RNA id: TCONS_00048937


Basic Information

Item Value
RNA id TCONS_00048937
length 703
RNA type nonsense_mediated_decay
GC content 0.49
exon number 5
gene id XLOC_024864
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 35957603 ~ 35963241 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACATGACCTCTTATAGAGACACAAGTGAACTTACACTTTCAACTTCAGCAGATTATCCGATGTCTGTGTGCACAGAGATCTAATTTTGCCCAACTTCCTGAGGAAGTGCAGCACTTTACCTTTCACCGCATGGAACTAATGTAATGTATTTCCTTACAGAGAGCTAAAATTATCAGATCTTCATGGAGGAAGAGGAAAAACCACCCAACATCACTGCTAATCACACGGTTTCATCAGCTCCTGAGCATTTATCACCCCACCAGGAAACGTTACAGGGTAATGGAGAGTAGGATGATCTGTGTTTTGGCGCCTCCTGTCTGACCACGGCAGAACTGCAGCAGCACTGGAGAGCCGTCAAGCAGGAGTTCAGGAGCGTTAAACTGCTGTTCGACATCCCCAGCGCCAGAATCATCTCACAAACCATCTCCAAACATGTGGTGTACCAGGTTGTGGTTATTCGCTCGGGTAGTTACGACTGTGAGCGCGTGGCTATCGAGCGCCGCTATTCAGACTTCCTCCACCTCCATCAGGAGCTCCTGTCCGACTTCAGCGAGGAACTTGAGGACGTTGTGTTTCCCAAAAAGAAGATGACCCGAAACTTCTCTGAGGAGATCATCGCTGAGCGTCGCGTAGCTCTGAGAGACTATCTGACCCAGCTCTACTCCCTCCGCTTTGTCAGGAAATCCCAAGCGTTTCAATCCT

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-100806-1 Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in early endosome membrane. Orthologous to human SNX20 (sorting nexin 20).

Ensembl:

ensembl_id ENSDART00000157334

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049442 lncRNA downstream 45957 35905691 ~ 35912197 (-) True XLOC_024862
TCONS_00049441 lncRNA downstream 45958 35905691 ~ 35912196 (-) False XLOC_024862
TCONS_00049440 lncRNA downstream 45959 35905691 ~ 35912195 (-) False XLOC_024862
TCONS_00049435 lncRNA downstream 46955 35905691 ~ 35911199 (-) False XLOC_024862
TCONS_00049437 lncRNA downstream 46955 35905691 ~ 35911199 (-) False XLOC_024862
TCONS_00049443 lncRNA upstream 176638 36139843 ~ 36142321 (-) False XLOC_024868
TCONS_00049444 lncRNA upstream 176638 36139843 ~ 36144733 (-) False XLOC_024868
TCONS_00049445 lncRNA upstream 176638 36139843 ~ 36144932 (-) False XLOC_024868
TCONS_00049446 lncRNA upstream 176638 36139843 ~ 36150447 (-) False XLOC_024868
TCONS_00049447 lncRNA upstream 176638 36139843 ~ 36152385 (-) True XLOC_024868
TCONS_00048933 mRNA downstream 1810 35952036 ~ 35956344 (-) True XLOC_024863
TCONS_00048932 mRNA downstream 293337 35603107 ~ 35664817 (-) True XLOC_024858
TCONS_00048931 mRNA downstream 358267 35575231 ~ 35599887 (-) True XLOC_024857
TCONS_00048930 mRNA downstream 367131 35565590 ~ 35591023 (-) False XLOC_024857
TCONS_00048929 mRNA downstream 367132 35565590 ~ 35591022 (-) False XLOC_024857
TCONS_00048938 mRNA upstream 23140 35986345 ~ 35996141 (-) True XLOC_024865
TCONS_00048939 mRNA upstream 47610 36010815 ~ 36020344 (-) False XLOC_024866
TCONS_00048940 mRNA upstream 48265 36011470 ~ 36044583 (-) False XLOC_024866
TCONS_00048941 mRNA upstream 59180 36022385 ~ 36044294 (-) True XLOC_024866
TCONS_00048943 mRNA upstream 234528 36197733 ~ 36217563 (-) False XLOC_024870
TCONS_00048891 other downstream 863042 35091912 ~ 35095112 (-) False XLOC_024824
TCONS_00048871 other downstream 1702881 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048855 other downstream 3937159 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048850 other downstream 4050570 31890273 ~ 31907584 (-) False XLOC_024787
TCONS_00048845 other downstream 4279961 31678079 ~ 31678193 (-) True XLOC_024783
TCONS_00048942 other upstream 95315 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048949 other upstream 291124 36254329 ~ 36263112 (-) False XLOC_024872
TCONS_00048967 other upstream 997519 36960724 ~ 36975214 (-) False XLOC_024886
TCONS_00048972 other upstream 1181763 37144968 ~ 37145083 (-) True XLOC_024891

Expression Profile

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