RNA id: XM_036954998.1


Basic Information

Item Value
RNA id XM_036954998.1
length 7236
RNA type mRNA
GC content 0.47
exon number 25
gene id LOC110498066
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49754968 ~ 49926745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacatatacacagtgagagagaaagaaagactctctctctcctctcagcacgtacccccccacacacacatgaacatgatcgcactcacactctcacacatacatacactcacaGACGCACTCTTGCTTTAGGGTACCAGGCGGCTTGGTGTTCTTCtcctttgttgtttttgtcattcaTCAGTCTTGGTacggtgtgctgtgctgtgtgagTCTCGCTGGGTGAGGAGTCTGTCTGCGTGGCTGTCTGAGAAAGCCATCTACACTACGCCGACTCTCAAGTCAAAATGATTTGCATACAGGAGGACATGATAAGTTTTCAGGgagcagtgtgagtgtgtgaggggtAAAGAACGAGTGGGATAAAAGATaagtaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaggaCGGACATACTGGAGCATAAAGAAGTTTGGGAGAAGACTGCATTCTGAGACTGAAAATGAATTTGGAAGAGTGGTGAGCCCTTTTTCTCCAGTTTAACGTCTACTATCTTGGGCCACGGAGGAAGCAGAGGTCTGGACCAAAGAGAAATCTCACCCCAAACCATTTCAGATGGAGGTGGATGCAGATGAGAAGCGCCATCGAACACGCTCCAAAGGTACCCGAGTGCCTGTGGAACCAGCGATACCAGAGCTGTTCAGCTGTCCTACACAAGGCTGTGATGGGAGTGGACACGTCAGCGGCAAATATGCAAGACATCGAAGgacagtgacccgaAACTCACCTCCAGGTTATTTGGCCAAGAAGGAGagttatggagtgctgcatcagatgtcttggcctccacaatcacccgacctcaacccaattggactgcagagtgaaggaaaagcagccaataagtgctcattTTATGTGGGAGGTCCTTCAAGAcgattggaaaagcattccagTGTGTACGGCTGCCCTCTGGCCAAGAAGAGGAAAACAGTGGACAGACAGCCTCTGGAACCCCTGGAAGTGCTGGAGCCCATACTGGAACCCCTTGAACCAGCATCCAAGGGGACACCACTCATAACCCAGATGGACAACTCTACTATGGAGGAGAGCTACGAGACGGACGGAACGGAGGAGATGgatgatagagaggaggaggtggaggagggagtagaggatggaggagatgaggaagaggaggaggtagaggatgaggaagaggagagatactCGGATGACAATGAGGAACAGATGGAGCAGGAAGAAGGAGAtgcggagagaggggagggagagggggaggaggtagaTGTGGaacaagaagaggaggaggaggaggaagagggagtagaagaggaggaagaggaagaagatgagGAAGAGTATGAGGAGGAGTTTGATGAGCAGAGTCAAGGCAAAGAGGATGATCAGTGTGTCGGCGGTGGCCATCCCAGATCCGGTCCGACGGGGGAGAAGGACGACAACAACAACGATGAATATGAGAACTATGATGAGCTGGTGGCCAAGTCTCTGCTCAACCTAGGGAAGATAGCAGAGGATGCCGCCTACCGTGCCATGACCGAGTCTGAGATGAACAGCAACTCCTCCAACAGCgccgaggaagaggaggaggaggaggaagaggaagaggaggaggaagaagaagaggaggatgaagaagaagaggaagaagaggaggagggtggggaggaaaGTCAAAGGAAGGGTGAGTTGACTCTGGATGTGGACAGTGATGTAGTGAGGGAGACAGTGGACTCTCTGAAGCTGCTGGCCCAGGGTCATGGGGCTGTGCTCTCTGACAACCTGGATGGAGGAGACTATGAGGAAGGGACGGAGGAGAACGGGGAAGGGAGTCGTAATGGAGGAGGTGGAGGCGGTAACGGTCAGGGTAAACCCTCTAACAGACTGGAGGAGAGtgatgaggaggtgtgtctaAGCAGCCTGGAGTGTCTGAGAAACCAGTGCTTCGACCTGGCCCGCAAACTGAGTGAGACGCAACCGGCCGACCGCTTGGGCACAGGCCTCCCCCATCAGAGCTACCCTGGCGGTGGGGACACCCAGGGGCAGCACCCACATCTCAACCCCCACCCCCACTCCCTCCCCCACCAGCCTTGGTACGGGGATCTCCAGCAGAGCCAGGAGGAGAGGCGCACCCTGGAGAGGAACTACTCCGACATGGTCAACCTGATGAAGCTGGAGGAGCAGCTGAGCCCGCGCTCCAAGGCCTTCTCCAGTTGCGCTCAGGATGACCGCTACCACAACCACATCCACGACCGGGACGAGGACACGCGGTCGGGGACGTCAGACCACTCAGAGGAGGTGTTCGACATGACCAAGGGGAACCTGTCTCTGCTGGAGAAGGCCATCGCGCTAGAGTCTGAGAGGGCCAAGGCCATGAGGGACAAGATGGCTGCCGAGGCAGCGCGGAGGGACAGGGTGAGGTATCATCATCACCATGGAGGCCATCATGGGGAGCACCAATCACGGCACGGCTACGGAGAGGAGCGCAAGGCCCGACTCCATGATGGGATGAAGAAGCCCTACTACCATAAAGATTTATCGCGCAGTGACAAGAAGGAGAGCCGGTGCCCGACGCCAGGCTGTGATGGCACGGGTCATGTGACGGGGTTGTACCCTCACCATCGGAGCCTGTCTGGCTGTCCGCACAAAGACAGGGTACCACCTGAAAtccTTGCTATGTATGAAAATGTTCTTAAGTGTCCTACACTGGGCTGCACGGGACGCGGCCATGTCAATAGCAACAGGAACTCCCACAGAAGTTTGTCAGGGTGTCCCATCGCTGCAGCAGAGAAGCTGCAGAAAGCCCAGGACAAGAGCATCTGTTGTGACGGCTCCTCCAAGTCTAACCAGGGTTCTGACCGCGTGCTCAGGCCTATGTGCTTTGTGAAACAGCTGGAGATCCCTCAGTACGGCTACAAGAACAACGTGTCCACCAGCACGCCACGCTCCAACCTGGCCAAGGAACTGGAGAAGTACTCTAAGACCAGCTTTGACTACAGCAGCTTCACTGACAGCAGCCACAGCAACAATGTCTACGGCAAACGGGCCATCGCACCCAAACTCCAAGGCAGGGACACTTCCCCTAAAGGATATGATGCCAAGCGCTACTGTAAGAACTCCAGCTCGGCAAGTAGCACGACCAGCACCTACGcccccagcagcagcagtagcagcctgAGCTGTGGAGGAGGGGGCGGAGGGGGAGGCAGTAGTGCCAGCTCCACCTGTAGTAAGAGCAGCTTCGACTACACCCACGACATGGAGGCTGCTCACATGGCCGCCACGGCCATCCTCAACCTGTCCACTCGCTGCAGAGAGATGCCTCACGGCCTGGGAGGAAAACCCCAGGATCTGTGTACTCGGAACCCAGATCTAGAGGTAGATGAGAACGGGACATTAGACCTGAGTATTAAGCAGCGTTTGGGGGATGGAGTGGGTGCAGTGCTTACCCCCCTGGAGCCAATGTCGCCCCAGCGCCAGGCCCTGATGCGCTACGGCATGGGGGATGACTGCTGGGACCTGCCAGTTGATTACACCAAGATCAAACGCATCGACGAGGACAGCAAAGAGacAAATGACCTGGACCCGTTCCAGGAGCTGCTGGAGCAGCGAGGTTACTCTGATGATGTCACCATGCACAGCACCAAGCCCAAGTACGCCCAGTGCAAAGAGAGCAAGAAGGACCTGATAACTCTCTCTGGCTGTCCTTTAGCTGACAAAAGCATTCGAAGTATGATGGCTACCAACTCACAAGAGCTCAAGTGCCCGACACCGGGGTGCGATGGTTCTGGGCATAATACTGGCAACTACGCATCACACAGAAGTCTATCAGGGTGTCCGCGGGCCAGGAAGAGTGGAATGAAGATATCACACAGTAAAGAGGACAAGGAGGACCAGGAGCCCATCAGGTGTCCGGTCCCGGGCTGTGGCGGTCAGGGTCATGTGACAGGGAAGTATGCATCTCACCGCAGTGCATCAGGCTGCCCCCTAGCGGCCAAGCGGCAGAAGGACGGTTACATGAATGGCTCCCAGTTCACATGGAAGGCTGGGAAGACAGACGGCATGTCCTGTCCCACCCCGGGCTGTGATGGCTCGGGTCACGTCAGTGGGAGCTTCCTCACACATCGGAGTTTGTCGGGCTGTCCGCGTGCCACCTCTGCCATGAAGAAAGCCAGACTGTCTGGACTGTCTGAAATGCTAACGATAAAACAGCGCACCAGCAACGGAATCGAAAATGAGGAAGAAATTAAACAGCTGGATGAAGAAATCAAAGATTTAAGTGAATCAAATTCACAAGTGGAAGCAGATATGATCAAACTTAGAACACAGATTACCACAATGGAGTCTAATCTGAAGTCAATAGAGGAAGAAAACAAGGTGATTGAACATCAAAATGAATCTCTCCTGCATGAGCTGGCCAGCCTCAGCCAGACACTGATTAACAGTTTAGCTAATATCCAGCTCCCTCATATGAAACCGCTGGCACACAAAGAGGCTTCCATTAGAAATAACAGCTGCTTACAGATGCATCAGAGAGAGCCGATCAGCGATCAGAACTTTGATGCTTATGTGACCACTCTAACAGACATGTACACTAACCAGGAGCATTACCAGAGTCCAGAGAACAAAGCCCTGTTGGAAAACATCAAACAAGCAGTGCAAGGAATCCAAGCGTAACCCAGCCCGCTACCAAGCCCAGCAAATGACAGAGCATCTTCTCAAAGAGGAGTGAAAGAAATCAACATTCGCAGGAAAGAGCTAGAAGTGACATGATAGGATGATGCCTCATGGTTTGCTGCTGTAACATTAGCATACAGTGTTACATATTGATTTTCATTCTTCAAAAAGAAATGTTATGCTTAGAAAAATTCATAATGATTTTTCTTTTTGGTCTTGCTttgaagaaaaaataaataaatgacaaaATAGTTTTTGAAAACATTCACCTTTTGTACGTTTTCATACTGTGTGAGCTGACATAGTGTGATGTAATGTTTGTAACTGCTCACGTATGCACATTTTTTGTGTATATTTCTGAACAGTAAGCTGTATAACATAAGACAGTGCTTGATGATGAAGCATTTTAGATGAAAAAGCTGCACTGGACagtgaattttttattttttatttaaaagggGGAACTGCACGGAGGTAGCTACTTTTCAACGATGTTTTCCTCAATGGAAGACTTTGGAATcctaaagatgtttgttttttcttGTTTGCAGATTGTTGAATAGCAAGACTTGGTTGCAAATTACTTTATTTTTAACAATGCTTGAAAAATTCTTTGTCTTCTTTTTTAAAGATTGGTAGCTATAGGTGGGGGCATTTTTTATGTGTTGGAAATGAGTATGGAAAGAAACTGACTTGATGTTTGTATGAATGTAACAGTTTATTGTAAACATCATGACACGGAAACCCAATGGTGAAAATCCCATTATCTAGAAAGTACTATTCACTCTTGATATTTTGTGTTTGTAGATACCCATTGGTGATGTATAATGGCAATAGAGTACGCAGGACTCATTCTAGCATTTAGTAGTTAGTTCTGTTTCAAATTTCAAAACTTCTGTTGCTAGAATCGGGCAATGTTTCAGCAATATATATCTAAATCATATGTTTATAGAAATGGGATGCAATCTACAGGAAAAAAATATTTGGGTATATGCAATGACTTGTTTATAAACATAGGGGTGGAGGAACAAATTAATCTTTTtactatatataaaataaaatcttTTATATAAATCTTTTAAGTACAAAGAAAGTATTTAAAAAAGTTGGACATTCAGTTTTAAAGATGAAATGCTCTATGAGTTCCACTCTCTTTACAGACAATTTTGCACATAAGGGACACCTTCGTTTCCATGTTTTGATGTTTTTACAGAAACTAAAGCAGTACCTGAGAGCCTACCGGAGGGTGACAAAGGTTTTGTAAAGAGTATTTATACTAAAGTATGAGAGAGAGCGGGTCTTACAGGGTCATTGTCCCCACTTGCCAGTAGACTATTTGCACTTGTCTTAGAGATAGTATCCTAACATGCGGCGGTGTGCAATTTCCAGGTGTTCCTTTTGCACACGATTGGAGCAAATAACTGCTAAGAGCCACTAGGTGATGAATTAGTACCACTGAAAGAGACTACAGGGATTTGAATCAGAAATTACGATTATAACCATACAAGTAATACTGTATTATCAAATGGTCAAACAATGATGCTATTTCATTTTGGTATGTTATATGAATATTAAATCATCCCCAGCAGCACTTTATATCTAATCACTGTACAAATTAAATAGTCAATCaattaaaggtaaaaaaaaaaaaaaaaagtaaaaagagGTTGTTTTCCCATTAGGCTTGGAGAGTGGCACATTCACTCTTCTAGTTGACTCTTCTGCTCGGAATGAGGTGATGCAGTTTCATGTCTGTATGCAGCCCCTCTTTATGTTGTGGTATTAGTTGTTAGCGACCATGTTCAGAATTGGCCTTCTTGAGAGCTAATGCAAAGGTGCTTGTCATTCACCTGATCTTGTCTATTGTACTTTTACATCCTCTTTTAGGGCTCCATCGTCAATGACTGCATACAGTATGCCTTTCTCCACAGCATCGTGTCTGCAGCTTTTTGACAACATAGTAATGCTTTCAGTAGAGTAATACCTAGTATCAGTTTTTGAATTAATTCTCATAATCAGTACAATTGAGGAATTTAAAGCACAAACCGGCTGCTCATCTACCATTAGTACATAATATCAAATTTGAGAAAAGTTATATGTGACTATTTACATAGGGAACACAAAAGGTGTCACATATTAGAATTTTCATATAAATGATTGTGAATTCATCAGAGTTTATTTATTATCACTTATTCATTTTGAGGTTGATTTAAGTAATCATGAACAAAAACAGGATTTTGTACAAACTATTGTGCTCTCTGTGGACCTGAAGTTTAATTTATTTTTGTACTACACAGCATGGATTTGTTGACATTTTAATTTTGCTATAAGTGTGTGAGATCACAAGTTgctgtgatatttcatttttaaatTGTGAACTTTGTACAATTCTTGTCATGCTGGATGTTGACACATCTTACTCTGAATAAAGAAAAATTGTGTTGCGACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869597 lncRNA upstream 1671 49752270 ~ 49753299 (+) False G1634098
TU1869596 lncRNA upstream 1671 49752436 ~ 49753299 (+) True G1634098
TU1868625 lncRNA upstream 81589 49668453 ~ 49673381 (+) True G1633227
TU1868562 lncRNA upstream 143276 49607933 ~ 49611694 (+) True LOC110498063
TU1868580 lncRNA upstream 154616 49598521 ~ 49600354 (+) True G1633190
TU1869679 lncRNA downstream 3744 49930489 ~ 49930872 (+) True G1634175
TU1869681 lncRNA downstream 7131 49933876 ~ 49934170 (+) True G1634177
TU1869682 lncRNA downstream 7733 49934478 ~ 49934697 (+) True G1634178
TU1869686 lncRNA downstream 12943 49939688 ~ 49940042 (+) True G1634182
TU1869688 lncRNA downstream 15532 49942277 ~ 49942612 (+) True G1634184
XM_021574629.2 mRNA upstream 143259 49565856 ~ 49611711 (+) False LOC110498063
XM_036953828.1 mRNA upstream 536415 49200093 ~ 49218555 (+) False LOC110498056
XM_036954992.1 mRNA upstream 562531 49171450 ~ 49192439 (+) False si:ch211-195o20.7
XM_021574619.2 mRNA upstream 562531 49171451 ~ 49192439 (+) True si:ch211-195o20.7
XM_036953827.1 mRNA upstream 587424 49160705 ~ 49167546 (+) False zgc:193593
XM_036955011.1 mRNA downstream 959 49927704 ~ 50024509 (+) True LOC110498067
XM_021574636.2 mRNA downstream 111020 50037765 ~ 50068382 (+) False zgc:113142
XM_021574638.2 mRNA downstream 111020 50037765 ~ 50068382 (+) False zgc:113142
XM_036955012.1 mRNA downstream 111020 50037765 ~ 50068382 (+) False zgc:113142
XM_036955013.1 mRNA downstream 111020 50037765 ~ 50068382 (+) False zgc:113142
TU1868248 other upstream 576568 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 587417 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1054402 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1076815 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 1175314 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 237094 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 316874 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 680641 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2648188 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2648211 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile