RNA id: XM_036954959.1


Basic Information

Item Value
RNA id XM_036954959.1
length 7257
RNA type mRNA
GC content 0.55
exon number 27
gene id LOC110498040
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48008094 ~ 48111647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgactgtgtcacTTTAAGACCGGCAGGCTGACTTGGTTGAATCCACTTTAAGATCAGAGAGCTCTAGATTCTCCTTGCTTGCTCTTCAAAGAGCTTTTAGATGAAAGCTTTGGACGGAGATGGTCCTGGCTGTtcagcaggaggagagagggtcgCCTGAGAGCAGAGGAATCCAGGACCACCATGCCCACTGAAGGAACTCTGAGACGAGACTGAGACTTTAGAACACACAGATCGCAATGGGAAACTCTGAGAGCCAGTACAGCATTCAGGGGTCCAAGGGCACCAGCTTAATCTTCCCAGGGAAACAAAAGCCCTACTCACTAAAGTTCCGCTCAAACAAAGAAGAGGTTCTATCCCCCCATACATGGTGGAAAGGTGGGCCGGGGGGCTCTGGGTACAAGGCTAGGGCTGTTGGTCGAGGCTGCCTCTCCCccctgcagaggagaggagagccgtACATCTCCAGACACTATGATTACGTCACCAAGGGGGTGAAGGGCAGTCCAAACTGCCATCTCTGGCATGGCTCCCCACCAAGAGGCCGCTCACACCTCCCAGCTGAGAATAGATGCTGCCCATATGAGGGCAGGGGAAGCCTGTACAGTAGAGCATCAGGGGATCTGAACGACTATGCTCTGAACGGACACAGGACCCCAGAGAGGATgcgaggagagggagatgaggggctTGAGGAGCAGAGCAGTCCCAGGGTGGTCATCAAGAAGGATGGTAGTCTGAGGGTGGAGTTCACCAACACTAACAGTGGTCTGCTGCTAGATGAGGCATCTGGGCCAGTGCAGCTGCTCAAGTTCTCCCCCACCCTGGAGTCCACCTCTAGTCTGCCTGGCAGCAGCAGGCCTGAGGCCCACCATGGTGCTCCGCAGCCAGCCTCAACCTCCACCGCCAGGACTAGCAAGGGCAGCTCGCTGAGCTCAGAGGGCTCTTGGTACGACTCGCCCTGGGGGCCCAGCGTGGAGCTCTGCGACCAGGACCAGTCCTGTTCCTCCAATAGGTCTATGGGAAACCGTAGGTCTGACCAGTTGGATTCCTTTGGCCAGCAGTCTCCTCCTGTGTCCATCTCAGATCTCTACAGGGACCCCAGTATGGCTGCCACCTTCCCCACAGCTAAGGACCTGTCGGCCCAGTACAGGGAATCCCCTCTTCACTCCCATCACATCCAGCACCAGGCCTCCTTTGTTTCGGCCCTGGACATGCCTGCTGAGGAGCAGTGTCCAGAGGCCCTGCAGTACTCATCCTACACCCTGCCCTGCCGTAAGGCCCAGCCTAATGGAGAGGTTTCCACCCTGAAGAAGGGCACTGGCTCCGTCAGGAGCCGCATGAGACGCCTCAGCGACTGGACTGGAAGTCTCagcaggaagaagaggaagacacAGGAGCCTAGGTATAAGGACAGCAGAGAGGCCTTTGACAGTGGAGTGGACGGTCTGACAGCTGCCACCAGCTCTCCCTCCCAGGTATCCAGCCTGTGGTACCCTGGCGGACCTGGCAATGTTGGGGCCTCCCGGGCCCAGTCTGCAGGGGCCCTCCACCACAGCAGCGACGCCCTCCACCAGAACATCTATGAGAACTTCATGCAGGAGCTGGAGACAGGGATGGGGCAGGGCAGTAgtggaggagcagggggaggaggtgagaggagagacccGTCTACGGGGACAGAAGGGGGGGAGAGCAGCAGTGAGTCTGCAGGCGGCTCTCTGGAGCAGCTGGACATGCTCTTTGAAAAGGAGCAGGGGGTGGTACGCAGGGCTGGCTGGCTCTCCTTCAAACCCCTCCTCACCCTGCACAAGGACAGGAAGCTGGAGCTGGTCACACGCAGGAAGTGGAAACAGTATTGGGTCACCCTGAAAGGTTGTACCTTGTTGTTCTATGAGACCTATGGTAAGGGTTCTCCAGAGCAGGAGCTGTCTCCACGCTACGCCCTGTTTGCAGAGGACTGTATCGTCCAGGCCATTCCTGAGCACCCCAAGAAGGAGAACGTCTTCTGTCTCAGCAACACCTACGGAGATGTCTACCTCTTCCAGGCTAGCAACCAGACAGACCTGGAGAACTGGGTGACAGCCATCCACTCTGCCAGTGCCTCTCTGTTCGCTAAGCGCCATGGGAAGGAGGACACGGTGCGTCTGCTGAGGAGCCAGATCAGAGGCCTGCTGCAGAAGGTAGACATGGACGGTAAGATGAAGAAGATGGCTGAACTGCAGCTGTCCATCGTCAGTGATCCCAAGAACAGGAAGGCCATCGAGAACCAGATCCAGCAGTGGGAGCAGAACCTGGAGAagtttaacatggacctgttcaGGATGCGCTGTTACCTGGCCAGCCTGCAGGGCGGCGAGCTGCCTAACCCCAAGAGCCTGTTGGCTGCAGCCAGCCGGCCCTCCAAGACTGCCCTGGGACGCCTGAGCATCTTCTCAGTGTCCTCCTTCCATGCACTGGTCTGTTCCAGGGATGAGGCCACTCTGAGGAGGCACTCTGTGTCCCTGAGCCAGAGATCATGCAACAAGAAaggcctcttctcctccctcaaaGGCCTGGACAATCTCACTAAGAGGGACCGCGACAAGAGACCGTCCGCAGGACAGATCTTTGAAAGTGATGGAGGACAACCCTACTGTCTCCCACCCACTAGTTCTGAGaGACTGGACAGCCTGGCCAACCACTACTCTCTGGCTCCCCCTGAGGGCGGTCAATGGGAGAGCAGTGGTGAAACACTGGGCTGTGTTTACATGCCTGACAGCCACGCCGTCCAAGTGCCTATGAGACGGGACCATACAGTGGCTGATGTCGTCTCCCTAGCCTGCAAGTTGACGCAGCTGAACCCTAACCTGCACTGTCTCAGACTGCACAGATGTGTGGCCCAGAACGTAGAGGTCCGCACCCCAGCACCCAGCGAACTCCTACATGACCTGTTGTATGACGAGCTAGAGGTGTTTCCAATgaatgtattcaccctgcacatgACGAGACCTGCCTGCACTGGAGACTTTGGCTTTGCAGTCACAGGGCACATAGATGGACAGAGGAACAGCCGCATCTTTGTCAGTGAGGTTTTGCCTGATGGACTGGCCTTCAGTGAAGGCCTGAGACCAGGTAATGAGATTGTGGTTCTGAACGGTCGAGGCGTGTCCACTTTGGACCTGGGTCTGATCCAGAAGCTGTTCGCTGAGCAGACCCTCCAGCTGACCCTCAGACGGGACGCACCGCCCACctcacccctgacctctgacccctcgaCTCCGACCCCACTGTCCAACCAATCACAGCTGCTGCAAGACTTCCTGGACACACACCACCATGCCAAGTCCACTACAGATGTGTCCTTGGTGCCAGAGGTCCTTGGTGAGTCCTTAAGCTCTGGGCTGGAGAATGGTCTACAGCACTCCCACAGCAGCCACAGGGCCGTACAACCCAGCAAGAGCGTGGAGACGGTGTGCATGCTGTACCACACCTTCCAAGAGGGCTCCGGGGGCTTGATGGAGGGCCGCAAAGACCCCCCGGCTCCAGGGGCCGAGCCCACACTGCACAGACCTTGTCCCCGACACATGAGTGCCACCGAGAGGCTCCGCAAGGTCATCCAGGAGCTGGTGGACACAGAGAAGTCCTATGTCAAGGACCTGAGTTGCCTGTTTGAGATCTACCTGAAGCCACTGCAGAACGAGACCTTCCTTACGCTggatgagATGGATAGTCTGTTTGGCAGCCTGCCAGAAATGCTGGACTTCCAGAGGGTGTTCCTGCAGACGCTGGAGGAGAGGATTGCCTCTTCACCTGACTTCAGCACACTGGAAACCCCTGTGCAGTTTAAGAAGCTTCTCTTCTCTCTGGGTGGATCCTTCCTGTACTACGCTGATCACTTCAAGCTCTACAGTGGCTTCTGTGCCAACCACATCAAGGTCCAGAAAGTCCTGGAGAGAGCTAAGACTGATTGGTCCTTTAAGGAGTTCCTGGCTGCGAGGAACCCTACGAAGCAGCACTCCTCAACCCTGGAGTCCTACCTGATCAAGCCAGTCCAGAGAGTGTTGAAATACCCTCTACTGCTTCGAGAGCTGGTTTCTCTCACTGACACAGACAGCGAGGAGCACTACCACCTCACAGAGGCCCTCAAGGCCATGGAGAAGGTGGCCAGCCACATCAATGAGATGCAGAAGATCTATGAGGACTATGGTTCTGTGTTTGACCAGCTGGTGGCAGAGCAGAGTGGCCATGAGGAGgTCACAGAGCTTACCATGGGAGAATTCCTCATGCATTCCTCTGTCGTCTGGCTCAACCCCCATCCCTCTCTGGGCCGCATGAGAAAGGACCCCGAGATGACCGTGTTTGTGTTCAAGAAGGCAGTGATACTTGTCTACAGGGAGAGCAACAAGCTCAAGAAGAAGATGACCACCCCTCGCTTGGCGCACTCCCATGGAGACCTAGACCCCTTCAAGTTCCGCTGGCTCATCCCGCTCTCTGCACTGCAGGTCCGACTAGGCAACACTGCAGGTACTGAGACGACCTGCATCTGGGAGCTGATACATACCAAGTCTGAACTGGAGGGAAGGCCAGAGACGGTCTTCCAGCTGTGTAGCAGTGTCCCAGAATGCAAAGTGAACATCATCAAGGTAATCCGCTCCATCCTCCGGGAGAACGTCAGACGGAACATGCTCTCGGCCGAGATGGGGTGTAAGGAGCACCTCACGCCTTTACGCAGCACCCTGCCCTCCTCTGCCAGGATAGGTCCATCCAGAGCCTCCTGGCTGTGTAAGCAGCCCCTGCTGGATCTCCCCACCCCAGCCAGCACACTCAAACCTGGCCAGCCTGACTCAGACGAGGGCAGTCTGAGCAGTGGCACCCACAGCTCCTCTGACGCTCCCCCAGCTGACGGTCCCACACAGCACAAAACACTGTCTACCCAAAAGGCCTGGTCTCGGGGCGGCCAGCGGCCCTCTAGCTTCAGCTCTGTGAAGGAGTCATACATCCTGAGTGATGAGGACGATGAGTTCAGTGAGGCTAGAGAGAGTTTCCCCTCCTGTGCCATTGAGGCCCAGTTTCTCAGTTTGAGGCTGTCAGAGGAGGCCGCTTCCTCCCGGGCGCCGGCCCCCCGCGTGCAGccagagggagcagaggtgaACACCCCGGAGAGCCAGCCCAAGCTTGTTCGGGGCCACTTCTGCCCAGTGAAGAGGAAAGGTAGCAGCCAGCGGGCGCTACTGAGCCTACACAGCCGTTCCCTGGACAGCCAGACAGACCTGGCAGCCATAGACCTCAGCACTCTGCTGGAGAGAGAGTTCAGCGTACAGAGCCTCACCTCCGTGGTCAACGAGGACTGTTTCTACGACCCTACGGACACTGGCAGTGCCCCTAACAACTCATAGGGTCAGGAATAGACACAAGGAGAGGGGCCAAAGCTCTGCCCAGCGCCCGCTCCATGCCTGTCCTAGTGCCAGGATATCTGTTGTGCCTCAGCCCTGAAGTTAAAACTGTGTTCCTTTGAGAGCGTACAATAGGCACAGGTGCTCAGCGACATAGTTGTCCCCCTAGAGAGACGAGGTGACTCAGTCCCTGTACAACTACCCTCCGCCTCCATCCAGCTCTTCTGTATATGCCTCTGCTCAGCTCCCCTTCTCTGCTCCCCTTCTCAATAATATGAATTGGCTTCCTAGGTGAGAGTAATGTAGCGAATAGACTTTGTTCACCTTTCAGTTCATTCATGTCAGAGAGAAGGACGGCGATGAGAGGATTccactttagactattgagactcaccctAAGAGCTTCACTTTCTAAAGCTCTATAAGTCAGAGTACATCTAAATCCACAGGAGAGGATTccactttagactattgagactcaccctAAGAGCTTCACTTTCTAAAGCTCTAGAAGTCTGAGAACATCTAAATCCACAGGAGAGGATGGACATTGATGACTTGCTGTACATTGTTTGcctatttaattaggcaagtcagttaataacaaattcttattttcaataatggcccaggaacagtgggttaactgccttgttcaggggcagaacgacagatttttaccttgtcaactcggggattcgatcttgcaacctttcggttactagtccaatgctctgaccactaggctacctgccgcccctgtatTTGTACATCAAGTGGATTTTTGTTTTTAAAGCAATGTTAATTTATTGATAGTTGTAACTTTTTATTGCTTTGCAAAATACATATGGGGTTGGCTTGAATTGAAGAATCTGGTATGTTTCACCTAATGAATGTTTTCCAGTGTATTGAATAAGAGTATGGTTGTCATCCTCCCCCAGAAGTGTCGCTTACAATGTACACAGGCATTGTCAAAGGATTTAATTCAAATGTGTTGTCAACTTGCCCTGTTTGTAGATCCCATACCTGAGTAGCTGGACTATAACTTCATTTGAATCTTTGATATTAATACACATACCGACATTGTACAGGTAGAAACGGCTGTAACTTGCAATAAATACACTCTGGTCCCAGTGTTTCTGGGATATTTTGCTGTTGAGACATCCTATTATCTGACACCACCACGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAATGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACACGTACCCTCCCTCTCGGTTTGCCCTCAACTCAACTGTAAACATGCCTTTAATGCTAGCATACCAATGAATGTGAACCATAATGAACTGTTTtataaataaacatttttatCTGTGAGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867221 lncRNA upstream 29444 48005725 ~ 48006042 (+) True G1631988
TU1867205 lncRNA upstream 76202 47956780 ~ 47959284 (+) True G1631975
TU1867147 lncRNA upstream 189754 47845061 ~ 47845732 (+) True G1631918
TU1867085 lncRNA upstream 262515 47772701 ~ 47772971 (+) True G1631857
TU1867066 lncRNA upstream 263618 47771439 ~ 47771868 (+) True G1631840
TU1867277 lncRNA downstream 12259 48123906 ~ 48129380 (+) False LOC110498044
TU1867260 lncRNA downstream 12301 48123948 ~ 48129380 (+) False LOC110498044
TU1867257 lncRNA downstream 13671 48125318 ~ 48129380 (+) False LOC110498044
TU1867269 lncRNA downstream 13671 48125318 ~ 48129380 (+) False LOC110498044
TU1867273 lncRNA downstream 13671 48125318 ~ 48129380 (+) True LOC110498044
XM_021574584.2 mRNA upstream 54180 47938145 ~ 47981306 (+) False LOC110498039
XM_036954964.1 mRNA upstream 54180 47938145 ~ 47981306 (+) False LOC110498039
XM_036954966.1 mRNA upstream 54180 47938238 ~ 47981306 (+) False LOC110498039
XM_036954965.1 mRNA upstream 54180 47938249 ~ 47981306 (+) True LOC110498039
XM_036954970.1 mRNA upstream 97535 47925377 ~ 47937951 (+) True LOC110498042
XM_036954971.1 mRNA downstream 10578 48122225 ~ 48126618 (+) False LOC110498044
XR_002469764.2 mRNA downstream 12360 48124007 ~ 48129380 (+) False LOC110498044
XM_036954973.1 mRNA downstream 49106 48160753 ~ 48166744 (+) True LOC118941486
XM_036954974.1 mRNA downstream 139465 48251112 ~ 48582548 (+) False LOC110498372
XR_002469766.2 mRNA downstream 449919 48561566 ~ 48564328 (+) True LOC110498048
TU1867071 other upstream 286404 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 374251 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 1775838 46257919 ~ 46259648 (+) False LOC110498004
TU1864938 other upstream 1809666 46225382 ~ 46225820 (+) True G1629912
TU1864795 other upstream 2018847 46013724 ~ 46016639 (+) True G1629779
TU1867254 other downstream 12301 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other downstream 12301 48123948 ~ 48129380 (+) False LOC110498044
TU1867715 other downstream 467131 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 477978 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 587410 48699057 ~ 48700568 (+) True G1632650

Expression Profile