RNA id: TU1869832


Basic Information

Item Value
RNA id TU1869832
length 1326
RNA type TUCP
GC content 0.52
exon number 6
gene id LOC110498072
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50163645 ~ 50168749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTAGAACCCCCTGTCGCCGCATAAACTGAAGGTTGCTGTATATTTGGGTTGATTTGACACACAGAAAGCATGCTGAGCTTGTCAATAAGAGACGTGCCCCCAAAGGTCCACTGGATCCCTTTTGCTGTGAAGGACAACTTCTACACAGAGAACATCAAGAACACTTGTGCCTCAAATGCTGAAAGTGCAGGCAGTACTGACCGTGCTTTTGAACCTGTCCGGAACACCTGGAGCTACGCCGCCCCTTACAGAGAGCAGACTGGGGCTGACCCTGACTCTGACTGGGTAATCACGGAAGGCAGCTCTGGAGGAAGTGCTGCAGCTATGGCCTCTCTCACCAGCTTCCTGTGAGTCTGCAGACACAGGTGGCTCCACCCGTAACCCAGGGGCCCTGTGTGACATAGTGGCCCTGAAGCCAACCTACGGCCTGGTGTCCAGACACGGCCTCATCCGCCTGGTCAACTCGATGGAGGTCCCAGGCATCATGACTCGGGAGTGTTCATGACTCAGCCACCGTCCTGGGTCAGGCATGTTATATGGCCATCCCATGGGGCCTGTATTTTTTTCCTGACCAGGTATTCTCCAAGGCCATGATGTCAGACTCTACTACCATAACCCTTCCACACTGACAGACCTACCGGGTGACTTTGATGTCAGGAACATCTGTGTGGGCATTCCCAAGGAATTATGAGCACTACTTTGTGATGACCCAGCAGGTGCGTTGTCTGATAGCAGAGGACTTCAAGCAAGTGTCCAGCTCGGGTGTTGACGTGCTGCTCATGCCCACCACACTGAGTGACGCCATGCGCAACACGGACTTCATGCAGGAAGACAACCCCACACGTAGTGCCCAGGAGGACATCTTCACCCAGCAACATGGCAGGAAATAATATGCTCATCATTTAACTCTCCCTTTTCAAAGGAATTGGGTTGGAATTCCTATTTCGGTCAACCCTTTGATTACAAATCCAGATGAAGGTCTATCTGAAACAAATCATCTCCATCAGGGAAGCTGATAACTTTGCGGGCAGTTAAAGTTTAACCCATCTTTTATCCCCCTCACAGTCTGGCCTTCAAACAACCTTACCCTGccaacccctctccctctcgACTTTCTCACATTTACCCCTCCAACTCTCATTTTCTGCTCCAAGACTCCTTGCTGTTTCTGTGACAACAGCGTTATCGAGCATACCTTCCCATTGGCCTGCAGCTAATAGGCCCCACCCTCCAGGACAGGACACTGCTGACAGTAGCCCAGTGGATAGAGCAGAAGGTGGGCTTTACCCCTATCCATTACCATGGAGATGCCGTACAGGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869824 lncRNA upstream 6776 50156772 ~ 50157063 (+) True G1634311
TU1869821 lncRNA upstream 9511 50154090 ~ 50154328 (+) True G1634308
TU1869819 lncRNA upstream 11966 50151577 ~ 50151873 (+) True G1634306
TU1869814 lncRNA upstream 15171 50148404 ~ 50148668 (+) True G1634301
TU1869788 lncRNA upstream 15789 50147195 ~ 50148050 (+) True G1634275
TU1869829 lncRNA downstream 626 50168012 ~ 50168721 (+) True LOC110498072
TU1869837 lncRNA downstream 9876 50177262 ~ 50178054 (+) True G1634322
TU1869839 lncRNA downstream 11877 50179263 ~ 50179485 (+) True G1634324
TU1869844 lncRNA downstream 17529 50184915 ~ 50185148 (+) True G1634329
TU1869848 lncRNA downstream 22439 50189825 ~ 50190052 (+) True G1634333
XM_021574639.2 mRNA upstream 19190 50088266 ~ 50144649 (+) False LOC110498069
XM_021574640.2 mRNA upstream 19190 50101025 ~ 50144649 (+) True LOC110498069
XM_021574636.2 mRNA upstream 95457 50037765 ~ 50068382 (+) False zgc:113142
XM_021574638.2 mRNA upstream 95457 50037765 ~ 50068382 (+) False zgc:113142
XM_036955012.1 mRNA upstream 95457 50037765 ~ 50068382 (+) False zgc:113142
XM_036955016.1 mRNA downstream 35683 50203069 ~ 50219807 (+) False iars2
XM_036955017.1 mRNA downstream 35691 50203077 ~ 50219556 (+) True iars2
XM_036955018.1 mRNA downstream 76111 50243497 ~ 50265945 (+) False LOC110498078
XM_036955019.1 mRNA downstream 104658 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA downstream 135557 50302943 ~ 50335206 (+) False LOC110498377
TU1868248 other upstream 985437 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 996286 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1463271 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1485684 48589625 ~ 48678155 (+) True LOC110498046
TU1867715 other upstream 1584183 48578778 ~ 48579656 (+) False LOC110498372
TU1869885 other downstream 76233 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 440000 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2407547 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2407570 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2407570 52574956 ~ 52576154 (+) True hnrnpua

Expression Profile