RNA id: XM_021574639.2


Basic Information

Item Value
RNA id XM_021574639.2
length 9652
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC110498069
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50088266 ~ 50144649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTCACGGGTAGACGGGTAGAGAATATTTATCGCTGCGCATTTGGAAACACGCGCTTGGGCACTTGGTATGCGCTTTTTCAATCGCTGTAGTCTACAAATAGTCTGCATGGATTGGTTCTATCAATTTTTTTGGTTTCACATTTCGATTGTTGTATAGTTTTTTTTCAAATAAGTCTATTATCGACTTTTTTAAAAAAGCAGCATTTCGGGCAACCATGAGTAAATCAGGAACATTAAAAATAAAGAATTTGTTTCATAAAACAAAGTCACTGGATAAAGAAAACAAGGACGGGAAAAAGCACACATTTAAAGATGCAACTTCATATGGAGATGGAGAGCTTGCGAGCCCAGGCCCGAGTTTACCGTCGAGTCCCGGACTTGTCAGTCCCGTCAGCCCCCTGGATGGGACGCTGCATAGGAGTCCAGCAAGTGAGAAGAAAAATAAGAAGAAGCGGTTCTTGTCCTTGCAGCTCAAGAAGAAAGGCTCAAAGGAGGAAGGGCGCATCGACGACCCACTGTTCTATAACGGTGCTGACGGGCTCCACAGCTTCAGCAGTAACATgAGTTTTGACCAACTGAGCGTGAAAACAGAATACAGCACCACGACTGACAGGGATGCTACCTCCATGATCAGCTATGACATGTCAGCCTTCAACAGCCTCAGTCCCAACAAGTCCAGAAATAAGAGCTCAGACAGAGTGTTGAACCGCATCGGCAGTTTTTTTTccataaagaagaagaagagccgGAGCGGTTCACTTTCAGCAGACTCAGAGGATGGATCCTGGCTTGGTCCTGGCTCTCCCGTCTCCCCCCAGTCCCCTGGTTCTCCCGTCTCCCCCCATTCCCCTGGTTCTCCCGTCTCCCCCCAGTCCCctggttctcctctctctccccaccaacctccaCAGGAAGACTGGCAAAGGACCCCCACCACCAcccggagagagggggaggtagtggAAGCCGGAGCTGGGCCAGTGCAGGGAAGTTTGTCAGAGCTCCAGGAGGAGGGATCGATGTTCAGTACCAGCTCCAGCCCTGGTACCTCCAGCCTAGCCTCTCTGGTGGTGGTGGACAGAGGGGACCTTTTGTTTGCAGGCAGCGACAGCAGCGGTCGTGGCAGCGTGAGGGAGGTGCAGGTGTGCAGGGCGAGCCGGGCCGAGGCAGAGGCAGACGGAGAGGCAGACAGGAATTCTTGGAATCTGACTCCCACGAACTCGTCCTCCTCCGGAGCAGACCAAGTCCCAGGGCTCAGCCCCACTGAGGATGTAGTGGGAGAGGCGAGCAGGAGGCTACAGGTACATCTGGAACAAACCACTGTGAAAGACAGAGATGGGTCTGGAGGGGGCAGCCCAGTGGTCCAAAACACCCTCAGGTCGTTTGACCTCTCCCAATCTCACCTTAAGGCTGACTTCACCTCTCTGGTCACAGAGTCTAAAAAGACCTCCCTGAAAACATCTGTTGGAGGGAAGGGGAGTTACCTGGTGGGAGTGACTGTAGGCTCTCAGTCACACACCCCGTCCTCCTCAGATCCCCagccagagggggaggaggggaaggacagCCCAGCCATGGGGAAGAAAAACAGGAGGAGGGCTCTGAAATCCATCAGCAGCAGCACGCCTGAAACAGCTCCCCCCACACAGACCACGTtacatgggggagaggaggggacgaCGCAGGACTCACCAGTGAAGCTACACAAAGCCTTGTGGGTGGAAACACacctgggagaagaggagggggagaggaaggggaagaggaagagTTTAAATTTGCATTCAGTCCTGGCCATACCTATGACTGTGGCCCCTGTGGAGTACCCTGATACTGCAGGTGTCCTGGCCACTCTAACTCCTTCAGCAGTATCAGCAGCAGAGGCCAGTGGCAGAGAGCCAAAGCCAAAGCTGGCTGTATCTACAGCACCAGCCTCCAAGGAgtccaaaacaacaaacaaagccCAGCCAAGGGCGAACAGTCCAGGCACAGACTCAGAGAGCAGCACCCCTCTAGAGTACCAGATGGCCCTGAGCAAAGAGGAAAAGCACAGGAGTGTGAAACTGTCCCGCAGTGAGAAGATTTTCCCTAAGAAGGTGTATGTGAGCCCTGAGCCCAGTTTTGACGGGGACGAGCAGACAAAAACAGAGCTAGAAAATAATGACATCGCAGACTTGGCTTCAAAGATTCCTCAGAAGTCTGAGGTGAAACTCTCGCCAAGCCCCCAAAAAGTTTATGTAGACCTCAAGGAACCAAACAATGACTGTATCATCACTGCTGGGGAGATAACCAAGGGTACAGACTCTGATCAAAGACACCATGACCCCATGGCTGTAGACAGTTCCCCAACGTCCCCAACCCCAGAGCTGGATGAGGCCTCTCCAACCACAACTATGCCAGGACGTAAAACACAGCCCAACACAGGAGGTTCAAGGGTTAGATGTCAGGGGACGACCCAGGTCACCCCGTCTAAACCAGGTGACAAAGTCGGTAATGTAGCCAGTCGGTCAAAGTGCCCCCCTCCTCCGGTTGGACCCAAGTCCAAAGCTGTCCTGGGCATGGCTAAGGGAAAGGGTCTGAAAGATGGTGGAAAGGCAGGGATTTCTAGTGGGGCTCCATCACAAAGGACACCTAAAGATGGCAGTGAAAAAACAAAGGTTATGTCACCTACATTAAAAGATCAACCCACCGCAGGAAAAACAGAGGTCACCGACAGCCCCAAGTCAAAAATTCCCAAAAAGTCACAGACAGAAGCTGTATCAAAACCTCCACTGTCACCAGGCACAACCTCAGTGGTTGATGTTTCAGTGGCTGTGTCTCTACCTGTGCTTGGTTCCAAACCCCAGAAGACCCCTAAACCTAAACATTTAATGATTAAAACAGACAAAAAGCCTATCACCGAGGAGGTGAATGAAGTGGGTTCAGGGGGGAAACCAACTCCAGGGCCTGTTACGTCAGAAGAGGCATCACCTACTAAAGTACCAGTCATGTCACCTGTGAACTCAGATAAGGTAAACCTATCCAATGGGATGGAAAAAGACcctgaggacaacaacactgacaTAGCCAAAACAAGTGAACCCAAAGATGTCAAAAAGCAGGCTCCCACACGCCCAGACAGCACCAACAGCAGCATGATACCAAAGAGCCGGTTACCCAAAGCCCCTGACAACTCTTTGTCTCTGGTCAGAAAGATGAAAGACGGCAAACTCCAAACCATCGACACAGGGAGTAAAACTACCAAGACCACTGAGAGAGCATCAGTTGTCAATAGTAGGCCTTCCACACCAACCAGCCCAAAGCAGCAGGAGCTTCCCAGCCCAGAGGAAATGCCCCCAGATGAGACAATGACCACTGAACCTGAGAAGGGAAGCAAGCTGCCCTGCCCTTTGCAAACAAACCTGCCCCAACAGGCCTCCAATAAGAGCACCCCCCGTGATGATGGGGACACACCCACCCCTCCCTCACTGTTACCAACCAAGCAAGAGAAACCCGCCTCCCTTGGACTTAAGAAGCAGAGTAACATCACATCTCCCACCATGGACATGACTGCTGATGATTCTGGGAAGGCTTCACCACTGAGTTTGAAAAGTCCAGTGAAAGATCCAAGTGATTCTGTGACTGTGGCTAGCAAGCGTGCAATGTTCCGTCAGGTAACTCCCCCTAAAGGCAAGCCCAGCAAGCCCCTCAAGAAATATGAGCAAACTATGAACTCTGACCACAACTATGTGGAAGCCTTAACCAATACACCACTGCAGCAGATGGGTCCTGTAAACCCAGGTGTAGTCCTGGAGAAACGCCCAACTGAACCAAGCCTCATTGTGTCTGCCTCAAGCACACCTACCCATGAGGAAGTAATATATACATCAACCAAGCCTGAATTGACTGACTACATTCATACTGACACTGAGAACCAAGCTAATCAGAAAAGTGATGAGTACAATGAAAATACTTCTACAGCTTCAGAGAAGCTCATACTTAGTGCTGGGGAAGGGATATCCAATACGAATCAGCCTGTGGAACATGGCCTGGATGTAGCAAAGGATAGCTCACCCAAAAACGCCTCCACTGTGGTTGAAAGAAGAGAGAGTCAAGATACGGCAACACAGTCACCTTTCTTTGGCTCAGAGGAAAAATCTAAGAAACTAGCTAATGCTCAAACCCCCGATATAGTACCTATTCGTAATGGAAAAGTTTCTGATATATCCATAGTGTCTGGGAAAGAGACTGAAGTACAGAAGGGGGGAGAGCCAGTGAAGGTCTCCGACATCATAACAGAGCCTGCGATTGTTCTGAAACCAATTAAAAATGGTGAGGTCCAACTGAACAAAGAGCTTCCTTCACTGACACAGAATTTGGCGGATGCACATAGCGGGCCACACAAAGAAAACAAAGAGGACAAACTGGGTGAGGCGGCAACTAAGAGCACAGTTACTAAGATGGATGCAAAACAGGAATCAAAGACCATAACTATAAAAGATCAGAAGGAGAAAGTGGCAAAACAAGAAGAAAGACCCAGCGAAGGAGCGACTAAGATATTAGACACAAAACAGGACTCAATATCCATAAGAACAAAAGCTCAGGAGAAGGTCTTGCTCCTCAAAGAACCCCCTAAAACGACAAAAGCAAACCCCAAGGCTGAGCTGCCTCCTCAGCTGCCAACTTCTCTGAAGCTCCCCTCTCCCCCTAAACCTCTCCCTCTGAAACAGGAATCTCCGTCCAGCTGGCTGAACGTGGAGCGCGGCTCAAAACAGGAGCAGAAGAGGGAGACCAAGAGAAGGCTGGACTGTTCAGTCAGCGAGGATGAGAGTCTGGCTGAGATTGACAATGTGGATGACTTCATCAGGAGCATTAAGGAACTGGGCACCCCCTTTCCCCTGCCCCCCAAGAGGCACCACGACCATGCCAAGACCTCCTCGCCCCCCTTTGCCCTGCCCGCCATCAAGGAGGACCGCTTCGAGAACCCTTTTGACGCTGATGGCTTCCAGTTTGGCCTGAAAAAGAGGACAAAGGATGAAGAAACCCCGGCCATGTTGATAAAGAAACAGGCCAGGGAGGAGAAGACACAGCCAAGAAGGGCTAATGCAGAGGACAGCCTTCTATTCAAAGCCCTCCAGTCTCCATCTAGAGCCCGAAGAAAACCAGGGTGTCAAACAGATGGGAAAGATGGAGAGGTGAAAATTAAGGTAGAGGCGAAAATTAAGGTAGAGGCGAAGAGGGAAGTAGAGGAGAAAGTGGAGCAAGGGGAAGAAACCGGTCAGCTCACGTCACGGCTAGGAAGGATGTCCCTACTCTCCAACCTATTGAGCTCCCCCAGGACTTCCAGAAGGAACAAAGGGGATCCTTCCTCCTCAGTCTCTAATGGtgctcctccctctcctaccacCCAGGGCACAGTGCCAGAAAGGGCGGGTTGGAGAAGTATGAATCCGGGCCTGAGTATGGGTGTGGTTGCAACTGGTGAGTCAATAATCAGtccttcctcacctcctcctctccccttgttCACTGAGCTAAAGCTGCCAGATCCCCTGGAGCAGTATCTCAGGACAGACAAAGGATCCTCACAGAGTAGTACTACACAGAGTACAATGGCTAGCCCTGTAATGGGCTTCGGTCACACTACTGGACTAAAGGGACTTACCTTAGGACTTCATCCAGCCACCAACCACATCCCACAGCCCCCTCTGAATGGTCTTCCTGCAGCCAACCCCAAGATTCCAGAAGTGAGAGGGTTCCACAAACGGCCTGGGAAGATAGTGCTCCATGAGCGGGCTCAGTTTGAAGGAGAGGCCTACGAGGTGTTTGGGGACGTAGAGGATGCCTCCATGATGAAGCTGTCTCCTGTCATCTCAGTCAGGGTCATCAGGGGATGCTGGCTGCTGTATGAGAAGCCAAGGTTCCAGGGTCGGACCATCGCCCTGGAGGAGGGGCCCATGGAGCTGGTCAACGTGTGGGCAGAGGAGGTGACACCAGGGGCACTGGATCACATGGGTCTGCCTGTGCCAACCTCACCCATGGTCATCGGATCTATCCGCCTGGCAGTGAGGGACTACAGTCTACCTCGGATTGACCTGTTCACTGAAGTGAATGGTCTGGGGAGAATGACATCCTTCTGCGACGACACTATTGAGATCTGCTCTTATGGGAACATACAGAACACCGGCTCCATCAAGGTCCACTCTGGAGTCTGGCTGGTGTATGGTGACCCAGGGTTTGGGGGTCTCTTATCGGTGTTGGAGGCGGGCGAGTACCCCTGTCCAGAGGCCTGGGCATTCCCTCAGCCCTTCATCGGATCGCTGAAAACACTCAAAATGGGTGGGATAAAGGTGGAGCATCCTAATGAAGTAAAGgCTCTGGTGTACGAGAGGCCGTGCTTCGAGGGCGAGTGTGTGGAGATTGACGATGATGTGTACGActtcagagagggaggagaggaaaaagaggggcgggtggaggaggtggtggaggaggaggcagaaGGTAATCCAGTCAGAAGGAAGACTTTGTGTTCTGTGGGATCCATCAAGATCATTCGTGGACTCTGGGTTGGCTATGATGAACCAGAGTTTGAAGGTCACCAGTATCTCCTGGAGGAGGGGGAGTATCCTGACTGGAGGGAGTGGGGAGGCTACGGAGACCAGCTCCTGTCACTTCGCCCTGTACGCACTGATGTCCTGTCTCCCCATGTGAAGTTGTTCAGTGAGAGGGACTTTGGGGAGAGAGGGGTCAACATGGACCTGCTAGGGCCTGTCATTAACATGGAGGACACAGGCTTCGGCTCGAAGACACAGTCCATcaatgtccagggtggagtGTGGGTTGCCTTTGAGAACCCTGGGTTCTCCGGAGAACTTTACATTCTAGAGAAAGGCCTCTACGGAAGCCCAGAGGACTGGGGAGGACCGAACCTCAAGATATCCTCACTGCAGCCAGTCTTCCAGGATAACCTGGGTGGATCAAGCAAGTTCAGGCTCCAGCTGTTCTCAAAGCCTGGGTTCCAGGGCAGAGTGGTGGTACTGGAGGACAGTGTGGTAGCCCTGGAGGAAGACTTCTTCCCTGGCTCCTGTAGAGTACTGGCTGGGAGCTGGGTGGCGTATGAAGGATCCCAGTTCACAGAGCACATGTATGTCCTGGAGGAGGGAGACTACCCCAATACCAAGTCCATGGGCTGTCTGGGTCCTGACTCTACCATCCGCTCCATACAGACCATCAGCCATGAGTTCTCCCTCCCGTCCATAACGTTGTTCAGTAAGGTTGGCTGTAGAGGCCGTAGGGTGGTGCTGACGGAAGGGGTGGTGAACCTGCAGCTGGCTGGGGTGGACGGACGCATACGCTCCCTGGTTATCGACGGAGGAATGTGGGTGCTGTATGAGGGCTGTCATCACCGCGGCCGTCAGATCCTGCTACCGCCCAGCAAACTGGGTGATTGGTGCAAGTTCAGTAGCTGGCCGCGAATCGGATCCCTGCGACCACTATTGCAGAAGCAGGTGTACTTCCGTCTGCGAAGCAGGGAGACGGGCTACGTGATGTCCCTGTCAGGGCCTCTGGATGACATCAAGCTGTTGCGGGTCCAGGCCCTGGAGGAGACTGGGGGAGTGGACCAGGTCTGGCTCTTCCATGACGGAGTCCTACGCTGCAAGCTGGTGGAGGACTGTTGCCTGCAGATCACGGGGAGCGTTGTCATGGCGGGCAGCAGGCTGAGTGTGTCTCCTCCGGAGCCAGGGAAAGACAACCAGCTGTGGAACATTACCCCAGACGGCCTGGTCCGATGCCACCTCAAACCTGATCTGGTGCTTGAGGTTAAAGGTGGACAAAGTTATGACAAAACTCAAGTGATTCTCAACACATTTGATGAGAGAAAACACAACCAAAGATGGTCTTTGGAGATCCTGTAATATAGTGTCAATAGGCCTGGCCCTTCTACAGCAGCTCTGCCGTGGGCTTCAGAACTCTCTGGTGCAGCTCTGTCGTGGGCCTCAGAGCTCTCTGGTGCAGCTAAGCCAAGTGTTTAAGAGCTTTCTTGCATCAGAAGGCCATGGGACTCAAAGCTCTGTGATGCAGTTCCACCGTGGGACCCACACTCTTGTTTCTTTATGCAGTTCCTACAAGGGCCTTAGTGCTCTGTGATTTTAGTCTGCAGTGGGCCTCGAGATATTCTGAAACATGTGTTGAGCTTGTGCGCATCCATACTAGGTTGTCTTTGTAAAACACAACTATAAACTAGTAAACTACACATTTCCATGTCACTGCAACGAGAAAGAGACCAAACAACATGTGGCTACAGAACTATCTATGGAacaagggcggcaggtagcctagcggttaagagcattgggcctgtaactgaaaggttgctgattCGAATAcccaagccgactaggtgaaaaatgttgaggtgcccttgagcaaggcactaattcctctggataagagcatctgatgAATAACTTAAAAGTACATTTAAGGAGCACTACAATATACAGTCAGGACTTGAATGATGCTTTACAAATTCCACAATTAATTATTTCATTGACCATACCAAAGAAAAACGGTAGTGgaatatgtgtgtgtctctactaTATTCATAGCATTTACAATGAGTTAAGTGTGCTTCACCAGTCAACTACTGAAATGTATATGTTTTCACACAAGGGTTAGTCTATGAAGTCACACATTCTTAATGTCATAGATGAACACTCCTTGAATTCTCCAAAGGTACGTTTTGAGTAGATATGTTGGTAACacttgacacccagcgtcataacACATTATGACCCCATAAAACATACCATGGtggttattttatggctggttatgacacctacataagagtgtcaaaacacATAAAACCTACCATGGTAGTTATTTTATGGAAGATTATGACATGTATATAAGAGTGTCAAATAACCCAAAaactaccacacaaggcaaaacattccattacaccataccCTACTTGTCAACAGTGTGTTTGTTATTCATTTTTAAATTGACCATATAcaattatcattgtaattgcaCACACATTGATGTTAGACATGCgcctaccccaatgctctgtttctgatgactgggataaatgcaggagcagattttaggagcaggacaagacaccctctttgtgactgatgactgacataagGGCATGTGCGTGATAGGCCTATATGGCTTAGATGATTATGATGGTAATAATGCTTCTTAACAGTgtcataaaatgtattttcttagtccaagtaaagtgacataggatggtcataatgcattTGGACTGtttcataaagtgtattttcttagtccaagtaaagtgacataggatggtcataatgcattTGGACTGtttcataaagtgtattttcttagtccaagtaaagtgacataggatggtcataatgcattTGGACTGtttcataaagtgtattttcttagtccaagtaaagtgacataggatggtcataatgcattTGGACTGtttcataaagtgtattttcttagtccaagtaaagtgacataggatggtcataatgcattTGGACTGtttcataaagtgtattttcttagtccaagtaaagtgacataggatggtcataatgctttaTGAAAAGTTATTTCAAATATTATGAAAAAAATTAATGTAAAGTATTcataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869703 lncRNA upstream 93489 49963673 ~ 49994777 (+) True G1634198
TU1869696 lncRNA upstream 113334 49956626 ~ 49974932 (+) True G1634192
TU1869695 lncRNA upstream 132207 49955830 ~ 49956059 (+) True G1634191
TU1869692 lncRNA upstream 140076 49947978 ~ 49948190 (+) True G1634188
TU1869688 lncRNA upstream 145654 49942277 ~ 49942612 (+) True G1634184
TU1869788 lncRNA downstream 2546 50147195 ~ 50148050 (+) True G1634275
TU1869814 lncRNA downstream 3755 50148404 ~ 50148668 (+) True G1634301
TU1869819 lncRNA downstream 6928 50151577 ~ 50151873 (+) True G1634306
TU1869821 lncRNA downstream 9441 50154090 ~ 50154328 (+) True G1634308
TU1869824 lncRNA downstream 12123 50156772 ~ 50157063 (+) True G1634311
XM_021574636.2 mRNA upstream 19884 50037765 ~ 50068382 (+) False zgc:113142
XM_021574638.2 mRNA upstream 19884 50037765 ~ 50068382 (+) False zgc:113142
XM_036955012.1 mRNA upstream 19884 50037765 ~ 50068382 (+) False zgc:113142
XM_036955013.1 mRNA upstream 19884 50037765 ~ 50068382 (+) False zgc:113142
XM_036955014.1 mRNA upstream 19884 50039988 ~ 50068382 (+) True zgc:113142
XR_005037768.1 mRNA downstream 18996 50163645 ~ 50168749 (+) False LOC110498072
XM_036955015.1 mRNA downstream 18997 50163646 ~ 50168749 (+) False LOC110498072
XR_005037766.1 mRNA downstream 18998 50163647 ~ 50168749 (+) False LOC110498072
XR_005037765.1 mRNA downstream 18999 50163648 ~ 50168749 (+) False LOC110498072
XR_005037767.1 mRNA downstream 19000 50163649 ~ 50168749 (+) False LOC110498072
TU1868248 other upstream 909864 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 920713 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1387698 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1410111 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 1508610 48578778 ~ 48579656 (+) False LOC110498372
TU1869832 other downstream 19190 50163839 ~ 50167386 (+) False LOC110498072
TU1869885 other downstream 98970 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 462737 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2430284 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2430307 52574956 ~ 52575617 (+) False hnrnpua

Expression Profile