RNA id: TU1867715


Basic Information

Item Value
RNA id TU1867715
length 224
RNA type TUCP
GC content 0.57
exon number 2
gene id LOC110498372
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48251112 ~ 48583066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACGCATGTCCCCCAACAAAGCTGTCTTTATGGGCTTCCTGGAGCTGATAGTGGAGTACTTCAGACGCTGTGTGATGGAGATCTTTGGCATCCTGGAGGAGTATGAGATAGGGACCATCGGCCAGAATACCCTCCTTGGGGCTGAAGCCTGTGACCAGGGGGAGGAGCTGACCTCTGAAGCTGAGATGGACTGTGAGGCCAGCCCACCAGAGCCTGAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867936 lncRNA upstream 5965 48572499 ~ 48572813 (+) True G1632595
TU1867935 lncRNA upstream 6345 48572170 ~ 48572433 (+) True G1632594
TU1867933 lncRNA upstream 9865 48568690 ~ 48568913 (+) True G1632592
TU1867930 lncRNA upstream 16574 48561966 ~ 48562204 (+) True G1632589
TU1867892 lncRNA upstream 77978 48500555 ~ 48500800 (+) True G1632552
TU1867714 lncRNA downstream 2166 48581822 ~ 48583066 (+) True LOC110498372
TU1867938 lncRNA downstream 5094 48584750 ~ 48584964 (+) True G1632597
TU1867990 lncRNA downstream 93978 48673634 ~ 48674090 (+) True G1632645
TU1868086 lncRNA downstream 273382 48853038 ~ 48853247 (+) True G1632722
TU1868126 lncRNA downstream 336921 48916577 ~ 48916897 (+) True G1632762
XR_002469766.2 mRNA upstream 14450 48561566 ~ 48564328 (+) True LOC110498048
XM_036954973.1 mRNA upstream 412034 48160753 ~ 48166744 (+) True LOC118941486
XR_002469764.2 mRNA upstream 449398 48124007 ~ 48129380 (+) False LOC110498044
XM_036954971.1 mRNA upstream 452160 48122225 ~ 48126618 (+) False LOC110498044
XM_036954960.1 mRNA upstream 467131 48008094 ~ 48111647 (+) False LOC110498040
XM_036954983.1 mRNA downstream 9288 48588944 ~ 48677474 (+) False LOC110498046
XM_036954978.1 mRNA downstream 9576 48589232 ~ 48677474 (+) False LOC110498046
XM_036954979.1 mRNA downstream 9576 48589232 ~ 48677474 (+) False LOC110498046
XM_021574607.2 mRNA downstream 9994 48589650 ~ 48677474 (+) False LOC110498046
XM_036954975.1 mRNA downstream 9994 48589650 ~ 48677474 (+) False LOC110498046
TU1867254 other upstream 449398 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other upstream 449398 48123948 ~ 48129380 (+) False LOC110498044
TU1867071 other upstream 829696 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 917543 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 2319130 46257919 ~ 46259648 (+) False LOC110498004
TU1867942 other downstream 9969 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 119401 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 584298 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 584298 49163954 ~ 49178402 (+) True zgc:193593
TU1869832 other downstream 1584183 50163839 ~ 50167386 (+) False LOC110498072

Expression Profile