RNA id: XR_002469773.2


Basic Information

Item Value
RNA id XR_002469773.2
length 620
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110498081
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50436698 ~ 50437783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCAGCTGAGCTGGCACAGGTTAGAGTACCAAGACTGAGCAATCCCACAGCGTGAGCTGTGATTGCGAATAGTTTAGACTAAGCAAACCCACAGCGTGAGCTGTGATTGCGAATAGTTATTGAATTTCTGaccataccacgtggagcattggctacacggctggaaatggttcaactctgagactatcgaacCCTACCGAATAAGAGaaaatcttagatactaattactagtctgcagctagaaattatgtaaaCCTGGGATGTgaataccgacaaccgccgaaacatctatctaTGAGAATATTTCTGAATGGTACCCTGAAGTATCCATCTAACCATGAAAGAATTTGATCTTcagggaaacagaaagagagagagagacttggaattctccagcagacggaccggaCTCCAACAGAGAAGATCACGACACATGggtTCCACACTGAgatttgtgcagataaccaacactttacgacgtttggaatgagactgacgggagAGTTCCCCTCCGAATGGTCGCTGACTGGCTTCATGGCCTGTGTGCTGGATCTTTGTTGCTGTGGTGACATGGCCCTCCAGTCATTTCTGACACTGTGATTGGAGAAGGTCCAAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1870403 lncRNA upstream 27650 50408773 ~ 50409048 (+) True G1634828
TU1870402 lncRNA upstream 29171 50407321 ~ 50407527 (+) True G1634827
TU1870395 lncRNA upstream 40425 50396069 ~ 50396273 (+) True G1634821
TU1870373 lncRNA upstream 56500 50378224 ~ 50380198 (+) True G1634802
TU1870364 lncRNA upstream 84407 50352090 ~ 50352291 (+) True G1634794
TU1870535 lncRNA downstream 139887 50577670 ~ 50582425 (+) False G1634939
TU1870537 lncRNA downstream 139887 50577670 ~ 50579211 (+) True G1634939
TU1870591 lncRNA downstream 239939 50677722 ~ 50679060 (+) True LOC110498087
TU1870588 lncRNA downstream 243865 50681648 ~ 50683147 (+) True G1634979
TU1870593 lncRNA downstream 245744 50683527 ~ 50684117 (+) True G1634983
XM_021574653.2 mRNA upstream 58585 50357625 ~ 50378113 (+) False LOC110498080
XM_021574654.2 mRNA upstream 58585 50358171 ~ 50378113 (+) True LOC110498080
XM_036955019.1 mRNA upstream 101492 50272044 ~ 50335206 (+) False LOC110498377
XM_036955020.1 mRNA upstream 101492 50302943 ~ 50335206 (+) False LOC110498377
XM_036955018.1 mRNA upstream 170753 50243497 ~ 50265945 (+) False LOC110498078
LOC118941376 mRNA downstream 77139 50514922 ~ 50516672 (+) True LOC118941376
XM_021574657.2 mRNA downstream 82612 50520395 ~ 50526363 (+) False heatr4
XR_005037769.1 mRNA downstream 82686 50520469 ~ 50525999 (+) False heatr4
XM_036955024.1 mRNA downstream 82686 50520469 ~ 50526363 (+) True heatr4
XM_036955026.1 mRNA downstream 89158 50526941 ~ 50529343 (+) True LOC118936464
TU1869885 other upstream 181446 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 269312 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 1258296 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 1269145 49163954 ~ 49167553 (+) False zgc:193593
TU1868002 other upstream 1736130 48699057 ~ 48700568 (+) True G1632650
TU1870554 other downstream 169603 50607386 ~ 50610479 (+) True G1634948
TU1872309 other downstream 2137150 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 2137173 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 2137173 52574956 ~ 52576154 (+) True hnrnpua
TU1872895 other downstream 2312817 52750600 ~ 52755474 (+) True G1637065

Expression Profile