGAACACAGGCCTGGGCATGAACTCAATGAACACCTACATGAGCATGTCGGGCATGAGCACCACGGCCAACATGGCAGCCAACTCCATGAACATGTCATACGTGAACACAGCCATGAGCCCCTCCATGGCCGGCATGTCACCAGGCTCTGGAGCCATGAACAGCATGGGCGCGGGCATGACAGCCATGAGCGCTGCGCTCAGCCCCAACATGAGCCCCATGACCGCGCAGCCTCAGTCCATGAACTCCCTAACCTCCTCCTACGCCAACATGAACGCCATGAGCCCCATGTATGGACAGTCCAGCATCAACAGATCTAGGGATCCCAAGACATACCGGAGGAGCTACACTCACGCCAAGCCCCCATACTCTTACATTTCCCTCATCACTATGGCTATACAACAGTCCCCCAGCAAGATGCTAACGCTGGCTGAGATCTATCAGTGGATCATGGACCTTTTCCCGTTCTACCGACAGAACCAGCAACGCTGGCAGAACTCAATTCGCCACTCTCTATCCTTCAATGATTGTTTCCTCAAAGTGCCTCGATCCCCAGATAAGCCTGGAAAGGGCTCGTTTTGGACCCTCCACCCGGATTCGGGGAACATGTTCGAGAACGGCTGCTATCTGAGGAGGCAGAAACGGTTTAAGTGTGCCGGCCAAAAGAAGATGTGCAAGGAGTCGGGTCGGAAGACATCAGAAGGCGGCTCCAACAGCAGCTCGGAGAGTTGCAATGGCAACGAGTCCCCCCATTCCAACCTGTCCCCCAACGACCACAAAAGGTCTCTGTCAGACATGAAGTCGACCCAGGCTCTGAGTCCAGAGCACGCTACCTCACCGGTGTCCCATTCCCAGGCACATGGACACCTCATGTCCCAGCATCACTCGGTCCTCGCACACGAAGCACACCTGAAACCCGAGCATCACTACTCGTTCAACCACCCCTTTTCCATCAACAACCTTATGTCCTCTGAGCAACAGCATCACAAAATGGATCTAAAGACTTACGAGCAGGTGATGCACTATTCCGGCTACGGTTCCCCCATGGCCGGGGCGCTATCCATGGGTTCAATGGGCAAAACGGGCTTAGATTCCTCGTCAATACCCGCTGATGCATCTTACTATCATGGCGTCTACTCCAGGCCTATTATGAACTCCTCATAAACGTTGACCCCAAACCTCAAACAGACCTTTTTCAGCAATTTGTACATTTGTAAAATTATAGTTTGTGCATATTATGTAGGCCTATTCCATATATTTTTGACGTTTCCCACTGATTTAGTTGTCAAGTTGGTTTAGTAATTATTTTGTAAAGGAATGTTAATAATAATGTGTCAAACATCTGTTTAAAAGTCTGCTTTGAGAATGGACCAAAAGATGATTAGCCTACTGTAAAATGCATCTGAATAGcgggaattttaaatgattttaaTGCATTGTGGGAGACTGAAGTTCTTCAATCAATTGTGTAATTCTTATTTATGGCTTGTAAATGTGTATTGTTGTAGTTGACAACAAGAACAGAATCTATATTAAAGTGTTATTTGGATTTTCTTCTGAACACAATggtggattttttttaaaatgtatagcCTACGCAGCAATACAATTATgataataataaaatattaaatatta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867030 lncRNA downstream 2119 47707063 ~ 47724894 (-) True LOC110498033
TU1867031 lncRNA downstream 20549 47706241 ~ 47706464 (-) True G1631813
TU1867012 lncRNA downstream 23079 47703561 ~ 47703934 (-) True G1631794
TU1867006 lncRNA downstream 27114 47699682 ~ 47699899 (-) True G1631788
TU1867001 lncRNA downstream 30549 47696129 ~ 47696464 (-) True G1631783
TU1867341 lncRNA upstream 2294 47749760 ~ 47750706 (-) True G1632075
TU1867367 lncRNA upstream 31252 47778718 ~ 47849907 (-) True G1632099
TU1867454 lncRNA upstream 151702 47899168 ~ 47901334 (-) True G1632179
TU1867519 lncRNA upstream 220498 47967964 ~ 47968441 (-) True G1632227
TU1867472 lncRNA upstream 230240 47977706 ~ 47980466 (-) False G1632192
XR_002469762.2 mRNA downstream 1994 47706502 ~ 47725019 (-) False LOC110498033
XM_036954953.1 mRNA downstream 279020 47440506 ~ 47447993 (-) True LOC110498031
XR_005037761.1 mRNA downstream 283700 47421716 ~ 47443313 (-) False LOC110498031
XM_021574579.2 mRNA upstream 22421 47769887 ~ 47839786 (-) False LOC110498037
XM_021574581.2 mRNA upstream 22421 47769887 ~ 47839786 (-) False LOC110498037
XM_036954957.1 mRNA upstream 22421 47769887 ~ 47839786 (-) True LOC110498037
XM_021574582.2 mRNA upstream 92419 47839885 ~ 47845749 (-) True LOC110498038
XM_021574596.2 mRNA upstream 364441 48111907 ~ 48147140 (-) False LOC110498045
TU1866265 other downstream 896363 46830334 ~ 46830650 (-) True G1631120
TU1866141 other downstream 1097507 46619207 ~ 46629506 (-) False G1631005
TU1865759 other downstream 1721136 46003765 ~ 46005877 (-) False LOC110498001
TU1861812 other downstream 4317904 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 4888579 42759294 ~ 42838434 (-) True G1626324
TU1867475 other upstream 168829 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 221048 47968514 ~ 47970332 (-) True G1632228
TU1867471 other upstream 230240 47977706 ~ 47980466 (-) False G1632192
TU1867476 other upstream 230240 47977706 ~ 47980466 (-) False G1632192
TU1867574 other upstream 364447 48111913 ~ 48147170 (-) False LOC110498045

Expression Profile