RNA id: XM_021574618.2


Basic Information

Item Value
RNA id XM_021574618.2
length 2052
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110498053
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49129670 ~ 49155002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTTGAAGACATTTCATATTGTTAGAGCGGCCACTTGAGTATCTGGTCAATATGGATCatctttggttctttcctcatgTGTGGATGATTGAGGTTGCAGCTCGTTTGGATGTTTTCTGTCGCGGCTGTGCACATAATGATATTTAGCGAAATTATTTCAGTCGTAACGGAGCATGATTTGTCAACGCAATGTTGCAAATGATGGGGTGTCGTTACAAAAGTTCATAACAAAGCTGCAAAACATCAACTAGCAGGGTGCCAGTAGCTagcaatgctaactagctagctggtaacATTACCGTTAGCGTTTTTCACAAGTGTGTTTTATCTAATGTTACATTCTAGTTAAATATAGTGATATGGCACATAGGAAAGAAGTATTCCAGTCTAAAGTTCTTCAGAGGCTGTACCCCTTACCTCCCAAGCTTGAGAAAGAACCCAGCTCTTCACCCCCTGAGTTTGTTCTCGACAAGTCCTCTGTGAAACAGAAAGTAGGCCTAGAGGAGGGCACTATCACTGgagatggagggataatacCATCCTCGACCCAGCCAGGCAGACGGATGTACACAGTCGTAGCTCCCCCTGCAGAATACAAGACAGTTGCAGAGGGATCTGTCACGCTCTCTCAGCCAGCATGCATAAATACTGTGCAAGACCCAGCTGATGAGAACACTCATGAgtctgaaggagagggagaaagacaacgactgaggagaagaagaaagaggaaggGAACAACAGCTCCAGGAGGAGGGACAGTCGCGGGACAGGCTACAGACTCCAACCCTGGGGATCCAACCATGGCTCCGACCCCcacagaggagaaaggagagcggCTCAGCAAGAACAAGAGGAGGAAGCTAAAGAAGAAACGCCACAAAGAAAAGCTCCTGTCTCTGGGTCTGATGCCCCGCGCTGCAGCTCTGGAGTTCacctaccagagagaggggaatggggaggaggaggatgaagagatgAGGCAGGGAAGAGCAGCTGAAGTGATGGACTTCCTAAGGACCACACAGGAGATCTACGTGTCTGATCGCTCATTGCCTGCAGGCAGGCTCCATGTGTCCTCAGGGGTAGTGGAGGGCCTTCTGACCAGCCTGTCCAATGGAACATTCCCCCCTCCTGTTTTGGCCCAACTCCACAGCCTCAAGTCCCTGGTGCAGCAACAGGACACGGAGAGGCTTGCCAATGCTCTGCAAGAGCTCCAGAACAGCTCTACCATGTCTCCTAGTGAGGCCACTGCAGTTGTGTCCTTATTTCAGTACTGGATCACAGACATCCTGCCCCTGCAGAGACCGGAAGACAGGCCAACCAACAACACAACCTTCCTAGTTGAACCAACAAACACCGCTTAGACTTTCCTAGATGTTCAAGGTTTTAAACAATACTACTGATGGAAAATGTATCTCAATCATACATTGTGTGCCCACAACCACAACTGTTTGATAAGACCACTACATACAAATGTTCTTAAAGATGCTacctgtcatgacgttgccctctttgggtacagcaagcctatccccctctccctgcctccttcaactaggctgctgtggtcagagagaggtcgtaaattcccgagaagaccctgcctcatggccacagtataagAGACggagtgaattttcatagagaacaaaggaatttcttccacctcacagaacttgaggtccgaacaaatttcatgttccggacaaggtataaaagatcggtgaagaatccagctatgaactggtccatttgttacattttggggaagctcatgggagacggtgtggccacattgccataatgctgtttatataatagcctcagatatgaggttttacatctaattgttgtataagatgaatgagtgagtatgatactgtgtgTAAAATTGTGtgatgtgattttggactgtttaatgaaggaaactcaaATTCCCTTTTGAGTTAAACTAAATACGAGGactgcccctgagcccagttagggtcaggcatcctgggacagcccttttctgcaattccaaataaaacccaactttgagaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868236 lncRNA upstream 17485 49111942 ~ 49112638 (+) True G1632870
TU1868142 lncRNA upstream 182635 48947289 ~ 48947488 (+) True G1632778
TU1868138 lncRNA upstream 188135 48941749 ~ 48941988 (+) True G1632774
TU1868136 lncRNA upstream 192611 48937311 ~ 48937512 (+) True G1632772
TU1868132 lncRNA upstream 200464 48929328 ~ 48929659 (+) True G1632768
TU1868272 lncRNA downstream 8199 49163201 ~ 49163400 (+) False zgc:193593
TU1868286 lncRNA downstream 60390 49215392 ~ 49216482 (+) False LOC110498056
TU1868294 lncRNA downstream 62915 49217917 ~ 49218117 (+) True LOC110498056
TU1868393 lncRNA downstream 171661 49326663 ~ 49369912 (+) False G1633019
TU1868394 lncRNA downstream 171661 49326663 ~ 49370871 (+) True G1633019
XR_005037764.1 mRNA upstream 337721 48787219 ~ 48792402 (+) True LOC110498051
XM_021574606.2 mRNA upstream 451954 48589650 ~ 48678169 (+) False LOC110498046
XM_036954984.1 mRNA upstream 451954 48589650 ~ 48678169 (+) False LOC110498046
XM_036954981.1 mRNA upstream 452649 48589650 ~ 48677474 (+) False LOC110498046
XM_036953827.1 mRNA downstream 5703 49160705 ~ 49167546 (+) False zgc:193593
XM_036954992.1 mRNA downstream 16448 49171450 ~ 49192439 (+) False si:ch211-195o20.7
XM_021574619.2 mRNA downstream 16449 49171451 ~ 49192439 (+) True si:ch211-195o20.7
XM_036953828.1 mRNA downstream 45091 49200093 ~ 49218555 (+) False LOC110498056
XM_021574629.2 mRNA downstream 410854 49565856 ~ 49611711 (+) False LOC110498063
TU1868002 other upstream 429555 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 451968 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 550467 48578778 ~ 48579656 (+) False LOC110498372
TU1867254 other upstream 1000743 48123948 ~ 48129380 (+) False LOC110498044
TU1868247 other downstream 8952 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 8952 49163954 ~ 49178402 (+) True zgc:193593
TU1869832 other downstream 1008837 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 1088617 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 1452384 50607386 ~ 50610479 (+) True G1634948

Expression Profile