RNA id: XM_021574636.2


Basic Information

Item Value
RNA id XM_021574636.2
length 2697
RNA type mRNA
GC content 0.44
exon number 6
gene id zgc:113142
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50037765 ~ 50068382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGAAgagtccacttaatttgagggttGAGGGGATAGGGTGTCTTTTAAGATTTAAAACATAGCcaatgataaatatatatattttacattgtttgcaaactgatatgtaacatgtattaatgccaaaataacatgcaaaacaggcaagccacTCCCATCATTTTTCATTCGTATTTATTGATTATTTTTTTGCTAAAATTGTGGGGCtctcacctgccctgaatgacgggtcgccactgcgcGTGTCACAGGAACATCGCCAAGAAGTCGACATAACGACGACCAGCTGGAGCCTGATACACAGCCAATACAGgaggtggcggcatgcacctaTCCTTTGTATGTGCATCGCCTTCTTCGAGATAGAACATCTCAAAGAAGTTGACGTGACATCGACCAGCTGGAATAAATAGCCTACACCCCTGGTTGAGAATGGACGCAGTTGCTGACAATTTTGCAATGATGGGAAGCATTATTGGATAACTTTTAAACATCGTTGGAATGGATGCCGCTGCGCTCACTTCCTTCCCCTTTGGAGGAATCGTTGTCTCATCCGTTTGTGCGATCTTTCTCCTGGCCCTCATGCTCTTGTCATGCCGAGGCAGGAACCAAGAGGTGATAGGAGCGGGCCGTGCGGTGCTGATAACGGGCTGTGACAGCGGATTCGGTCATCATCTGGCCCGCAGGCTGGATGCTCAGGGGTTTGTGGTCTTCGCCGGTTGTCTGTTTCCCAACGGAGACGGTGCCCAAACTCTGCACAGAGAGAGCTCCAGCAATATGAACATTCTCAAGCTAGACGTCACTAAAGATGAAGATGTGACACAGGCAAGGACTGTGGTCCAATCTAACCTGCCAGAGAAAGGGCTTTGGGCAGTTGTGAACAATGCTGGCATCTCAGACTGGTCAGAGACAGAGTGGAACACCATTGATGATTATCGCAATATGGCTGAGGTCAACTTATTTGGCAGCATCAGGACCTCCATAGCTTTCCTCCCATTGGTTCGTGCCTCAAAAGGACGGATGGTGTACGTCTCAAGCATCTTTGCCTTCTTCAACTGTCTGACCATGGGGGCCTACAGTATGTCAAAGAGAGGACTGGAGGCGTTTGCCGACTGCCTACGGGTAGAGATGGACTGTTTTGGAGTAAAGGTGAGCATCATCCAGCCAGGTAACTTTGGTCCTGCTACCAGCATCCTGAGGCGGAGAACAGGGACAGAAATCTGGGAGAAACTGGACGAGGAGCGTCAACAGATGTTCAACAGACAGTATGTGGACCTGGCTAATAACTACCACATGTCTACATGTATGACTGGCAACCAGGACAGCAGCCTGGTCATAGACGCTATGGTGGAAGCCCTCACAGCAGACAGACCTAAACGCAGATATCTGTTGGTCTCTAAGCTGGATATGTTGTTCTTCTATGCCTTTCCCTATCTGCCGACATGCGTCACTGATTCAGTTTTCTACCTCAGTCCCATGTACAACAAAAGAAAAGCAATGCTTTATTCCAAATAGAGAATATCTGTATTATGAGTGACAGTAGAGAAAGTGTATGGCTTTGTGTTATGTTGTAATGTGCAATATTTTTACATCGCGCTTCTCACTTATTCTGTGTTGCAAACTTGCTTGTGAATAGAAGATGTTCGGGATGTTACTAAGAGGATTCAATGGCATGTTACTGTGTCTTGCATCTGCTTGCTTCACTCATAACCACAAAATTACATATTTACCtgatttgtttgatattaatagtTAGCAATTGATACTTAACAAATAGGAGGATATTTCTGTCCTGTTAGTGTCTGTGTTTTTATGGTCTCCCCTCTAGTTTCCTGCAGCTAATCTGGGCATATGGTCACCAGAGATGGCTTGAGCTGACAATTTAGTTAGACTGCCTTACATAGACAAGATGTATGTGGTGGGTGTAACCGAGATGGAGATAGCCAGGAGGAGTTTAGAACAATTCCTCATTGTCTCTAAATCATCTAAGCCAGGGTGGGGTAAAGACAACAACCCACGTGCAGATAACGGCAGGATGAACCCAGAGTGgtttgatgctccttggtctgCATGAGGGGGGTTGAACCAACCATGACAGAGCATTGTTAGTGTCAGCTATATATAGTACTCTGCATTTGTGTAAAGGTTAGGTTACTCAGTCCAACACTCAAGGGTGTGGGGTTGACCAGCCTatttattgcaataattaatcgatatttaataaagatgattgtttgaagaaattacAATCTCTCTCAGTACTAAATTTCCACGACAGTATACAGaacctacactacatgaccaaaagtatggggACACCTGCtcttcaaacatctcattccaaaatcataggtatcaatatggagttggtccccccccctttgctgctataacagcctccactattctgggaaggctttccactagatgttggaacattgctgcggggacttgcttccattcagccacatcatgtctgtgtgctcaattttaaacacctgtcagatttgggtgtggctgaaatagccgaatccactatttAAAGTgtcgtccacatacttttgtagatATTGTGTATGTGGTTGTTTTATTCAAGAAGTGGTATGCAACGTTCTTTATACCAGTTTGTTTTTCTCAGTTATTTACTATAATACTTTAAACACAATGCTTTATGCAATAAACTTGTCAAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869703 lncRNA upstream 42988 49963673 ~ 49994777 (+) True G1634198
TU1869696 lncRNA upstream 62833 49956626 ~ 49974932 (+) True G1634192
TU1869695 lncRNA upstream 81706 49955830 ~ 49956059 (+) True G1634191
TU1869692 lncRNA upstream 89575 49947978 ~ 49948190 (+) True G1634188
TU1869688 lncRNA upstream 95153 49942277 ~ 49942612 (+) True G1634184
TU1869793 lncRNA downstream 24185 50092567 ~ 50092905 (+) True G1634280
TU1869805 lncRNA downstream 39626 50108008 ~ 50108236 (+) True G1634292
TU1869806 lncRNA downstream 40090 50108472 ~ 50108736 (+) True G1634293
TU1869807 lncRNA downstream 40745 50109127 ~ 50109346 (+) True G1634294
TU1869788 lncRNA downstream 78813 50147195 ~ 50148050 (+) True G1634275
XM_036955011.1 mRNA upstream 13256 49927704 ~ 50024509 (+) True LOC110498067
XM_036955005.1 mRNA upstream 111020 49755423 ~ 49926745 (+) False LOC110498066
XM_021574639.2 mRNA downstream 19884 50088266 ~ 50144649 (+) False LOC110498069
XM_021574640.2 mRNA downstream 32643 50101025 ~ 50144649 (+) True LOC110498069
XR_005037768.1 mRNA downstream 95263 50163645 ~ 50168749 (+) False LOC110498072
XM_036955015.1 mRNA downstream 95264 50163646 ~ 50168749 (+) False LOC110498072
XR_005037766.1 mRNA downstream 95265 50163647 ~ 50168749 (+) False LOC110498072
TU1868248 other upstream 859363 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 870212 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1337197 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1359610 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 1458109 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 95457 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 175237 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 539004 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2506551 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2506574 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile