RNA id: XM_036954964.1


Basic Information

Item Value
RNA id XM_036954964.1
length 6144
RNA type mRNA
GC content 0.53
exon number 20
gene id LOC110498039
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47938145 ~ 47981306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTGTGGTTGTGCGCCATATTGGCAATTTCCTCCATCTCACCAAGCCAGAGCATGTATGCATCAAGCCGGTTGTTGAGAACAATATAAACATTTTACAGCGAACCCAAAATACAACAACATGGAGGCAGTCAAAGCATTCAACGACGAGCTCTACTCTCTGAATGAGTACAAGCCTCCGATCTCCAAGGCCAAGATGACCAATATTACCAAGTCTGCAATAAAAGCTATAAAATACTACAAACATGTTGTCCAGAGCGTGGAGAAGTTTGTTCAGAAATGCAAGCCAGAGTACAAGGTCCCAGGCCTGTACGTCATGGACTCCATCGTGCGGCAGTCACGACACCAGTTTGGCCAGGACAAGGATGTGTTCGCCCCGCGCTTCAGCAAAAACATCATCGGAACCTTCCAGCACCTCTACCGCTGCCCCTCAGATGAAAAGAGTAAGATTGTCAGAGTCCTCAACCTGTGGCAGAAGAACGCCGTCTTCAAGAGTGACATCATCCAGCCGCTGCTGGACATGGCTGCAGGACTACCCCCTCCCAGTGTCACCCCTGTCATGACCAGCAGGGATGCTCCGGTCAACAACGCTACGCCTGgTACCCCAGTGACCCCGGCCACTCCAGCCAACATCGTGTCCAGTCTGCCTGACTGGGCGTCTCAGTTTTCCAACACAGACACTGTAGCTGCTGTGGCCCAGATCCTGCAGAGTCCACAGGGACAACAGCTCCAGCAGCTGGTGCAGAGTCTGCAGATGCAGCAGCAGAAGCCCCAGCCGTCTCTGCTGCAGGCGCTGGATGCAGGCCTGGTGGTCCAGCTGCAGGCCCTGACGGCCCAGCTCACTGCTGCCGCCTCAGCCAACCCCATGCACCTCAACCCCCTGGACCAGAGGGTTTCCTCCTTCAACAAGGTGAGGAATCAAGGCCACAGAAATGGAGTGGAAAAAATGTTGGGTCATTTTGACTTTGGGAATGATTCAGAACGCTCTGAAGAATCCAAAAAGGACTCGCAATCATCCCAGATGCCCATGGTGTCTGACTCCATCTTCCACCAGCTGGCAGAGCAGCTGCAGCAGCAGAACCTAGAGCAGTTACAGAAGCAGCTCATggagcaccagcagcaccagcagaaGGATGGAATCTTTGGGTCTGAGAACACACCCCAGCAGAGCAGCAGCCAATCACAGCACCCGGAGCCAGACAACAAGATTGATGACTCCATTGAAAACCAGCAGCAGGACATGGACATGGACCTGGATGACGGGCCAGAGATGGACGAAGAGATCTTCGAGCCAGAGGACAAGAAGTCCAAGACGATTGACATACAGTCAAGAACACGGTCCAGGTCACGATCGAGATCTCCCAGGAAGAGACGGTCCAGATCACGGTCAGGCTCTCGGAAACGGAAACATCGCAAGCGATCGCGGTCACGCTCCAGAGAACGGAAGAGGAAGTTGTCGCGGTCCTACTCCAGCGAGAGACATGCCCGCGAGCTAGAGAAAGAGCGTCAGAAGAAAGGACTGCCTCCAATCCGATCCAAGTTTCTCAGTGTGTGCAGCACCACTCTGTGGGTGGGACAGGTAGACAAGAAGGCCACTCCGCAGGACCTCACCAATCTGTTTGAAGAGTTTGGTCAGATTGAGTCTATCAATATGATCCCTCCCCGTGGCTGTGCCTACATCTGTATGGTCCACAGACAGGATGCCTACCAAGCCAGACAGAAACTCAGCACTGGTTCACACAAGATCGTCTCCAAGGTCATTAAGATCGCTTGGGCGCTGAATAAGGGAGTGAAGCAGGAGTATAAGCAGTTGTGGGACATGGACCTGGGGGTCACCTACATCCCCTGGGAGAAGGTCAAGCTGGACGACCTGGACGGCTTCGCTGAGGGAGGCATGATCGACCAGGAGACTGTCAACGCCGAGTGGGAAGCAGCCAAAAATGCACCAGAGCCAGTGAAGGAAGCGGTGAGCCAGGCTGTTAGCACTGAACCCATGGCAGCCACTAATTCCCAACAGACCCAACAAAAGGCCTTCATCCAACAAGTCTCCATGATGCCTGTGCAGCTCCCTGTGGCCCAGGCTGTCCCTGCTGGGGGTCTTGTGCCTCCATCCTTCCCTGTttccatgacaatgcccccgccAGGCTATGGCCCCCCGCCCACCTTCCTCAGAGCAGGGTTCAACGCCTCCCAGCCTCCTCCAGGTTTCATGCAGGCAGCAGGTGTTCCTCAGCAAGCAGGCATGGGCTCAGCTCCTACATCTCTGGTGCAGCCCTCCATGTCGCAGGCTCAGGACAGCATGAAGGACTCCCCGTACGGAGCCACTGTCCCAGGAAGCTTCATGCCCTCTGCCATCCCTGGACAAGGGGTCTTCAACCCGCTTCAACCTGGAGTCCAGACGCAGCAAGGAGCCAATGACAAGACGGGCCAATCTGCTGATGGCATGGACGCTGCTGCAGAGTTAGTACTGCAAGGTATGCAAAATGCAATGGGTCGTCGTATGGGTCTTCTGGGAATGCACCCCTCAGCCTCCCTCACCCACCCCCTACAACAGCAGGGCCTGCCTGGCCAGAGGATGCCTGGGCTAATGCCGCTGGACCTCCGGCCTAGTATGCTCCAGGGAGCCGGGGCCCGCTTCCCCCTCCTGATGCAGCAGGGCCTGTCCCAACAGAGTATCCTGGATGCCTCCCTCCATGCACAGGCCCGCGCCAGAGCGGCCTCCCAGATGGACCACTTCAACAGGACGGAAGGGGCCTTCAACCGGGGTCCCAACCCCCCAAATGAAAACATGTCTAAGGCTGAAGACCAGCCTTCCTCTCGGGCAGACGAGAGCCAGCAGGGGAGGGACCAAGACTACCGCTTCCCCCCGCCCCAGGAGAAGCAGAGCACAGGCCTGCTGAGGACACCTCCCCTGGAGCACAGAGAGTCCATGGGTGGAGGTGGACGTGGTGGGGGAgctggtggtggggttatgggtggaggaggaggcagacCTGCCCTGCTGCAGACCCCAGTGAGGGAGCCAGCTAGAGACAGCGTGGTAGGGCGGCTTCAGGCCCTCGCCGGCTTCACCCCCCAGACCCAGAGTCGCTGGGGGCCACCTAGAGGGGACTTTGATGAGCGTGACATGCGGGGCTCACCAGCCGGGGTCTCCAAGGGCTTCCAGGAGGAGCGCCCTGGCTTCAACCAGGGGCAGAACTTTCCCAACCGCTTTCAGAACCAGAACCGCGCTGGGGCAGGAGGAGTAGGTGCTGGTGGTCCTGGTGGCGGGGGTGTTGGAGGGGGCCCGGCGTGGAGTCGTGGTGGAGCTGCAGCACCGTTCGCTGATGCTGACATGCCACAGGACTTGGATGAGCGCCGGCGCGCTTGGGACAGGCAGCAACGGGAGAGGGACGACAGGGACTTTGACTTAAGGAAGGAGATGAACGGCAACCGCCGTGAGAGAGATAGCCGCGAGAAAgaccgggagagggagagagagagggaccgggagagagagagggaccatgGTCGTGAGCGTGACAACCGTGAACGAGAGCAGGAGCGTGAccgggagagagagtgtgaaaaggagagggagaaggatcgggagagagagcgtgaaaaggagagggagaaggatcgGGAGAGAGAACGTGAGCGGGACCGTAACAAGCGTGGAGCCTGGACACCTCTTCTCCCTCTACCACAACCCCTACTTCCTACTCctgccctgaccccaaccctCTCCCTGACCCAAGGCAAATCTCAGGCCCTGCTGCAACTACAGTCCAGGCTTCAACCTAAACCTGGATTCCTAACTAAACCGGGTCTGCTTCAAACTCCAACCCTCCTAACTCGGTCAACATTTCAAGCCCCAACCAAGTTCATTCAAGCCCCATCCCATTCTCCAACTCAAGCCAAGAATGAAGCCCTCCCCGGGCCTGAGCCCCAGACAGAGTCCCAGTCCTCTACCCAGACCCATGCTTCCCCTAAGTCTGAGTCCTCATCCCAGAACCAACCCTCTCCTCAGAACCAGTCATCACCCCAAAACCTGGTTTCCTCTCAGGCCCAATTGCCGTCCCCTCCCCAGGCCCAGTCCCCGCCATGGGCACAGCCCCTGTCCCCACCACCGGCACAGTCGCCTCCCCAGGCCCTGTCCCCACCACCTGCACAGTCGCCCCCCCAGGCCCTGTCCCCACCACCTGCACAGTCGCCCCCCCAGGCCCTGTCCCCACCACCTGCACAGTCGCCCCCCCAGGCCCTGTCCCCACCACCGGCACAGTCGCCACCCCAGGCCCCGTCGCCACACCAGGAGATCACTGACACCCAGGAAGAGCCAGAAAAACTCCAGGAAGAACCCATGGAAGAGCCTGAACCAATAGAGGAACCTCCATCTCAGTTGGTCTATGGGACGGGGTTGAGGATGGACACTGACATAGTGGCTAAGCCCACACCTGAACGGGCTCCCACCCctaccctctcccccactccagcCCCACTCTCAATGTCACCGGTCCTCACACATCGCTCTGAGGAACCCCAATGCCTGCCAGAACCCCTGGACGTGCAGCAACCACCACAGCATGCCTCCTCCTCCCCTAAGGACAATGGACTGAGTGAGCCGATGGAGGAAGCTGAGAAACAGCCAGTGGTAGAGCAAACTGACACTGAGGGGACATAATCATCACTCAGTAGGTAAAGATCATTTTGTAAAGTTGTCTCTTCTCTGTACTCATGTCAGCCACCCACGGGACCCTGGGTAGTAATTTGCATAATATTGTCTGATGACCTAACAACCAATTTTATTTCTCACATAACGGTGTACTTCAATAGATGGCTCGCTAGCTGATTAAATGGTAGGTGATTATGTTTTTCaatattttatttctttcttttttttaagttGTAATGCCACCCCACGATTTAAAGCTTGGTGAATTTGAATGAAaattgcttgccaaaatgttTGAATTGTAAATGAGAAAGAGCTTTGACCTTCCTATGGAAGAGTGTACGGATCCTGGCTGTTTCCACTGAATTGAATCCAGATGAGGGAATACTTGAAAACTGCAGTCACTGGCCTGTTTTTTTCTCTTCTTTTAAAATATGCTGCAGCAAAGTTTTAAATGAATGCCTTTGTGGTGTCCTATATATATGCTTCTGGTCTATAAGcagaatatagcctacatacagtaagaACCGTACAGTTGCTTCTAAAAAGGAACATCCTAAAAGATTAAAAACATGACCTGTGTTATCCCCAAAAGAAATGTCTGTGATTTGTTCATCATAATGCAGTGATTCAGAGGACAAAGTAAGCcagagagataaaaaaaaatatatatatataaatatatatatatatgttttttttttttaaaggatggTGGATGTTGGGTGCATTCTGTTTTAGTTTGAAATAAACATGCTTTGTTTGTTAACAAATGCTTTAGGACTGTATTTTCTGACCCAGGACCAGTGGAATAATGTTTTACACACAGACTATATGCTTTTTGTGGTGGTGTCACATACAAACAGCTGTGTCACTCAGTAGTTAGACCATTGACTTGATGTTGTCGTACCCCATTAAGTCAGGCAGGATGTAAAAGTGCCTGTACTTTGACATCAATCTATTCTATCTAAACCGCTCTTAAATGTGTTGTTTGCGACCATGGGATTAATTTGTTATGTTAGCTTCTGCGCACTCTGTACTTCCCTATACTTCTGTTTGGTCAGTGACTTTGGGATCGGATTGTGCCTTCTTGATTTGATTATTGTTCAGCATAATGTCACCAAATACACCACACTATGCTCAATGTGCTGCTTTGGTTTCCCTGAGGCTGTACAACCCCTCAGAGACAGCAGTCTGTCCAGCAAGCTGACAACACAGACAATGATCTCCTTTGTCTGTGTGATCATAGCTGAGCAGCCTATACACCATTTAGCCTATGTATACGGGGAACCAACCAGTCTGTTTACTCCATCGTTGTGTGCATGCCGGCCTGTAGCCATTTAttctcctttgtcttgttcactTCATACTTCTTCAGTGCATTTCTGTTGAGACACTATACTACCAGGACAGGTTCAATAGTCTGAAGTTCTCTCAGAGAAGCAAATGTTATAAGAGTTGTGAAGTTGAATAAAGTTGAAGGTAAATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867147 lncRNA upstream 92413 47845061 ~ 47845732 (+) True G1631918
TU1867085 lncRNA upstream 165174 47772701 ~ 47772971 (+) True G1631857
TU1867066 lncRNA upstream 166277 47771439 ~ 47771868 (+) True G1631840
TU1867069 lncRNA upstream 187574 47749884 ~ 47750571 (+) True G1631843
TU1867064 lncRNA upstream 193354 47744562 ~ 47744791 (+) True G1631838
TU1867221 lncRNA downstream 24419 48005725 ~ 48006042 (+) True G1631988
TU1867242 lncRNA downstream 63197 48044503 ~ 48044810 (+) True G1632009
TU1867300 lncRNA downstream 117549 48098855 ~ 48171084 (+) True G1632035
TU1867277 lncRNA downstream 142600 48123906 ~ 48129380 (+) False LOC110498044
TU1867260 lncRNA downstream 142642 48123948 ~ 48129380 (+) False LOC110498044
XM_036954967.1 mRNA upstream 194 47861863 ~ 47937951 (+) False LOC110498042
XM_036954969.1 mRNA upstream 194 47924728 ~ 47937951 (+) False LOC110498042
XM_036954970.1 mRNA upstream 194 47925377 ~ 47937951 (+) True LOC110498042
XM_036954968.1 mRNA upstream 19680 47861865 ~ 47918465 (+) False LOC110498042
XM_036953826.1 mRNA upstream 172644 47764384 ~ 47765501 (+) True LOC118941362
XM_036954960.1 mRNA downstream 26788 48008094 ~ 48111647 (+) False LOC110498040
XM_036954962.1 mRNA downstream 26788 48008094 ~ 48111647 (+) False LOC110498040
XM_036954958.1 mRNA downstream 26789 48008095 ~ 48111647 (+) False LOC110498040
XM_036954959.1 mRNA downstream 54180 48035486 ~ 48111647 (+) False LOC110498040
XM_036954963.1 mRNA downstream 110082 48091388 ~ 48111647 (+) True LOC110498040
TU1867071 other upstream 189063 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 276910 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 1678497 46257919 ~ 46259648 (+) False LOC110498004
TU1864938 other upstream 1712325 46225382 ~ 46225820 (+) True G1629912
TU1864795 other upstream 1921506 46013724 ~ 46016639 (+) True G1629779
TU1867254 other downstream 142642 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other downstream 142642 48123948 ~ 48129380 (+) False LOC110498044
TU1867715 other downstream 597472 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 608319 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 717751 48699057 ~ 48700568 (+) True G1632650

Expression Profile