RNA id: XR_005037765.1


Basic Information

Item Value
RNA id XR_005037765.1
length 2882
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110498072
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50163645 ~ 50168749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCCgttgaaatatctgtctcattgttctaccTGTGTTATCGTTTTTACACTCTGGAAGGACAAAAATGTAGCTAGCTCTTGCACTCATGCTGCTTCCTCATCTGGCAAACACCATTTGACAGCTAATACTCAAGCAATTGGAGTGCGGTTTACTCATCCGATGTTGAGCTTCCAGAAGCTAAACAAACATGGTAGAACCCCCTGTCGCCGCATAAACTGAAGGTTGCTGTATATTTGGGTTGATTTGACACACAGAAAGCATGCTGAGCTTGTCAATAAGAGACGTGCCCCCAAAGGTCCACTGGATCCCTTTTGCTGTGAAGGACAACTTCTACACAGAGAACATCAAGAACACTTGTGCCTCAAATGCTGAAAGTGCAGGCAGTACTGACCGTGCTTTTGAACCTGTCCGGAACACCTGGAGCTACGCCGCCCCTTACAGAGAGCAGACTGGGGCTGACCCTGACTCTGACTGGGTAATCACGGAAGGCAGCTCTGGAGGAAGTGCTGCAGCTATGGCCTCTCTCACCAGCTTCCTCTCTTTGTGGTCGGATACAGGTGGCTCCACCCGTAACCCAGGGGCCCTGTGTGACATAGTGGCCCTGAAGCCAACCTACGGCCTGGTGTCCAGACACGGCCTCATCCGCCTGGTCAACTCGATGGAGGTCCCAGGCATCATGACTCGGGAGTGTTCATGACTCAGCCACCGTCCTGGGTCAGGCATGTTATATGGCCATCCCATGGGGCCTGTATTTTTTTCCTGACCAGGTATTCTCCAAGGCCATGATGTCAGACTCTACTACCATAACCCTTCCACACTGACAGACCTACCGGGTGACTTTGATGTCAGGAACATCTGTGTGGGCATTCCCAAGGAATTATGAGCACTACTTTGTGATGACCCAGCAGGTGCGTTGTCTGATAGCAGAGGACTTCAAGCAAGTGTCCAGCTCGGGTGTTGACGTGCTGCTCATGCCCACCACACTGAGTGACGCCATGCGCAACACGGACTTCATGCAGGAAGACAACCCCACACGTAGTGCCCAGGAGGACATCTTCACCCAGCAACATGGCAGGAAATAATATGCTCATCATTTAACTCTCCCTTTTCAAAGGAATTGGGTTGGAATTCCTATTTCGGTCAACCCTTTGATTACAAATCCAGATGAAGGTCTATCTGAAACAAATCATCTCCATCAGGGAAGCTGATAACTTTGCGGGCAGTTAAAGTTTAACCCATCTTTTATCCCCCTCACAGTCTGGCCTTCAAACAACCTTACCCTGccaacccctctccctctcgACTTTCTCACATTTACCCCTCCAACTCTCATTTTCTGCTCCAAGACTCCTTGCTGTTTCTGTGACAACAGCGTTATCGAGCATACCTTCCCATTGGCCTGCAGCTAATAGGCCCCACCCTCCAGGACAGGACACTGCTGACAGTAGCCCAGTGGATAGAGCAGAAGGTGGGCTTTACCCCTATCCATTACCATGGAGATGCCGTACAGGGGGAGCGAGGTGCGGAGGTCCATAAGCGAGAGCAGACCTCAGTTGTATGAGGTGAAACTAATGAATACAGAGCTACTCAGATGAGTGCCATTATCATGGTCATGTAAAGGACATACTCAAAGATGTATGGCCTTTTCTGGATTTGTTCTGAAGTTACTGACTTCCATTAAAGACACTTTATTACTTGCTGTTTGTCTGGCGGTTCCAAGTATGAGTTAGAATGAATGACTTAAAGATTAGGTCACGTATCCAGAAGACAAGTATTGTGAACCTGGGCGTTGAACATCAGTGGTAAGCACTGGCGTAGCAtgcagctccccccccccccccccaaaaaaaaaaattaaaatgtgtttttgtcgAGCCACCCCAGAAAGCATATGAACACATCATAAGCCATGAAGGAAATGTTTAGAATTACAGGACATtacctttaaaactgcaaaatgttccctcagcctcatggcaaaatgtgtaaaatagcaggaaattagctcATAGCTCATAGATTCTTGAAAGTCGGGTCAATCCTTGTCCGGCAGGGAAATTTAttcatttaatttttttacattttgttgcattatttgagcttaaaatgtacattttagagGAATATTATTTATTTCCATGTCGACTCTATGCATAGATCCCGATTTTCAAACtatccaaaaaagtgtaaaagaaAGATTTCAACAAACAATATTTGAATCACAATGGTCACAACAATTTCGCCTCTAAACCGCATGCGGCGTGGACCTCCTCCAAGACTGTTGCGCAGAAGAAGTGCCAGGCCGCGCAGAGACACGAGATTAAACTTCACTGAGTTCGCCCCATTAGATTGCACCATTTATTGTGATCGAATAAACATATATGCCCCTTTTCAATGCAACAAAACAAATCTAACTTTGCAAGAGTctgtgattttgttgtaggcagagccAGAGTGCCGCGGAATAGCATTCTATTGACAGTAGCAGTGAAcggtctttcaatcacccataaGTGAATGTGCTGTTCAGGTCAGCGAGCATAGCGTGTGCACGTTTGTTGATATTCTTTGTTAGTTAGCAAGCTATTAGCCCAGTTTTAAATATTGGTCAGCAACAGGGATTTACTGCTTCCTAGCACAAAACGTGTAGGCTACATTTCAAGCTGTCTTTGAAAAGCTAGTTGGGAAAAAAGCTTGTTTGTCTTCATTAaagaggcagtgttgtattttgagagaggCTTGAATAAgaaaaattacatttttgtcaactaggtaaaaaaaaaaaaactgtcagatCTTTGTCTAACGTCAACTCTGTCAAAGTGCTGATATAATGGTTGTTTTTATTGGGGATTTTCAAATAAAGCATTTTATATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869824 lncRNA upstream 6585 50156772 ~ 50157063 (+) True G1634311
TU1869821 lncRNA upstream 9320 50154090 ~ 50154328 (+) True G1634308
TU1869819 lncRNA upstream 11775 50151577 ~ 50151873 (+) True G1634306
TU1869814 lncRNA upstream 14980 50148404 ~ 50148668 (+) True G1634301
TU1869788 lncRNA upstream 15598 50147195 ~ 50148050 (+) True G1634275
TU1869837 lncRNA downstream 8513 50177262 ~ 50178054 (+) True G1634322
TU1869839 lncRNA downstream 10514 50179263 ~ 50179485 (+) True G1634324
TU1869844 lncRNA downstream 16166 50184915 ~ 50185148 (+) True G1634329
TU1869848 lncRNA downstream 21076 50189825 ~ 50190052 (+) True G1634333
TU1869850 lncRNA downstream 21930 50190679 ~ 50192189 (+) False G1634334
XM_021574639.2 mRNA upstream 18999 50088266 ~ 50144649 (+) False LOC110498069
XM_021574640.2 mRNA upstream 18999 50101025 ~ 50144649 (+) True LOC110498069
XM_036955012.1 mRNA upstream 95266 50037765 ~ 50068382 (+) False zgc:113142
XM_036955016.1 mRNA downstream 34320 50203069 ~ 50219807 (+) False iars2
XM_036955017.1 mRNA downstream 34328 50203077 ~ 50219556 (+) True iars2
XM_036955018.1 mRNA downstream 74748 50243497 ~ 50265945 (+) False LOC110498078
XM_036955019.1 mRNA downstream 103295 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA downstream 134194 50302943 ~ 50335206 (+) False LOC110498377
TU1868248 other upstream 985246 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 996095 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1463080 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1485493 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 1583992 48578778 ~ 48579656 (+) False LOC110498372
TU1869885 other downstream 74870 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 438637 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2406184 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2406207 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2406207 52574956 ~ 52576154 (+) True hnrnpua

Expression Profile