RNA id: XM_036955017.1


Basic Information

Item Value
RNA id XM_036955017.1
length 4135
RNA type mRNA
GC content 0.52
exon number 21
gene id iars2
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50203069 ~ 50219807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaattgtaggggtgcccatggggctggggatcagaaatgtcccgtgcgagagaggcaggttgaggtttccagtgATAGAGTAGTACAGAAGTtgtcgtatgctgaggcagtgaagaaagtagaacAAGATTTGGTTAAGGGGGAGGGatctgagaggagtggtgtgagtagtagatctgtaccagtacagagggatggaccaacaagtgatatatgtttcagtaagattggacTTTTGGCATTTATAgtaatggttatcaactgtacagcAGGGATGGAACGTAAGTCGCAGAAAATAGAGTTTGTGGTTGCAGCTGCggagaggtatgtgtgtgtgcgagacACAGGGTGTGTCAAGTGGTtgtgtcccatcctttcaggctGTTGGCCTGAAGTAGGACTACATgcatttaaatagtggagtatggCATTTATTATTCTTTTTGTTTgtgtagtgttagatggtagggtatttttttagattttttttagattaaaaaaacacaaatttaagtataagggagttatactccagtttagtaggtggcggtaatgcaacatttattggatgccaaccgccgttgAACCTAATCGAAGAAAACAACTAATTTGGCCTTTCACAGTTTCCGTAGTAGTGTGTTACGTCCAGTACTTCCGGAAAACAAGAAAAAAACGATCCAATGCTCTAAAGGGTCGCAATCAGATCGATCACAACAACAAACCTGTTTTAGAATTTTGGTAGGTAGAATAGTACGAAGTGTTTGCCTCTCCATGCTGCTGTGCCGCATTTCAGCAGTGAGCCAGAGCGTAGCGAGATGGGGAACGAGTGTTCGGAGAGGCGCCCTTCTCCACCCCGCACTCTCCTTCAACACCAGCCGTTGTCAAAATGTCAGCTCCACCGAAGGTACGGTTCACCCTGCAGCCGCCCAGGGTGCCGGGCCGTACCGCGACAGTGTGTTGCTTCCCCGTACTGAATTCCCCATGAAACTAACCGGACAGAATCTCATAGACCGGGAGGTACAGATACAACAGGAGTGTGGCTTTGCAGAACTCTActcatggcagagagagaggaaggccaAGAAGGAATACTGTCTCCACGATGGCCCCCCATACGCCAACGGGGACCCACATGTGGGACATGCCCTCAATAAGATCCTCAAAGACATCCAGAACCGCTTTGAGATGCTGAGGGGGAAACAGGTTCACTATGTCCCAGGCTGGGACTGCCATGGGCTGCCCATTGAGCTGAAGGCACTGGGAGAGCTGGGAACCAGTGGACTGAGCCCTCTGCAGATAAGACAGAAAGCTCGGGAGTTTGCGGAGGGGGCGATCGCTCGTCAGCGTGCTGCCTTCCAGCGCTGGGGTGTGATGGCGGACTGGGATAAGTGCTACTACACCTTTGATGGGACTTATGAGGCAGCTCAGCTTAAGGTCTTCCAGGACATGCACAGCAAGGGTCTGATCTACCAGGACTACAAGCCAGTtttctggtctccctcctccaggacagctCTTGCGGAGGCAGAGTTGGAGTATAACCCACAGCACGTGAGCAAAGCAATCTACGCCACCTTTGCCCTGGCCACCCTACCCCCTAAGATGGCGGAAGCTGTAGGGGAGTTGGGCAGCATTTCTGTGTTGGTGTGGACCACCCAACCATGGACCATCCCAGCCAACCAGGCTGTCTGCTTTATGCCCAATGCCCAGTACTCAGTAGTGAAGAGGAGAGACAGCTCACAGCTCCTCCTAGTGGCCACTGAGCGCGTTTCCAGCCTGGCAACACTGCTGAGCACAGAGCTGGAGAGTGTGGGCACTTTCACAGGTACAGAACTTGAGGGAGGAGTCTGCCAGCATCCCACCATTCCCAAGAAGGAGGTTCCATTGCTTCCAGCTAATTTTGTAACCATGGGCAAAGGAACGGGATTGGTTCACACAGCTCCTGCCCATGGGATGGAGGACTACAGTGTGGCCTCCCACTTTAAACTATCAGTGGAGTGTATCGTGGATGAGGAAGGCAGGTTCACTGAGCTggctgggcctgagctacagagTCTGTCTGTGATGGGGGAGGGCAATGATACAGTGATCTCCATGCTGAAGGCTGTCGGTTCTCTAGTGAAGGAGGAGGAGTGTGTCCACAGTTACCCATACGACTGGAGGAGTAAAGAGCCTGTAGTCATCAGACCCAGCAAACAGTGGTTCATTGACATCGCCAGCCTCAAAGACAAGGCCAAGGAAGTGCTGGCTAAGGTGCGTGTGATCCCAGAATCGGCGAGGGGCAGTCTGTTGGCCCACCTGGACCGAAGACCGTACTGGTGTATCTCACGCCAGAGGAGCTGGGGTGTGCCCATACCTGTGTTCTACCACAAGGAGACAGGAGAGCCTCTCATTAACAAGCACACTGTATCCCATGTGACCCAGCTGTTCTCAGAGAAGGGCAGTGACTGCTGGTGGGAGCTGCCCCTGGAATCTCTACTGCCACCAGAGGTGCTCAAGAAGagtaAAGCAGGAGAGGTAACAGACTACGAGCGTGGAGATGATGTGTTGGACATCTGGTTTGACAGTGGAACCTCCTGGGCTGCTGTTCTTGGAGACTCGAGGGCTGATGTGTATGTGGAGGGAAAGGACCAGATAGGTGGTTGGTTCCAGTCCTCTCTGCTCACCAGTGTTGCCGTGCAGAAAAGGGCTCCCTACAAggctctGATGATACATGACTTTGTGATAagcgagaaaggagagaagatgtCCAAGTCTTTAGGCAACATAGTAGACCCCGATACAGTCATCCACGGGGGGGAGGACCCCAGTGTGTCTCCTGCCTATGGAGTGGATGTGTTGCGTTGGTGGGTGGCAGAGTCCAACGTCTTCTCTGAGGTCCAGATCGGCCCCAACGTGCTCAACTCAGCCAGAGACAGCATCAATAAGTTGAGGAATACCCTGAAGTTCTTGCTAGGGAATCTGCAGGGTTTTGACCCTCGTACTCAGGCAGTGGACCCTAAAGAAATGCACTACATCGACCAGTACCTACTGCACCTTCTACGGAACTACAGTATGAAGATGACAGATGCCTACAATGATTTTGGTGCGGGCAGGGCCATCCGCCTGCTCCAAGCCTTCATCACCAGAGACCTCTCCAAGTTCTACTTCAGCATCATCAAGGACAGgctgTACTGTGATCCTGAGGACTCGTTGGGTCGGCGGTCCTGTCAGACGGTTCtagaggagattctggacggagTGACGCGCTCCATCGCTCCTATCCTACCTCACCTGGCCGAAGAGGTCTATTTACACGCCCCAGGACATAACGAGGGGGAGACCCTGTTCAGGAGTGGCTGGATTAAGAGCAGTCCTGTGTGGCGTAGGCCGGGATTGGAGGAAGCCGTGGAGGGGGCATGCGCTATCAGGGATTCCTTCCTGTCCTCTATCCCAGGACGCAATGCAGCCGAGTATGAGCTGACCATAGAGATTGAGCCTGGCCTACTGTTTGAACTCATTGAGtctctccaAGACGAACctacttcctcttcctctcagcTAACAGAGCTGATGATGTCATCGCAGACAACCCTGACTAGCGCCCTGCCCAGAGACCTGCCCGCTGATGCCCTCATCAGCAATGGCAGTTTCCTCATCAACCTTGAGGGTGGGGTTATCCGTGAGGACAGTGCTTACCAAGTAGCGGCAGTGCCCACCTCCATGGCCCGGTGCCCGAGGTGCCGACGGTACACCTCAAGCTCTCCAGACTGCCCCTGCCCCCGCTGCCAGACCATCCTTACTAGGGCGCAGTGACACGTCCGCCCGCACCATCACAACTTGCAAATTGCCGTCTAACCCGGTCTGTCTGCTTGAACTGACTCCAGACAACCAGGGGTCAACCAAGAAAGACCCTGCTTAGCAACGCACTGAGAGGGGTAACAGCGACAGCCAGACTGTCTGAGTTACCTAAATGACATCTTTCTTCAGCTCTTCAGCTGACATTGACTCTGGCATGTTGCCGCGTGAGGATGGGATGCTTTACAAGACAGGCTTCGTAAAACAAAGCACACATTTTATTTTGATAGAGGGAATTGTCATAAGAGCTATGCAGTACTTTTGAGTTCATAAGACACCTCTCCCAAAGAAGGGCA

Function

GO: NA

KEGG:

id description
K01870 IARS, ileS; isoleucyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1869850 lncRNA upstream 10888 50190679 ~ 50192189 (+) False G1634334
TU1869851 lncRNA upstream 10888 50190679 ~ 50192189 (+) True G1634334
TU1869848 lncRNA upstream 13025 50189825 ~ 50190052 (+) True G1634333
TU1869844 lncRNA upstream 17929 50184915 ~ 50185148 (+) True G1634329
TU1869839 lncRNA upstream 23592 50179263 ~ 50179485 (+) True G1634324
TU1869882 lncRNA downstream 18934 50238490 ~ 50241199 (+) True G1634359
TU1870246 lncRNA downstream 48082 50267638 ~ 50268044 (+) True G1634681
TU1870258 lncRNA downstream 54047 50273603 ~ 50274264 (+) True G1634693
TU1870272 lncRNA downstream 69581 50289137 ~ 50289357 (+) True G1634705
TU1870279 lncRNA downstream 77279 50296835 ~ 50297054 (+) True G1634712
XR_005037768.1 mRNA upstream 34328 50163645 ~ 50168749 (+) False LOC110498072
XM_036955018.1 mRNA downstream 23941 50243497 ~ 50265945 (+) False LOC110498078
XM_036955019.1 mRNA downstream 52488 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA downstream 83387 50302943 ~ 50335206 (+) False LOC110498377
XM_021574653.2 mRNA downstream 138069 50357625 ~ 50378113 (+) False LOC110498080
XM_021574654.2 mRNA downstream 138615 50358171 ~ 50378113 (+) True LOC110498080
TU1869832 other upstream 35691 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 1024675 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1035524 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1502509 48699057 ~ 48700568 (+) True G1632650
TU1867942 other upstream 1524922 48589625 ~ 48678155 (+) True LOC110498046
TU1869885 other downstream 24063 50243619 ~ 50255252 (+) True LOC110498078
TU1870554 other downstream 387830 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2355377 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2355400 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2355400 52574956 ~ 52576154 (+) True hnrnpua

Expression Profile