RNA id: TU1867273


Basic Information

Item Value
RNA id TU1867273
length 3885
lncRNA type read_through
GC content 0.47
exon number 3
gene id LOC110498044
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48122225 ~ 48129380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTCATCGCCGCCGGCTTCCTGTGCCTGGTGCCCGCTTCCTGGTTCACCAACGAGGTCATCACTAACTTCCTGGACCGCAGTGTGCACGAGAGCAATAAGTTTGAGCCCGGGGGGGCCGTGTACGTGGCCTTCCTGTCGGCAGGCTTCCTCTTCGTGGGGGGGTCCATCTTCTGCGTGTCTTGCTCGGGGAAGAGGCCCGGTCACCAGGACATGATCTTACTGCCCCCCCCCAACAAACTCATactgcagcagcaacagcagctcCTACAGCAACAGCAGCAGGACCAGCACCAGTACTGCTCCCTCTCCCCACTAGACAATAAGACAGGCTACAGCCTGCAGGACTATGTGTAGGCTAAAGCAACAAGCCACTTGCTACTGCTAGGCACACCAGTTAGAGGAACAACCAGGGCTTACACTGCGTAAGAGATTGAGGAGGAGACTAGAGCAGAGGGGAAGGACTTTGATGgcgtctctctttcccctctttttctgTTCTGCAAGCACAAGCAGTGGAGGTATTCCCCGAGCAGCCCCTTGGAACAGACGGACGGATGGTGAATGTGAAATGCAGCGCAGCCGggggaggaagggaagcgctGCAGAATGGGAGGGGAGCCGCAGCGACACATGCAGATACCCCAGCAATCATCAGTAAATCCATTAAGACTTCCCGGGGGAATGGATTAGCTGATAACAAGCCTCCCGTTAATTTCCTTTTCCTCGCCAAAGGTTTGAATTAATAAGCAATCATTTAGCTGCTAATAATCGTTTGGTAACCACCCATTCGGCAAGTCGGCAATATTGCTATTATTGTCTCAGAGGCAATAACAGTACGTGCAATTCCCTTTCCATAAGCAAGCTACTGTTGTTTTGAACTATCCACTAGATATGCTAGTTGTTGGGACTGATTTAAGTCAGTCTTATTTTTGGTAGCTAATAGACTGATATTTTGCCTAAGCATGCTGTTTGGAGCCTGTCTGTGTATATTGCAGAGGAATGCCTGTTAGAGACAGACGTATGTAGTGTAGCCAACGCAATGCCTAAAAAGCTGTAGTATGTTATCCTTCCCATTGAAACTGTTCAAAGAGTGCTGTCAGAATTAATACAAAGGGTGCTGGGCTTGGAGATCGAACAGAATGGCATATAAACAAAATCCTGTAACTCACCCtgcaggtagagacagacagagagagaaagagacagacagagagggagggacaaacagtgagacacagacagaaagagagacaaaccgcgagagagagggacaaacagtgagacacagacagaaagagagacaaaccgcgagagagagggacaaacagtgagagagacacacagacagaaagagacaaaccgagagagagacaaagacagacagagagggagggacaaacagtgagacacagacagagagacaaaccgcgagagagagacagagacacacagagacagtcccACCTTCAGCAGAGTGGACTGTATGACATACTTTACTATTAAGCTCCAAAACAAAAAGGAGCTGCCTTCTTCAGGCTGGGCTACACACTACTTACTTCATGCATTACGCATACAAAACACTCATACACCCACAGACGCACAgttcacacccacccacacatagattacacaaccacacactgaggcacacacacacacagatacaaaaaCCCACACAAACTGTACCCTCTGCCTCACTGGGCTGTGTGTGCTTTTCATCCTGCTGTCCGCCTCCTCACTGCCATGGAAACGGGATCCTGTGCCCAAATATCTTTATTGTCTGTGATTGGGGGTGGGGTGTCAGCCTGTACTTTGAGGTTGGTTAGGGGggcatctctccctccccatggCCCCATAAGCCTTGTGAAGAGCCTCCACACATGCACAGCTGCTTCACTAATCCCCTTTATTAGCCCAGTGACAGGAAGCACCAAGCCACCGTTACACCCAGGTCTGTCTGGGAAATGCTCTCTTTATGTTGTCCCATATTACACTGTGTCTGACATGCAATTAGTATTATGGGGGAAAAGGGCTGTGTTTTGAAAAGTCAGGCTGATTATTAGAATTGTAGATCAGTAGGTAGAAAATGgggcttgcaatgccaggatagtgggttcgattcccgggaccacccatacgtaatATGTATACACGCttgactaagtcgctttggataaaatcgtctgctaaatggtatatatTATTAACTGTAGCAGTGTGGCAGATGTGCCTCCAAATCTAGAAAACGGTTTGAGGTATTCCACTATGTGACTTGTTTAGTGCGTCAGCAGTGCATATGCTACTGTTCAGCACCTGCAGGAGATTGTGTGGCTAAAGTCAAAGCAACTTCTCTGTGCCATTCTCATCTTTCCTTATAGTACCTGTCAGCTTtgctctcctctacctctccctggtCTCTCCATCTATAGCAGTATTTTTCTAAAGGGAAGTAAAGCAGCATTTCTCTCTGACTGACAGGGAACACTGTTGCATGTTAAGAGCATGctggtcagcacacacacacacacacaactcccgcCACCAACTCATTTCTCAGGGCTGCTACTGCGCTTTAACACAGTCAAGTTCTCATGTGTGTCTGTACACAGCTGAGAGTAAGGGAAGATGTGCTGTCTCAGGCCTGAAATGGCTGCTCTGGTGACAGGTCCTGGCAGTGATGTGTGGCGCAGACCGCGTGTTGTTCGTTCTCTAACACACTGTTTTTTACAGGGCGAGCAGATGGCTAAGCCCAGCTCGCCACCTGCAGGCGGCTGCCTGCACACTGGAGGCATCACTAGAGGTCCTGGCAGCCTGTTTCATACCCCATGTATAGAGAAGAGAGGACCGGACTGGGCAtcagtataataataatacactgcCCAATGCCCAGGCACCCCTTACGAATGCAATAAAATGATGAGAAGAATGTCAATGTGCCCTCgtgaacagtctgaatacataccaacacatacgTGTTGGAGAATGTGCCAAATCAACTCCTGTCAAGTTTGATACTGCAAGTAGTTCATACGGTTTACTTTTTCAATTACATTTGTTTGTATGTGAATTATACATTGGCATATGGTTTTATGGAGTAATTATTTGTTGTGCGAGGCCAAGTCTTGAGTAAGCTAGACACTTGTGTACAGTAGGATGCAGATTTCCATGGTTCCTTTTTCAACCTTATTATTCCAAAGCACACAATTTCAGACGCATAAACAATTCTGATTTCGTCGGGAAAGCCTTGAAACActtgttcattttttatttgttGTAATGTTTAAATCGTGCTTCTGCAGAGAACAGTATGCATTTGGCTAGGACATTTGTGGACTTATTAGATTTTTTTCTGCCAAGGTAACTTTCTTTCCTATTTAGTTCAAATGTCTTTTATCATGTTCATACACTGCATCTTCTTCATAAGAAGACTACTTGACTGCACCTTTGCTTGTGTTACCTTGTTGGACAGCGCAGTTTGTTTCAAGCGGCTGAGCATTGCAAGTCCTCTGGACCGGTTCAAATGTACGTAACACAACTGGCAGTCTGAAAAAGAGCAAAGCCATTTCTGTCTGATGTGATTTGAGCAGGCCAATGTGAGCTGGAGGTTTGTTCCGTTGTGTAGATGTGCAGCCTGTTCCTCAGCCAGCGCACCATTTCATTAGCTTCAAATGGTCTAGATGTCTAAACAGCTGCAGCTCTCCTGCAGAACCAAGACAGGAATTATCATTTTGATAATTGCAGCTTATTTTCGTGGATGCTTCAGCACTTCTTAATTTGCCAGAGGATTTTCAACAGTTCAAGTGTTCTGGTTACTGTTGTCTAAATGTGCTTGTGCAAGTAGTTATATTTTTtaccaataaaaaaatattttgtggaAGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867242 lncRNA upstream 80508 48044503 ~ 48044810 (+) True G1632009
TU1867221 lncRNA upstream 119276 48005725 ~ 48006042 (+) True G1631988
TU1867205 lncRNA upstream 166034 47956780 ~ 47959284 (+) True G1631975
TU1867147 lncRNA upstream 279586 47845061 ~ 47845732 (+) True G1631918
TU1867085 lncRNA upstream 352347 47772701 ~ 47772971 (+) True G1631857
TU1867689 lncRNA downstream 71539 48200919 ~ 48201175 (+) True G1632372
TU1867690 lncRNA downstream 104942 48234322 ~ 48234619 (+) True G1632373
TU1867720 lncRNA downstream 127794 48257174 ~ 48257474 (+) True G1632402
TU1867723 lncRNA downstream 131055 48260435 ~ 48260654 (+) True G1632405
TU1867727 lncRNA downstream 135211 48264591 ~ 48264814 (+) True G1632408
XM_036954960.1 mRNA upstream 13671 48008094 ~ 48111647 (+) False LOC110498040
XM_036954973.1 mRNA downstream 31373 48160753 ~ 48166744 (+) True LOC118941486
XM_036954974.1 mRNA downstream 121732 48251112 ~ 48582548 (+) False LOC110498372
XR_002469766.2 mRNA downstream 432186 48561566 ~ 48564328 (+) True LOC110498048
XM_036954983.1 mRNA downstream 459564 48588944 ~ 48677474 (+) False LOC110498046
XM_036954978.1 mRNA downstream 459852 48589232 ~ 48677474 (+) False LOC110498046
TU1867071 other upstream 376236 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 464083 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 1865670 46257919 ~ 46259648 (+) False LOC110498004
TU1864938 other upstream 1899498 46225382 ~ 46225820 (+) True G1629912
TU1864795 other upstream 2108679 46013724 ~ 46016639 (+) True G1629779
TU1867715 other downstream 449398 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 460245 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 569677 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 1034574 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 1034574 49163954 ~ 49178402 (+) True zgc:193593

Expression Profile