RNA id: XM_021574619.2


Basic Information

Item Value
RNA id XM_021574619.2
length 3119
RNA type mRNA
GC content 0.53
exon number 11
gene id si:ch211-195o20.7
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49171450 ~ 49192439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGTAGGTTGCAAACGCTGGTAGGACAGCCCAACTATGCTCCCTAGTGGTCAAGGCCCGAATTTAAAGGACATCAGAGAAGAATGGATCAAAGTTAGAGAAAGTTAGGCCTGTATAAAGTTGATAAAGATGCATTCAGTTCTGTTAGAAAATAATCACATTGCATATTGGGTGTTTTCATGAGAGAAACAGGAGTTTATATGTCTACTTCACCGAGAACAAGTGGAGTTGGTGCACTTGGCTACTTCGTCCCGACTCTTTCGTTGTGCTCAACCCCACCGCATTGACAAAGACGGATCCAATGCGCGGTAGGCTACAGAGGGAAGAAAGGACAACACACGAACTATATTTCCACGAGGAGGAAAATAAATCGATAAAAAAAAGAAATTATTCTACTTTAAAGGTCTCCTCTGCAGCCTCTGCTCTGTCCTGACTGAGAGCCACTGGTGTGTTGCCCACTTTCTCACTGCATCATGGGTACCTTCTCCAGCAAGGACGGCCATGGACCCGCAGGGCCCAGCTTGGATTTGTTCCAAACCCCTCCTACTTCTCCAGTGACCTCCACCCTGCCTGCTCTCACTCCGATCACACCCTCTACACCAGGCCAGCCAGCAGCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAATACCAGTCACATCCCTAGCACCAGTCACAGCCCTAGCCCCAACTCCAGCACCAGTCACAGCACCAGTTACTGCCCTAGCCCCAGCCCTAAGTGGGAAGAGACTCCTGCCCGTCAGCCCAGGCTACTCTGTGATTGGTCCTGGGTTTATCTCCCTGCAAGGAAGGACAGGAAGTAATGCAGCAGTGCCTGAAGGGGTGGTTGTGATGGGGTGTAATGGAGGCCCCACCAGGTCTAGTCCCAGGTTCCCTGTACCCCAGGGGAAGAGCTCATCGATGAGCCCCACCAAGACTCCTTCATCCCTGGGTAGCTCCCTGTCCTCGGCCAGCCCGATTAGCCTGGTCAACCCCTCGGGGCAGAGCGAGAAGGACAGTGGGCTGAGCCTGACCACGCTGGAGCACCATGGGTCTGCGGACAACCAGGGTGAGATTGAGAGGCTGGTGGAGGAGTGTAGGACAGCACTGGGTCTCAGTCCCAGTCAGTATGCAACACTAAACAGCGCAGATGTGTTGAAGCATCTGCTAGTGGAGCGCCAGGAGTTGACCGCTGAGGTCCAGAGTCTGCGGGAGACCATGCAGACGGAGCGAGTGGAGTGGAACCAGTTCCAGTCTGACCTGCAGGTGGCGGTAGCAGTGGCCGACCGACTGAGGGCCGAGGCCGAGGAGGAGCTGAACACGCTCAGAGCGGCTCAGATGGATACAGAGCGGGAGCTGGAGGCTGCCcagcagagacagaaagagactgaTGGGCAGCTGGTCAGCCTGAGAGGAGATCTGAGGGAGAGCAGGCAGAAACTGGTCCACCTCACCCAGAACCAGGGACCAGGACAGGCCCAGGCTCAAGCCAAGACCCAGGGCATGGAGAGGGCTACTGGGGAGACCAGCACACTGGAGACCCAGGAGGGGACACAccggggaagggagagggggatcaGCAGGTTTGGCCGAGGAAGAGGAGATGACAAGATGGAGAAGATGAGTCAGGAAGAAGGGAATAAGAATATAAGTGTGAAAGAGGCTCGAACGGACATTAAGGGTGTGGCCAACAGGTACTTGAGGAACGTGAccaatgaggagaggagtggagaggaagggtgTAGCATGAGGGAGACACAGAGGATAGTCACACAGGAGAGGGCAAGAAGCCTTTCCAGACTACCCGCATCTTCAGACTCCCCTGCTGTAATGAATGGAACATCCCAGTCCAATACTGCCACAATAGCTGGATCTACAAACAAGAGCCAAAGTCAAACCAGAGGAAGAAAAGGGCTAGAATGGCAAGACAGCTGGTTCAGCACTCACAcagGGAAACGGGAGGAGGCATTGAACCAGTACAACTCTGCCCTGGCAGAGCTGCCCCCAAACACGACCTCTAAGACCAGGTCTCAGGATGGCTTTAATCTACTGCTACGCCGCCATGGAGGCTCCAAGAGGAACTCTCTTCTGCGCTGGTGTCAGAGCCGCACTCAGGGCTACAAGAATATTGACATCACTAACTTCAGCAGTAGCTGGGCGGATGGTCTTGCCTTCTGTGCTGTGTACCACACCTACCTCCCTTCACACATCCCCTACTGCACCCTTAGCCCTGACAACAAGAGCGAGAACCTCAGCCTGGCATTTAAGACGGGAGAGAATGTTGGAATCACAACATCACTGACCATGGAGGAGATGCTGAGGGCCGGAGGACCAGACTGGCAAAGAGTTCTGGGATATGTGGAGTGCATGTATCGTCACTTTGAGATGTAACGCCCAGGACACTGTGCTTGAGGGAAACCTCGGCGGGAGGTACAGTTCACTGCTATTGGTGGAAGGATGGGGAGTGGGAGTCACTCCTCTACTAGCTGATATGGTCATTGACAGCCATGTAGAGAAAGTTAGGCTTTGTTGGCACAACAGAGCCCCCTTCTGGTCAAGAGTGCAGGTGCAGGTTGCTGTAAATGTCTACACTGGGACCCCATCAGAAGGTTACACAAAGTAACTGATCTTATCATACCAAACCTTTGCTTGACTCCTAAACTTTTTCTCAGCAGTGCAATCTAAAGCTGCTGATCTGTGTCCAGTGCCTTTAGTACCACAGTCTTCCATTTAAAACATGTTCATGTTTTCTGTCCGTTTTAGCACTCTGTAAATATGCACTTTTAATAAGCACTTTGATGATTGTAATTTAAAGGAGGAAGGGGGAAAGGGAGTGTATGGATGCAGTCTCCCTGTCTAGCAATCCATTGATTCTTATATGTAACTAAAATGTGAACGCTGACTATGTTGCCAAAGATGCAGAATAAATAAAATGGGCAATATAAAGCTAACGA

Function

GO: NA

KEGG:

id description
K23028 SPECC1; cytospin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1868272 lncRNA upstream 8051 49163201 ~ 49163400 (+) False zgc:193593
TU1868236 lncRNA upstream 58813 49111942 ~ 49112638 (+) True G1632870
TU1868142 lncRNA upstream 223963 48947289 ~ 48947488 (+) True G1632778
TU1868138 lncRNA upstream 229463 48941749 ~ 48941988 (+) True G1632774
TU1868136 lncRNA upstream 233939 48937311 ~ 48937512 (+) True G1632772
TU1868286 lncRNA downstream 22953 49215392 ~ 49216482 (+) False LOC110498056
TU1868294 lncRNA downstream 25478 49217917 ~ 49218117 (+) True LOC110498056
TU1868393 lncRNA downstream 134224 49326663 ~ 49369912 (+) False G1633019
TU1868394 lncRNA downstream 134224 49326663 ~ 49370871 (+) True G1633019
TU1868449 lncRNA downstream 213040 49405479 ~ 49407939 (+) True G1633072
XM_036953827.1 mRNA upstream 3905 49160705 ~ 49167546 (+) False zgc:193593
XM_021574617.2 mRNA upstream 16449 49129670 ~ 49155002 (+) False LOC110498053
XM_036953828.1 mRNA downstream 7654 49200093 ~ 49218555 (+) False LOC110498056
XM_021574629.2 mRNA downstream 373417 49565856 ~ 49611711 (+) False LOC110498063
XM_036954999.1 mRNA downstream 562529 49754968 ~ 49926745 (+) False LOC110498066
XM_036955001.1 mRNA downstream 562529 49754968 ~ 49926745 (+) False LOC110498066
XM_036954998.1 mRNA downstream 562531 49754970 ~ 49926745 (+) False LOC110498066
TU1868247 other upstream 3898 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 470883 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 493296 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 591795 48578778 ~ 48579656 (+) False LOC110498372
TU1867276 other upstream 1042071 48123948 ~ 48129380 (+) False LOC110498044
TU1869832 other downstream 971400 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 1051180 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 1414947 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 3382494 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 3382517 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile