RNA id: XM_036953827.1


Basic Information

Item Value
RNA id XM_036953827.1
length 5361
RNA type mRNA
GC content 0.44
exon number 2
gene id zgc:193593
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49160705 ~ 49178402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgccaaggggggtgaatactttcgcaagccactgtatatactgtattctattctactgtattttagtctatgccgcgccaacattgctcatcctaatatttatatattccttacTTCCTTATTGTTGTGAAttattagatattgctgcactgtttgagctagaaacacaagcattttgctacaccaaCAATAACGTGTATGTGAcattaaaatttgatttgatataccaAAGTGTCATCCATAAAAAATGTGACGTCTCCGTAGTTTTCGCCTGGGAGTGCTCGAGATCCCAAACGGCAAGCGGGGTATTTGCTTGAACCCACTTGACACATCAAATTGTGAGAATACTTTGGTTCCGCTCAGCTTTGTGAGTATCTCTTCCGAGGTGGGTAGGATGAACAATTCTCTTTTCACCACTTAATTAAGCTTTTTCATATATATACGCAAGCATTTTTCTTCAGGGCAGGCACCATGGGTGCACACCAATCTGTTGACTGCGTCACCTTCTCCACAATGTCATTTTCGTCCATCCTGCACAGCTCCTCTTTCACCTTCTGCATAAGTGGTATTGGGATTCTGGACACTGTGTGCACTGCATATGTCTGTGTTCTCACTGGTTCTGTTTTGAGCAAGCCATGTTCTCCTAATGCACTCATGAACTCTTCGCTGTGTTTCACCAGGCCCATCTTAGCTGCTGTTGACCGGCTGAGTAGGTTGTCCACGCTGTGCCTGAAAGACATATAGTGGGAAGGAGTAGTGTTTTTCGTTGTATGTGGTGCTTGCTTGAAATTGCCCTAAACAATTCGTGGCCCCCGGTACTTCACAGAGTAATGGTAGACGGCTGCAATGTTCTCTGGAATGTGTATATCAAATCTCTTTTCACACATTACACTAGCTTCTGCTCCAGTGTCAATACATTATTTCCAGGTGTTGCCCCAATGAGGATTTGCACTGTCAATTGGTCATTACTCTTCTCGGCATTGCTAACGGATCCCAAGAAATATGATGCCTGGTAATTTTCTGTAACTTCACTAACCGATTTTGTGTGACACATTCTTTCCCAATGTCCTGTTTTCTGTTCATCTTTCCTGCTTTTTATGTTGCATTTTCCCACACCGGCTGCGTTTTCCTTCTGCACGCTCCGTGTCCCTTGAATCTCTGTTCTCATTGTGTTTTGTGCGCCATTTTGCTATCTCTTACTCACATGCTAACCTCTGACTGACGGACTGTTTTTATAGTCGTTGCTAATATGAGATCTGACATCAACTGCAGTTTGCGAGACCGTCCTTTATCCAGTCCTGAATATGCTAATCTCTACGAGCTTTCAGAGCATTGTGACTGCTGCGAATAAAGTGCTCTGATAAATGCCTCTTCCTTTTCCCCAGGTAGCTGTATTCTTCAATCAGAATACATTtctttccccacaaaagggctttttaCAGACCGAAATACTCTTCAGTTTCATctgctgtccgggtggctggtctcagacgatcctgtaGGTAAAGAAGCCGAATGTAGAGATCCTGAGCTGGCGTGGTtaaacgtggtctgcggttgtgaggccagttggacgtactgccaaaccGCCTGCAACGTCATATTGGAGAATTTAtggcagagaaattaacataaattatctggcaacagctctggtagacatgcctgcagtcagcataccaattgcacactccctcaaaacttgagacaattGTGGAATGatgttgtttgacaaaactgcacattttgtccccagtacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttgatttgccacacctgCCATGTGGGtatattatcttggcaaaggagaaatgttcattaACAGATGTGATCACATTTTTGagcagaatttgagagaaataagctttttgtgcataggaacatttctgggataatgtatttcagctcatgaaacatgggaccaacactttacatgtgttatttttgttcagtatattccCACATGACAATATGAAAGTCTGCTTTCTCATTTTCTGATACAAAGGTGAACGATTTGAAAACGTCCTCTGCCTTGCTGCACATGTCATGTATGAGGGACTTGCACATCGCTATCTGCCTGATCCAACTTGGTCGTTGTTCTGAACCCCATAAAATGTTTCCATTCCGTCGGTTTATCAAAGTTAACGTTATGCGGCGCTTCAAACTTCGCCACAGTCTACTTTCTTAGTAGGATGTTAGCCTGTCAcgcacttctgacaccatgtaaTATAATGTGAATGTCCAGTCAGGAGTATCTTTCTAGGTAAGTTGTTTTTAAATGCACGTCTCACAAGAATGCCTCAACTCACGCACTGCCTCATACTGCTTTACGACATGCCTTAACACTGTCCTGCATACTATGACAGTCATATTTTGGGGTGATGTGGACATGCATCGTATCTTATTAAATATCTTTTTTTTGTGAGTAACAATCTACTTGTACTAACTTTGGGGAAAGGATACTCTGAAAGCTCAGTTGCCTAGTTGAGTGAGTATGAAATGTTCAAGCCACTGTTCAGATGTTCTGTTGAGTGGAGGGTCATTACTGGTTCCTCTGTGACACTGTTCCTTCTCTCCCTATCCACTGATGTTATCAACCGAACAACCTTATTATTAATATTCTTCTGAGCTGGAGACCACCCCCTGGCAAGTATGGACCCAACGACACAAAGGGATATTAAACCTCAAGGAAGGTGCTGACTTAGCAAAAAGAGAGGAGACACTGCTGCCAACATAATCAGAAAAACATCCAGATCTCCCAACTAGGCCGATTTGAAGGAGTCTATTGTTGCGGGTTCAACTCACAACTAACGATACTCTCTCTGCCCTTGGGAAGGGGAAAGCAGTTAACCAACTGGTGTTGATGTGTCCTAATGCTCATCTTATTGGAGGTAGCCTACCATTTAGTATGCTTGACCATATAGCGTTACTTCTAACCATGTATTACTACTGTACAGCTATGCTGTATGCTGTGTTTACATACTTGATCTCAGCAATCTGACTTTTCTTCTGGCTCTCTAGTGATTGACTTTGTCTCCCTGTTGATGACCTTGTGTAtaatcccccctcctccctgccttACTCCTAGGTCATTGTCTCTGTGCCAGCAACTCCCATAATCCACTCACACACCACctgtgttctatactgtactgtagttgtGTAAAGAGGAGAGGTTATATAAGAGCTTCAGAGGCTGACACGCACCAGGTTGACAACAGCAGGTCCCCACATCCAGGTCCTCTGACGAGCCCTCTTACAGTTGGGTTCTcactggagagaaagagagtctaGGAAGACTGCGAGGAAACAGTTGGAGAGGAACTGACCAGTAGAGCTGTATTTTCACTATCAGTCTCTAAGAGTTTGAAACCCTGGAGACCCGCAGCAAGATGTTTTTCAGACTCCCAAGACTAACTCCTGGATACCTACGGTATCTACAGACCCAGGCTATGGCGAGTGAGACCCAGAGAGCTGGGGACCTGCCCCGTCTGGCCATGCTCCTGGGGGCCTTGGGGATCGGGGTGTGTGGCTACAGCTCCAGGCAGCTGGCACTGCACCACCGGCCCTCTGCCCGCGTGCTGACCTGGATGGACGTTGGGAGCACCCCGGTGAAGGGGAGAGCCCCTTCCTTCATGGACCTGTCTCAAAGCCACAGCATCTGTCAGGACATCCCACCTCCAGCATTCGCTGGGCAGAGAGTGCCTTAAAACAACCACCAGATCTAGAGTGCATGTTTGAATCCCTCAGTATGCAGTACCTAGCCAGGTATGGTGGAGCTTTACTCCACTGTGCTAGCACTTCAGTGTTAACATATGTTGAACCCTAACCCAGAGATCCATAATCTGATAATCAATAATTACTAGCCTCACCTGTGTGAGATTCTGCATTGACATGCAGTATATTTAAAATTGCTGATTGGATGAGTAATTCAACTTGTTGCCACAGTGGGTAGGAAGGTTTAGCTATGGAAGTCTGATTTAGCTTCATCCTGTGTGTCTTTTGTGAAGTCACGTGTTTGGCTCGGCCCCCTGGTACACAGATGGTTGGCAACCCCTCGGGCTGGTTGCCATCCATAAGTGTTGGCAGCTCATCCACAGCCAACAACTTCCATTGATTTCAACTGATAAGAACTAGGCGGACCTATCCATCACTAGAGCTTGACATCCACTGTCAGGTCCAGTCTGGACTGGAGTGAAAGACACAGGTTTTATTTCACAGTGTCTTCAAACGATAGTGCTACAGTAGTCGTCTTCTCTGAAGGTGTCAATTCTCTTACATATTGATATTGTAATGAGGTACATTGCAAGGAAAGGCTGGACGATTGTTCAGCTACAGTTACTGAAGCATGCTAGTGATGACTCTGGTTGTATAGAATGATCCAGACTCTCTTTATGATGTCTCACTGCCATGTGAATAATGTAACTGTATCTATACTGCTCCTTAGATTATAGCTCTTATTTGAACCACGGTTAAAATgatgagggagagcgagagagaacaaaGCTCCTCATCACTAAACCAATTTCCTCCTGTGGGATTAAACCAGGTGGAACATCTGTGAGCTGGCATACAGTACATCGCCCCAATCTGGTATTAGGGGTGAAGACAGGAGACTGGTTCCTGCAGTGCCATGAGCAAAGGCTGTGTTCCAAAGAGTTCATATGATATCGGGTATCTTTAACTAGATTGGGAAATGTGCACAGCATCTTTCAGAATGATAATTTTTCTGTTACTGCTACCAAAGGCCATTATGAATTTCTCAGAGCTAGTGTGAATCACACCTATATTTTCCCCCCAAAGAAGATAGTGAGACTCAAAATCAAACATCCATTGTACAACCACTGGAACCACAGGTACAGTAGAGGTCTGCAAAAGCTGATCCCATAATCCTTTTCCACAGCAGCTGAGCCAGTTTCCTGTGTCTGACAAAATATAAATTTTTAGCAGGACCAGATTAGCTGTGCTAGCCCTGCCACTGCATTTTAGGTCGCTACAAATGGCCCTAATCCACTCAGCAGATGTGCTAATTGGCTGAGCTGGCACCAAAGAGCTACCGGGGCAGTTCCCTCAACTCGTGACAGAGACTGACACTCAAACACTTGTTAATGGACTACCTAATGGTTTTACGCAGAAACATGACATGGTGTTTTTCCCGTTGAGCTCAATTTGGAAACCACTTTTTCAGGAACAGAAAACGAATGCATCCTGTTAGGTCAACACCTATTTCCTTCAAACTATAATATTATGTTGTCTGTACCTACTGCATACATGTATGAAATTTGTAAGGGATTTCTGGGACAAATAAATTTGTTCAACTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868236 lncRNA upstream 48067 49111942 ~ 49112638 (+) True G1632870
TU1868142 lncRNA upstream 213217 48947289 ~ 48947488 (+) True G1632778
TU1868138 lncRNA upstream 218717 48941749 ~ 48941988 (+) True G1632774
TU1868136 lncRNA upstream 223193 48937311 ~ 48937512 (+) True G1632772
TU1868132 lncRNA upstream 231046 48929328 ~ 48929659 (+) True G1632768
TU1868286 lncRNA downstream 47846 49215392 ~ 49216482 (+) False LOC110498056
TU1868294 lncRNA downstream 50371 49217917 ~ 49218117 (+) True LOC110498056
TU1868393 lncRNA downstream 159117 49326663 ~ 49369912 (+) False G1633019
TU1868394 lncRNA downstream 159117 49326663 ~ 49370871 (+) True G1633019
TU1868449 lncRNA downstream 237933 49405479 ~ 49407939 (+) True G1633072
XM_021574617.2 mRNA upstream 5703 49129670 ~ 49155002 (+) False LOC110498053
XM_036954990.1 mRNA upstream 5703 49129782 ~ 49155002 (+) False LOC110498053
XM_036954989.1 mRNA upstream 5703 49129844 ~ 49155002 (+) False LOC110498053
XM_021574618.2 mRNA upstream 5703 49130123 ~ 49155002 (+) True LOC110498053
XR_005037764.1 mRNA upstream 368303 48787219 ~ 48792402 (+) True LOC110498051
XM_036954992.1 mRNA downstream 3904 49171450 ~ 49192439 (+) False si:ch211-195o20.7
XM_021574619.2 mRNA downstream 3905 49171451 ~ 49192439 (+) True si:ch211-195o20.7
XM_036953828.1 mRNA downstream 32547 49200093 ~ 49218555 (+) False LOC110498056
XM_021574629.2 mRNA downstream 398310 49565856 ~ 49611711 (+) False LOC110498063
XM_036954999.1 mRNA downstream 587422 49754968 ~ 49926745 (+) False LOC110498066
TU1868002 other upstream 460137 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 482550 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 581049 48578778 ~ 48579656 (+) False LOC110498372
TU1867254 other upstream 1031325 48123948 ~ 48129380 (+) False LOC110498044
TU1869832 other downstream 996293 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 1076073 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 1439840 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 3407387 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 3407410 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile