RNA id: XM_036954984.1


Basic Information

Item Value
RNA id XM_036954984.1
length 2581
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110498046
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48588944 ~ 48678169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTTGTTAGTTGCGATGAGCAGTGCAACGTGATGGAGATAACAGTGTGAATGCTTTCCGAACAAACACAGTGGGATATCCCGATGTTTCAACAGCCTTGCTGGGAATGGTGCATCTTTTCACTACGCAAGCGAACGAGTACGTGACATAATTATGTGAATATCCCCAAATTTAGCAACTGTAGATGGAAATTGGACCTGCAAGCGCGTTCTGATTTTTCGTATCACACGCAAACTTGTCTGAGAATCACTCGCGCGTCTTTCCACTGTGGTTGAGTTTGAAATGGTGTGGCGTGGGACCTACCCAGACTATCCTCTGATTTTTCCATGATTGAAGTGTTTGATATTTTCAAATCAGTCGTAAGCCTTTTGTAATTATTGTTCCGAGAGAAATTATGATATTTTTTTCGACTGCAGTTTGCAACAAACACGAATAAGGAGACCAGAAAAAAAGTGGCGTACCAGCAGTCTCGACTTTCTTTGCGGTGCTCCTGGCCCTGGACTGCTTCAACTGTGGAGGGGATCTCACTGAGTGACCATTGATGCTGCAACTCGGGGTGGCTGAGCCTATGCGAGAGTGCGAATACAGCCAGATCAGCACTCGCAGCTCAACCCCAATGGAAACTCCATACAAGAAGAGGACCCCCAAAAAGAGGAAGTGGCAAGCCTTCCCGGGGCGGAATAAATTTTACTGCAATGGGAGGATCATGAtggccagacagacaggggtCTTCTACCTCACCCTCGTCCTCATTCTCATCACAAGCGGACTCTTCTTCACTTTTGACTGTCCCTTCCTGTCGGTGCAGCTCACCCCAGCCATCCCAGTGATAGGGGGGGTGCTATTTGTCTTTGTGCTGGGGACTCTCTTCAGGACGAGCTTCAGTGACCCGGGGGTCCTGCCCCGAGCTACACCTGACGAGGCTGCAGACCTGGAGAGACAGATCGAGCGCTTTGACCACCACTGTCCCTGGGTGGGGAACTGTGTTGGGAAGAGGAACTATCGTTTCTTCTACAtgttcatcctctccctctccttcctcacaaTCTTCATCTTCGCCTTTGTCATCACACATGTCATCTTACGATCCCATCGACAAGGGTTCCTCAACGCACTCAAAGACACTCCTGCTAGTGTGCTGGAGGTGGTTGTGTGTTTCTTCTCTGTCTGGTCCATAGTGGGGCTGTCTGGATTCCACACATACCTGATCAGCTCCAACCAGACCACAAATGAAGATATCAAAGGGTCGTGGTCGTCTAAAAGAGGGAAAGACAATTATAACCCTTACAGCCACGGAAACATATTCACCAACTGCTGTGCAGCGCTGTGTGGACCCCTGCCACCCAGtcTCATCGACAGAAGAGGCTTTGTCCAATCAGACACGCCACAGCCCACCCCGCCAACCAATGGCATCACCATGTATGGATCCACCCAATCACAGAGCCACATGTGTGTTCAAGACCAGTGCATTCAGAGCACCAAATTCGTTTTGCAGGCTGCCGCCACGCCCCTGATGCAGAGTGAGCCGGTCATCCTCACAGACGAGGCCTCTCTACCGGGCAGGACGTTGTTAGGCGGTCCCTGCTCTGGAGCCCTGCCGCTAGGGGGCCAGCCTAcaccccccacctccacccccaacctcaGCTGTGACAATGGCATGCTGCCCACCCGGAATGACCACAGCGAagcgcaccaccaccaccacacggACGGGGTCCACCACCACTTCCTCACGCCTGAGGAAGCCCCCTCGCCACCGGGCATGCTCCCCTGCGGCAGCCCCCTGGGACACAGCCACACCCTTCAGGGCTTCTACAACCCAGCCAGCCAGGACTCTCTACATGAGGACTCTGTCAGAGGCCTGGTCAAACTCAGCTCTGTCTGACAGGGGGTTCACTCAAATATCTGTCCATCCCCTAAAACACTCCCCCCAGGCGCTCATTCCACACCTGTGCCAAACAGTGGGTCTTCCCAACCCTGAATGCCTGTAACCAATATCCTCTCCGTCCTCTACAATCACAGGACTTCTCTAAAAGACTGTGATACTATTTGGCTACTGAGAGCAGAATTGAACTAGGACCTTCCCTCCTAAGCCAACGACTTGCCAAACCTCTGCATCATACAGGGGGTTGTTGCTGGTGAAGGGCCCAGGGGACTTGTGCTTGTCCTGTGCGCCTCTCTTCTACTGAAGCGTAGTCCACTGTCCTGGGAGGGGGACAGACAAGAGGGCTGTCTGTCAGCTATTTAAAGCAGAAAGAGGTGGCGTTGTGAGTTATTCCTAAACATGTTAAAGAAAAGCTGCTTTATTTCTGTCGTGAATCACAGGTCTGCCATTGATTTTTTTGTACAACGGACTATGGCCTACTTGTTGATCTGATGGACAGTGTCTTTGCCTTTCTATCTGATTCTGGTTTACAGTCAATCACCAAACAAGAGTTGATGTCATCATGATGTATATCATTTAATTCATACATGTTTAAGTTACATGTTAAGATTCTGTATTGTGCCATACCAAGGTCATTTCTTTTCCTCAAGTTCTTTTTCCTGTGGATATAttaataaaatcacatttttaagGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867938 lncRNA upstream 4686 48584750 ~ 48584964 (+) True G1632597
TU1867714 lncRNA upstream 6584 48581822 ~ 48583066 (+) True LOC110498372
TU1867936 lncRNA upstream 16837 48572499 ~ 48572813 (+) True G1632595
TU1867935 lncRNA upstream 17217 48572170 ~ 48572433 (+) True G1632594
TU1867933 lncRNA upstream 20737 48568690 ~ 48568913 (+) True G1632592
TU1868086 lncRNA downstream 174869 48853038 ~ 48853247 (+) True G1632722
TU1868126 lncRNA downstream 238408 48916577 ~ 48916897 (+) True G1632762
TU1868128 lncRNA downstream 244315 48922484 ~ 48922710 (+) True G1632764
TU1868129 lncRNA downstream 244653 48922822 ~ 48923115 (+) True G1632765
TU1868132 lncRNA downstream 251159 48929328 ~ 48929659 (+) True G1632768
XM_036954974.1 mRNA upstream 7102 48251112 ~ 48582548 (+) False LOC110498372
XR_002469766.2 mRNA upstream 25322 48561566 ~ 48564328 (+) True LOC110498048
XM_036954973.1 mRNA upstream 422906 48160753 ~ 48166744 (+) True LOC118941486
XR_002469764.2 mRNA upstream 460270 48124007 ~ 48129380 (+) False LOC110498044
XM_036954971.1 mRNA upstream 463032 48122225 ~ 48126618 (+) False LOC110498044
XR_005037764.1 mRNA downstream 109050 48787219 ~ 48792402 (+) True LOC110498051
XM_021574617.2 mRNA downstream 451501 49129670 ~ 49155002 (+) False LOC110498053
XM_036954990.1 mRNA downstream 451613 49129782 ~ 49155002 (+) False LOC110498053
XM_036954989.1 mRNA downstream 451675 49129844 ~ 49155002 (+) False LOC110498053
XM_021574618.2 mRNA downstream 451954 49130123 ~ 49155002 (+) True LOC110498053
TU1867715 other upstream 9994 48578778 ~ 48579656 (+) False LOC110498372
TU1867254 other upstream 460270 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other upstream 460270 48123948 ~ 48129380 (+) False LOC110498044
TU1867071 other upstream 840568 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 928415 47660126 ~ 47661235 (+) True G1631702
TU1868002 other downstream 20888 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 485785 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 485785 49163954 ~ 49178402 (+) True zgc:193593
TU1869832 other downstream 1485670 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 1565450 50243619 ~ 50255252 (+) True LOC110498078

Expression Profile