RNA id: XM_036955020.1


Basic Information

Item Value
RNA id XM_036955020.1
length 5037
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110498377
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50272044 ~ 50335206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAACCAACATAACACTTAGCTGTGGTAGGTCATGATTCACTCCTCCTGCACCCTCCGTTTAGTTCACTTTAGTTTAGTCACCACCATATGGCAAAAATACTCTACAGCCTACTCCACCGTGACCGCGCTCcccactgactggctggctagcaTGGATGCCTTCCTGCTGTTAGCCATGACAAATACCTGCCCAGGCCCTCTGAGGGAGAGGGTTTACTACGGCACATTTAACTGGAGTCACTGACCTTGCCGTGGACTAGAGAGAGACATGATACTTTTCTGTAAAGTTGTCTGAGGGTGTGAGCGGAATGTCTCTGGATGAGGGGGCCCACGCTGGGTCCAGGGAGACGCCCATGTACGTGTATGAGTCGACGGTGCACTGTGCCAACGTGCTGCTGAGTCTGGAGGACCAGCGGCGGCTGAACATCCTGTGTGATGTGacagtggtggtggaggggacaGAGATCAGGGCCCACAGGGCCGTCCTGGCAGCCAGCAGCAGATACTTCCTACAGGTGCTGCTGGGACACACACAACCCGAGCAGGAGCCAATCATCAGCCTGTCTGACAAGGTCACAGCCAGGGGGTTTGCCCCGCTGCTACAGTTTGCCTACACAGCCAAACTGGTTCTGAGCAGAGAGAACATCCATGAGGTGATCCGCTGTGCTGACTTCCTGGGCGTTCACAACTTAGAAGACTCCTGCTTCCGCTTTCTACAGGCCCAGCTGCATAGCGACACGACTGATCACAACAATGGCCTTTGTCGCAAGGAGCTGCCGGCGCACACAGATGACCTCATCATGGAGGAGGATGGTGACGGTGGTGGTTCCACGTCATCCGAGACCCCCAGAGTGACGTCATCCTCTGCGACAAGGTGGCGACCCAATCACTCGACCCTCATGCCCCTCACCAGcagcctgacctctgaccccccaCAATGCCCcaaatacaggaagtaccagcagGCCTGCGCCAAGCACAACGGAGAGAACGAGGACGATGATAGCATCACCTCGGCCGCCTCGTCACTATGCCATGCCTCAGCCTCCCCAGGCCCCACAGAGACCAGCAGCACACACCAAGGGGCACAACCCCTTTCCCCCTCCAGAATCAAAGAGGAGCCCCGCTCCGGgggcgagggagaggagagcccCCCAGGACTGTCAGAGGATAGCCAGAATGTCCTGGAGATGGAGTTGGAGGGGAGGCCGAAGCCCTCAGCGCATCCCCCCAGCAGAGGTTCTCCATCTTGCCTGCACCTCCAGAGGGGCCTCCTGGATCTCAACAACCCAGCCAGCACCCTACCTTCCACTCCTCTCACCCAGCAGCTACTGACCAACAGACTCTCACTAGCCCataacagggacagagacagggaggcatCTCAGGGGGAGGGTGGAAGGGACCTCAGGGCGGTGTCTGCAGAGACAGTGGGATCTTCTGTTGGAGACATAGAGGGGGTAGTAGAGGACATGGCAATGAAGCCCCTTGTCTCAGACAGAGTCAGCAAACGGGAAGTAGAGTTGGATCGCCGCAGCAGCGTCATTTTCTCCTCCGGGGCATGTGACCATCTAGGAACACCGTCTCAATCCTACTCTGACCGGAAGTCTCTGGAAAAAGATCTGTTGGAGATCACCTCGAAATCCCTGTGGACAGGTGTTAGTCAGTCTCTCCCCTTCCACCAGACAtactctcccctaccctcctccaccacctcctccacggCCCTCCAGGAGCCCCTGCCGACTATGGCCTGCCGACCGCGGCCCACCACCAGCTGCCCTCTGCCCATAAAGATCTCCTCCTGCTCCCCTGCCTGCGAGCCACGCACACGCACCTCCAGCTCCTGCTCATCTTTCTCCTACCTGGAGGATGGTGGCAGTGGGGACTCGCCCTCCAGCCTGCCCCAGTTTGAGTTCTCCTCTTCCCCATGCTCTGTGTCGGGCTCAGGCTTGGCTCGCTGCCTGGTGGGGGAGCAGAGGAAGCACAGTGGGATGGTGATAGGGGAAGCTATATTCTCTCAGGGCAGCACCAAGATCAAGTGTGAACGGTCGTATGGGGCCAACTCCAGTGATGAATCCGGGTCCTTctcagagggagacagtgagtctGGCCCTGCCAGAGAGCCAGGTCCCGAAGTCAAACTTCCCTTCCCGGTGGATCAGATCACCAATCTTCCGCGTAATGACTTCCAGATCATGATAAAGATGCACAAACTGACCTCAGAGCAGCTGGAGTTCATCCACGACATCCGGCGGCGCAGTAAGAACCGCATCGCCGCCCAGCGCTGCCGCAAGAGAAAGCTGGACTGCATCCAGAACCTGGAGGTGGAGATACACAGACTGGTGCATGACAAGGACAAGCTGCTGAGTGAGAGAAACCAGCTGAAGGTGTGTATGGGTGAGCTATGGCAGAACCTCTCCTACCTGTCCCAGGCTGTGTCCCAGGAGGTGTGCAAGGAGGTACAGGGGAACCACGAGAAGATCCATGCTCTGCTCCCTACACACAGATCCAGAGATCCTACTGCCACCACCAACAGCATCTCCATCACGGCCAGCATCGACCTCACCTCCAACCCATGCTCCCCCACCTCAGAGGGCAGCCATGTCAAGTCCCCCTGCCCCTCTGAAAGCCCCATGGAGAGAGCCGTTGGCGCTGGGCAGGGGCGGCAGGGCAGTGGCGAGATAGATGTGTCTGACCTAGGGCAGGAGGACCCTGAGTCTTCCCTGGAGCCTGGAGCGTCTACGGGTGTGTGTAGCCCCACTGTTTCGGTGGATTTCTCTCAGGAGATGACTGAGAAATGTACAACAGGAGAACGGCCCAGACAGGACTGTATCTAGCTAGCAACGGAAAATGAATAGCTAGTAACAGGGTGTGTTTTTGTTATTATGACACACATCTCTACCTTGATATGTATAAAGTTTGAAGTACATTTGTTCTCTGTGTTTTTTTAAAGGATGACACTACAGTTGTCTTATCAGCAATACTTTTAAACAGGTATTTTGGAGTTATCAAACTCCATACAACATTGCTCTggcagctctctttctctctctatttctgtctctccctccctccctctctcccatcatgGGAGTATAAACTCAGGAATTCCTCTGAATGTGTAATAATGTTCAATAATGTCTCTGTAAAAAGCTATTAATTTCAAATTGTACATCTGAAGAGTTCTTCTATACAGCTGAGAGTAGAATGAACTCTCATATGCAAAGTTTCCTTCAGTTCTAATTTCTCACTTTCTTTTCCCTGCATTGTTTATGTACATTCCTCTTTTGCCTTTAACACACAGTAGCATCTATGGTGAAAGAAAGAAACATACTCTAGCTAAAGTGGGAAATAGAAGAAAAACAAAATTGTATTGCACCGTTCAGCACCTTCAAGAGGTAATCTAATTTACACTAACAATGCATTTACACTAGCAAATGCTTTGACATTGGCACTTAGAAATGAAAAACTCCCAAGCCAAGTACTTACTTAAATTATATTCAACAAATATAAATGGTGTCAAAGACTAACATTCTTATCTAAACCATATTGCTGTTTTAGGGGTAGAAATGTACTGTCCTACATGTggtgaaaatgtaatattttgttCTGAGGTTATTTCCCATTACATTTAAAGAATTGGGGTGGAAGTGGAAGTCACCACATGTTCCTGGTTTGATAATCCTTAAATATAAGAGTGCAATTTATCCTCTAAACTTGTCCAGTATTCCTAATGGTGTATTATcaagtgaaatgttgaatactaATTTAAAGAGATGCTTAGATAGTTGTTGGTTCATGAGAATGCCAAATGATTCCATTGTGGAAGATCGTTCTGTAGCATGTGTCATGGTTAGATTAGTGGTTTCTCTGTTTTCTCTAGGAACTTTCCAATGTCACATTCTGGGAATTTCAATTCATATCTTTTAGTTATTCTCAAAGTATAAAGTACCAATGACAGAGCTCCACAGAATGTACTGTTACTCTGAGTACACTGAATATACCGATCACCCCATTTTGATATTTTTGAatttgataaataaatataaacatgtTGAGTTATTTATTTTGACAATGTTTCTGAGGGGATGATTTGTTGGCACAAAATGTATGCCTGTAAATTTCCTAACATTGATTCTTGTGATTTTTAATGGTTGTTGTTTTTACTGACAATTTGGATGAAAGACAAGTCTTTTGTGTTTTATGATTCACAATGTCCTTATTTAGTACAAATTAAGCAAAACGTTTAAAGAGGTAAGTGTTTACAAAAGTCTGTGTAACATGTTTGTGTTTTTTAAGGATTTTTCCATGACAAGAGACTTTGCATCATTGGATTGATAAGTTTGGTTTTTTAACTGTTTTTAAAATGGAACACTAGGGTTCACACAAGATTTTAAACGTATGTTTGACAAATGCAGCTCCAAGTCTTGCCTTAGAGGTTTCAAAGGCCAAACTCACGTGAAAGGGAAGGTGTCAATTTAAAACCATACTGTGGAAAAATAACGTTCTGTCCATACCATGAAAGaaatgactgatttcagtacaacCACAATGTTTACTTGTTGGGGAAAAACGTAAATCACAAAATCTCTTAATGTGCATtaacaatgttatttttccaCGGTGCAGGTTTGATTGAATCCCAGCCTGAGTGTATGCAGAGGTTATGCCTCATGAACATTATGGACTCTTACACTTATCTACCTGCAAATCTGCATACCTCTCATTTTGGGTCAAGGACTGTACAGTTGGAATACGTTGTGTGTGGTTTTGTTTCTATGGTTATTATTGTATTTGTAGATTTTTGGTGAGATATTTTTTATGTGTAATTTGAGTAAACTGCAAGACGACAGATATCAGCTGTTTCACTTTTCCCTTTTTAGCTTATAATGTCCAAATTGCCTGAGTTTGTCATATTGTAAATATTATGTAACTGTTGTTTTTGTTAATTTGACATGCAAATGTTTTGGAAGAAAACTTTTTTGTCAAGACGCAATTTCTGTTTATGGATTAAAACAAATAGCATGCGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1870281 lncRNA upstream 2779 50299887 ~ 50300164 (+) True G1634714
TU1870280 lncRNA upstream 3556 50298940 ~ 50299387 (+) True G1634713
TU1870279 lncRNA upstream 5889 50296835 ~ 50297054 (+) True G1634712
TU1870272 lncRNA upstream 13586 50289137 ~ 50289357 (+) True G1634705
TU1870258 lncRNA upstream 28679 50273603 ~ 50274264 (+) True G1634693
TU1870306 lncRNA downstream 7097 50342303 ~ 50342646 (+) True G1634739
TU1870364 lncRNA downstream 16884 50352090 ~ 50352291 (+) True G1634794
TU1870373 lncRNA downstream 43018 50378224 ~ 50380198 (+) True G1634802
TU1870395 lncRNA downstream 60863 50396069 ~ 50396273 (+) True G1634821
TU1870402 lncRNA downstream 72115 50407321 ~ 50407527 (+) True G1634827
XM_036955018.1 mRNA upstream 36998 50243497 ~ 50265945 (+) False LOC110498078
XM_036955016.1 mRNA upstream 83136 50203069 ~ 50219807 (+) False iars2
XM_036955017.1 mRNA upstream 83387 50203077 ~ 50219556 (+) True iars2
XR_005037765.1 mRNA upstream 134194 50163648 ~ 50168749 (+) False LOC110498072
XM_021574653.2 mRNA downstream 22419 50357625 ~ 50378113 (+) False LOC110498080
XM_021574654.2 mRNA downstream 22965 50358171 ~ 50378113 (+) True LOC110498080
XR_002469773.2 mRNA downstream 101492 50436698 ~ 50437783 (+) True LOC110498081
LOC118941376 mRNA downstream 179716 50514922 ~ 50516672 (+) True LOC118941376
XM_021574657.2 mRNA downstream 185189 50520395 ~ 50526363 (+) False heatr4
TU1869885 other upstream 47691 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 135557 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 1124541 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1135390 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1602375 48699057 ~ 48700568 (+) True G1632650
TU1870554 other downstream 272180 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2239727 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2239750 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2239750 52574956 ~ 52576154 (+) True hnrnpua
TU1872895 other downstream 2415394 52750600 ~ 52755474 (+) True G1637065

Expression Profile