RNA id: XM_036954963.1


Basic Information

Item Value
RNA id XM_036954963.1
length 4155
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110498040
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48008094 ~ 48111647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAtgggatggtagagagagagagcgtgagggagGAATGCCCCTCCGTTTGCACTGTCCGCTCGGTCCGGCCGTCCACCCCGATTGATATGCAGATTGGTGCAGGCAGCAGTTCTTTGTCAAATGCCTACACTCTCAGAACCTCTAGGTTCAGGATTAATAGCTAGATCCCATCAAGTACAGTCCAGTCAGCACCAACCACGTGTGGTTTATCGGTCAGACACAGTCCAGCCGTGATGCCAGCATCCAGGCCAGGCAGGCTGCATAGGAAGGGCTGTAACCTGGCCCGTAGGACCCAGAGACAGGCCACAGCAGCCTGGAGGCTCCTCTACAGCCTGCTCTTCATGAGCGTGGAGACGGTGTGCATGCTGTACCACACCTTCCAAGAGGGCTCCGGGGGCTTGATGGAGGGCCGCAAAGACCCCCCGGCTCCAGGGGCCGAGCCCACACTGCACAGACCTTGTCCCCGACACATGAGTGCCACCGAGAGGCTCCGCAAGGTCATCCAGGAGCTGGTGGACACAGAGAAGTCCTATGTCAAGGACCTGAGTTGCCTGTTTGAGATCTACCTGAAGCCACTGCAGAACGAGACCTTCCTTACGCTggatgagATGGATAGTCTGTTTGGCAGCCTGCCAGAAATGCTGGACTTCCAGAGGGTGTTCCTGCAGACGCTGGAGGAGAGGATTGCCTCTTCACCTGACTTCAGCACACTGGAAACCCCTGTGCAGTTTAAGAAGCTTCTCTTCTCTCTGGGTGGATCCTTCCTGTACTACGCTGATCACTTCAAGCTCTACAGTGGCTTCTGTGCCAACCACATCAAGGTCCAGAAAGTCCTGGAGAGAGCTAAGACTGATTGGTCCTTTAAGGAGTTCCTGGCTGCGAGGAACCCTACGAAGCAGCACTCCTCAACCCTGGAGTCCTACCTGATCAAGCCAGTCCAGAGAGTGTTGAAATACCCTCTACTGCTTCGAGAGCTGGTTTCTCTCACTGACACAGACAGCGAGGAGCACTACCACCTCACAGAGGCCCTCAAGGCCATGGAGAAGGTGGCCAGCCACATCAATGAGATGCAGAAGATCTATGAGGACTATGGTTCTGTGTTTGACCAGCTGGTGGCAGAGCAGAGTGGCCATGAGGAGgTCACAGAGCTTACCATGGGAGAATTCCTCATGCATTCCTCTGTCGTCTGGCTCAACCCCCATCCCTCTCTGGGCCGCATGAGAAAGGACCCCGAGATGACCGTGTTTGTGTTCAAGAAGGCAGTGATACTTGTCTACAGGGAGAGCAACAAGCTCAAGAAGAAGATGACCACCCCTCGCTTGGCGCACTCCCATGGAGACCTAGACCCCTTCAAGTTCCGCTGGCTCATCCCGCTCTCTGCACTGCAGGTCCGACTAGGCAACACTGCAGGTACTGAGACGACCTGCATCTGGGAGCTGATACATACCAAGTCTGAACTGGAGGGAAGGCCAGAGACGGTCTTCCAGCTGTGTAGCAGTGTCCCAGAATGCAAAGTGAACATCATCAAGGTAATCCGCTCCATCCTCCGGGAGAACGTCAGACGGAACATGCTCTCGGCCGAGATGGGGTGTAAGGAGCACCTCACGCCTTTACGCAGCACCCTGCCCTCCTCTGCCAGGATAGGTCCATCCAGAGCCTCCTGGCTGTGTAAGCAGCCCCTGCTGGATCTCCCCACCCCAGCCAGCACACTCAAACCTGGCCAGCCTGACTCAGACGAGGGCAGTCTGAGCAGTGGCACCCACAGCTCCTCTGACGCTCCCCCAGCTGACGGTCCCACACAGCACAAAACACTGTCTACCCAAAAGGCCTGGTCTCGGGGCGGCCAGCGGCCCTCTAGCTTCAGCTCTGTGAAGGAGTCATACATCCTGAGTGATGAGGACGATGAGTTCAGTGAGGCTAGAGAGAGTTTCCCCTCCTGTGCCATTGAGGCCCAGTTTCTCAGTTTGAGGCTGTCAGAGGAGGCCGCTTCCTCCCGGGCGCCGGCCCCCCGCGTGCAGccagagggagcagaggtgaACACCCCGGAGAGCCAGCCCAAGCTTGTTCGGGGCCACTTCTGCCCAGTGAAGAGGAAAGGTAGCAGCCAGCGGGCGCTACTGAGCCTACACAGCCGTTCCCTGGACAGCCAGACAGACCTGGCAGCCATAGACCTCAGCACTCTGCTGGAGAGAGAGTTCAGCGTACAGAGCCTCACCTCCGTGGTCAACGAGGACTGTTTCTACGACCCTACGGACACTGGCAGTGCCCCTAACAACTCATAGGGTCAGGAATAGACACAAGGAGAGGGGCCAAAGCTCTGCCCAGCGCCCGCTCCATGCCTGTCCTAGTGCCAGGATATCTGTTGTGCCTCAGCCCTGAAGTTAAAACTGTGTTCCTTTGAGAGCGTACAATAGGCACAGGTGCTCAGCGACATAGTTGTCCCCCTAGAGAGACGAGGTGACTCAGTCCCTGTACAACTACCCTCCGCCTCCATCCAGCTCTTCTGTATATGCCTCTGCTCAGCTCCCCTTCTCTGCTCCCCTTCTCAATAATATGAATTGGCTTCCTAGGTGAGAGTAATGTAGCGAATAGACTTTGTTCACCTTTCAGTTCATTCATGTCAGAGAGAAGGACGGCGATGAGAGGATTccactttagactattgagactcaccctAAGAGCTTCACTTTCTAAAGCTCTATAAGTCAGAGTACATCTAAATCCACAGGAGAGGATTccactttagactattgagactcaccctAAGAGCTTCACTTTCTAAAGCTCTAGAAGTCTGAGAACATCTAAATCCACAGGAGAGGATGGACATTGATGACTTGCTGTACATTGTTTGcctatttaattaggcaagtcagttaataacaaattcttattttcaataatggcccaggaacagtgggttaactgccttgttcaggggcagaacgacagatttttaccttgtcaactcggggattcgatcttgcaacctttcggttactagtccaatgctctgaccactaggctacctgccgcccctgtatTTGTACATCAAGTGGATTTTTGTTTTTAAAGCAATGTTAATTTATTGATAGTTGTAACTTTTTATTGCTTTGCAAAATACATATGGGGTTGGCTTGAATTGAAGAATCTGGTATGTTTCACCTAATGAATGTTTTCCAGTGTATTGAATAAGAGTATGGTTGTCATCCTCCCCCAGAAGTGTCGCTTACAATGTACACAGGCATTGTCAAAGGATTTAATTCAAATGTGTTGTCAACTTGCCCTGTTTGTAGATCCCATACCTGAGTAGCTGGACTATAACTTCATTTGAATCTTTGATATTAATACACATACCGACATTGTACAGGTAGAAACGGCTGTAACTTGCAATAAATACACTCTGGTCCCAGTGTTTCTGGGATATTTTGCTGTTGAGACATCCTATTATCTGACACCACCACGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAATGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACGCGTACCCTCCCTCTCGGTTTGCCCTCAACACGTACCCTCCCTCTCGGTTTGCCCTCAACTCAACTGTAAACATGCCTTTAATGCTAGCATACCAATGAATGTGAACCATAATGAACTGTTTtataaataaacatttttatCTGTGAGAGCA

Function

GO: NA

KEGG:

id description
K05731 TIAM1; T-lymphoma invasion and metastasis-inducing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867242 lncRNA upstream 46578 48044503 ~ 48044810 (+) True G1632009
TU1867221 lncRNA upstream 85346 48005725 ~ 48006042 (+) True G1631988
TU1867205 lncRNA upstream 132104 47956780 ~ 47959284 (+) True G1631975
TU1867147 lncRNA upstream 245656 47845061 ~ 47845732 (+) True G1631918
TU1867085 lncRNA upstream 318417 47772701 ~ 47772971 (+) True G1631857
TU1867277 lncRNA downstream 12259 48123906 ~ 48129380 (+) False LOC110498044
TU1867260 lncRNA downstream 12301 48123948 ~ 48129380 (+) False LOC110498044
TU1867257 lncRNA downstream 13671 48125318 ~ 48129380 (+) False LOC110498044
TU1867269 lncRNA downstream 13671 48125318 ~ 48129380 (+) False LOC110498044
TU1867273 lncRNA downstream 13671 48125318 ~ 48129380 (+) True LOC110498044
XM_021574584.2 mRNA upstream 110082 47938145 ~ 47981306 (+) False LOC110498039
XM_036954964.1 mRNA upstream 110082 47938145 ~ 47981306 (+) False LOC110498039
XM_036954966.1 mRNA upstream 110082 47938238 ~ 47981306 (+) False LOC110498039
XM_036954965.1 mRNA upstream 110082 47938249 ~ 47981306 (+) True LOC110498039
XM_036954970.1 mRNA upstream 153437 47925377 ~ 47937951 (+) True LOC110498042
XM_036954971.1 mRNA downstream 10578 48122225 ~ 48126618 (+) False LOC110498044
XR_002469764.2 mRNA downstream 12360 48124007 ~ 48129380 (+) False LOC110498044
XM_036954973.1 mRNA downstream 49106 48160753 ~ 48166744 (+) True LOC118941486
XM_036954974.1 mRNA downstream 139465 48251112 ~ 48582548 (+) False LOC110498372
XR_002469766.2 mRNA downstream 449919 48561566 ~ 48564328 (+) True LOC110498048
TU1867071 other upstream 342306 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 430153 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 1831740 46257919 ~ 46259648 (+) False LOC110498004
TU1864938 other upstream 1865568 46225382 ~ 46225820 (+) True G1629912
TU1864795 other upstream 2074749 46013724 ~ 46016639 (+) True G1629779
TU1867254 other downstream 12301 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other downstream 12301 48123948 ~ 48129380 (+) False LOC110498044
TU1867715 other downstream 467131 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 477978 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 587410 48699057 ~ 48700568 (+) True G1632650

Expression Profile