RNA id: XM_036955045.1


Basic Information

Item Value
RNA id XM_036955045.1
length 4940
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110498094
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52118468 ~ 52150151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACTGCAAAAGCTGTCCACCGATGGGAAAGCGTCAGATTGTGAATCTTCCGGATAGGTGTAAGGAAGATACCGGAAAACAAATATCAGTGTCAATGTTTGGTTCAGCACCCTGCATACTGGATACAAGACCCATTCAATTtcagtaGGAGGGCTGTTTATTGTAGGCGTGGCAAGGGGAGTGGCCGACCTTCATGCTGAGAGGTCACGGAGGAGGAGCCCCATGGATGAGGGTCAGTGCGAGAGGGCGGGACCAGTGGTGTCAGAGGGTCAGGAGGGCGTAGTGGACCTCCACTACAACCAATCGGACCCCTCGGAACCAATTCAGGTCTCCGCCCACCAAAACCAGAACTTGACACAAACTCAACTCGATGATGGTCAGAGGGTTGGATGTGACTCCATCGAACAAGACTCTTTAAATGCTAAtagggatgaagaggaggaggaagatggtgaTAGAAAGTTGAAgggcgatgatgatgatgactccTCCTTCTCAGACACagGCAGTTTGGTAGAGCTCCACCCTTCTGTGTCTCCAGAGACTACATGTCCCATCAGCCCCGTAGCAGGTTGTCCAGACGAACCCTCCTACAGTAACCCTGAAGGGGTTCCACCACAAAGCCTACAGGACCTACCTCCACCACAGaacctaccacctccaccacaGACCCTAGCACTGCCCTCCTAGCCTCCCTAGAGGAGCTAGGGGAACGTAAAGATCACTCCCACCTTCCTCAGTCCCTCCATCAGGGGCACTGCTGTCATTTCTGATCAGCACCTCTCTGCATCTGTCTACTCCAATGATGTAAATACATCATTggtctactccctccctcctcccaacaCTTTCAACTGTCTCCTGGGGGCGCGTTCAGaTAGCTGAGGCCTTTGTCCTCCAGGAAGATTATGAGCGAGCAGTGTGCTGTGTTCAGCTGGAGAGACTCTACCACCAGAGATGACTACACAACCTGACAACACTGCAGGAACAGTGGGgtatctctcactcactcactcactcactcactcactcactcactcactcactcacagagcCAATTGAAGTCTCATTATGTATAATTACctcaccttctctccctccccttactttcttggtgtgtttatGCTGTGTCATGATTATTTCCTccctctaacctctgacctttgTTCTTCCAGAGAGGAGGTGTAGGTCAGACGGTCAGGGAGTGAGGAACAATAACACCAACCTGGCTGCACAGCAACTGGACAGACTCGCATACATCTGCCAAACACACCAACGacccagtcctagaacagagaagtgtggacTCTGTCTCTGTGCATGTTGAAGATAGATGTCCTTCACGCAGCtcagTTGGGTGTGCATCAGTGATGGAGGAGGACCATAGAGTAACAGACTCCACCCTCTCCCAGAGCATCTACCCAATCAAACCAGCTGCTGCCCTGATGAACAGCCTTTGCTTTAATGACTTTGCAGCTCTGGACGTGGCACAGAACAGCAGAGACTCCCAGAGAATTGAGGGTTTCCATAGAGACCGTCTTATTGACAGCTCCCTCGccaaaggggaggagagggagggcagggCTGAGTTCACAGACTCTCGGAGCGAAGGAACACGacagcagatggagagagagatggaacacaCCACTCAGGAGGGATACGCGGGGCCTGACCCTCCTACGGATGGGGAAATGAGCCGATCCAAGCCTGAGGAGcggctgagaggagaggaagaacaggaggaggtggcagaggaggagaaggatagTGACGTGTGTTTTAAAGCTCTAGAGGAGATCTCAGTCTTGGCAGTGAAGGAGCAGCTCACACTGGAGGAGGTGCAGCAGGAGGAGGACCAGATTGAGGAGCTGTGCGAGGAGTATGTTCAGGAAGAAGACATGTTTGTTGTGGAGATTATCAGAGATGGAGCTGCGTCTCTCGATGGCCTGGCCAAACTCATCACAGTGGAGATGACCCCTGCCCCTAGCCTGGTGTCCatcctgaagaggaggaggagtgtgtgtgtggagaatgTGTGTGTTGCTCCCTCCTCGGTCCCGCACAAACATCCTGCTAAGCGCAGGGTCCGCTTCAAAGTACCTGATGACGGCTTTGACCAGGACCAGGTGGGCGGAGACTCGTGCCTGCTCCTCTTCCTGCTCTGCCTGGTCACCGTGGTGATCAGCCTGGGAGGCACTGCCCTCTACTGTGCTCTGGGCAACACCCACTCCACCGTCTGCATCGACTTTTCTCGGAACGCGGACTTCTACCTCGCACAGCTGCATCGTGGAATGGATCAGCTCCGACACTGGCTGACCCCTGGGTTTTAGCTGACCCCCAAGGAGGAGAGAAGTtaggagatgaaggagaggaaggagaatcCCTTGTTTTGCAAGGTGGATACTCTCCGTTCTCCAACTTGGACAGGATTTCTCTCCGTGTCCTCcggttttcctctctctctctcttcactggctGGCCAGTTAATGTGTGTGATGGGAGAGCGAGTGATGGAAGGTGTATGTGGTACTAGTAGCCTGCAACCACACTAACAGCAGCCTAAGACATCTGCAGCGCTGCCTAGTAGAACTAGTAGGACTGACATAAGACCTATAAAATACTGGACTACCTATAGATTTTAACTATACACTTCTGGACATAGAGTGACTCTGTGTCAGCCCAGAGGAAGGGATAGACTGGGCTAGACTCATTACCATCCGCTCACTACCATATGGAGACATCTGGATCCTTCAGGCATGGACAACACCGCTCACATGTGCAAACAAGAAGCGGCCGGTCAGCCTTTTTAAGAAACCACCTCGGCTCTTTGTTTATGGACTCCATTTTGTATCTCAACTGCACTTTGAATGTGAACAATTGTGCTCTGGTCAGAAACATGAAATAATGTCtttaaaaaatattatattaATGAACGTTTAGTTTTAATGAAACAGATTAGACTTTTCTTTATGTTCCTCACTGTTGAAGATTCTTACggagtgtgtcagggtgtttctTTGGGCTGAAGATAGTTCCTCCTAACCACAGATCTGAGATCAAATCTTAACCTCATCCTCAACCAGAAGGGGGAGGAAATGTCTGACTCTGTATCAGTAGTAAGGGCCAACTTCTACAACTTCTGTTTGAGGGTGTCTTGGGTTGTTTTGGGGTACAGATTGTAGCGTTGGTCCTCAATGACCATATATGCAACATGGACAAGAAAGCAATACGTCTGTAATCGTGTTCAAGAATGTTTAGCGCCCCAAGGGTCAGGTCGGTACTAGAAGAGGAATATCTGTTTAGCTGAGAATCGTCTTTGCTCAGGCATGTGTATATTTATCTTTATTGTGAAATAATTATGGGCATGATCAGTATTACACCGAGTGCATTACCTCCTGCGATCAATGGACTTTGGATTTGGATCAATGGATTTGGATCCAATGGATCAATGGATTTTTACTTATTATAATTTTTGTGCTCATTGTTATTTCTTTTATTTCAGGCTTTTTATTAGTCTATTTAATCTGTTTTACTGTTTGTGTCAGTCGGCGGTATGTTTTAGTTTCGTCTGGCGTTCAGTAGACGTGTCACAGTGGCTCCTATGATAATGTAATGATGATGTAGTAGGCTGGGCAGTGACTCTTAGGCTGCATCCCAACAGTCTAAAGTGTTTTCCTCttcttgtctcctctctttcatctcctcTTATCTGAAaacacaagacaggtgaaacaaacTGCAAATATTCAGAACTGTTTTCAAATGGACAATATAGATATGCAATTTGCTTTCGTCTTTCAAGGTTCTTTCAGAGGGGGGAGGATGAAGGAAAAGAGACGAGGGGAGGATGCCACAGTAGAGTATTGAGATGCAGCCTTGGTTCTAAAATGATTTGCACGTGTCTGGCTGGTCCAGATGACTGTCTTGCTGTTTGGATCTGAAGTATTTATATCATATCTGCACgtggggagagaaaaaaaacgacCTTCTGTTGTTTTTCTTGTTTTGGCTTGATGTGGTTATCGTTGGTTGTTATTTTCCCTTGTTTTGTTCTTGAAGACTATGTTTTGAAAAAGAGGAGTCTCTTTCCAAGGCTCACCAGTTAAAGAATGCCAGTTGGAAAAGTCAGAACAGAAGCGGGACAGTCTCCATTTTCAACTTTTAATCTCTGAGTATGATGACATGTGAAGACGATTAGCTAATGTGTGTCATTGTGGCCAATGCTTCGTTCAgaaccaagtgggaaggtggaAATTACCAATTTGTAATTGTGAGTTTGATGCATTCACTTGCTTTGAACTTGTTGAGAAACGCTGATTGGCTTAAGGCAAACAAGCTGGGTCAAACAAACTAAAAGTATagctatcatgcttgtaaacaaattatagttcaaaaatcatattaatagattgctttttacaaataatgttttgttgcatTTAACTACCAAATGCTGTTATCAAGATGATAATTTCCTTAGTAGGTGACGTCGGAGttcagcatgtgggagaagtcGGCGCTCAGGGATGATAGTTTCTCACTAGTAATTACAAGTTGGAGGGCCCGGTCGTATATggtaagcatttttctacacccgcaataacatctgctaaatatgtgtatgtgaccaataaaattggatttgatttgaataccaCCTTCCCACTTAGTGATGAACACAGCATCAAATCTTTATTTGCAGTCTGTGAAGAAAACAATGGgcaagtttgttttgcatggccTGGTACCCCGGATGGGTGGAGTTTGTTCATTTAaaccattccattggtccttaaGTGAAATCTCTACCTACCCAGTGCACCGGGCTTTGCAAAACAAATCACCATTTAGAGGGATGACTGTGGTGAGTACCTTTTTAAacacctgtttctctctgttgatTGGTTAATAAACCTCACTGTGGGGACTGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1872053 lncRNA upstream 16740 52099568 ~ 52101728 (+) True G1636327
TU1872038 lncRNA upstream 126416 51991740 ~ 51992052 (+) True LOC110498383
TU1872037 lncRNA upstream 127142 51990587 ~ 51991326 (+) False LOC110498383
TU1872036 lncRNA upstream 153794 51957567 ~ 51964674 (+) True G1636311
TU1872028 lncRNA upstream 170315 51947494 ~ 51948153 (+) True G1636305
TU1872124 lncRNA downstream 5140 52155291 ~ 52156011 (+) True G1636396
TU1872174 lncRNA downstream 138760 52288911 ~ 52291793 (+) True G1636442
TU1872186 lncRNA downstream 154534 52304685 ~ 52635036 (+) True G1636452
TU1872197 lncRNA downstream 173846 52323997 ~ 52328732 (+) False G1636460
TU1872198 lncRNA downstream 173846 52323997 ~ 52329189 (+) False G1636460
XM_036955042.1 mRNA upstream 297 52107642 ~ 52118171 (+) True tfb2m
XM_036955040.1 mRNA upstream 82582 52004125 ~ 52035886 (+) False LOC110498384
XM_036955041.1 mRNA upstream 82582 52004125 ~ 52035886 (+) True LOC110498384
XM_036953829.1 mRNA upstream 125921 51942392 ~ 51992547 (+) False LOC110498383
XM_036955033.1 mRNA upstream 1437494 50659972 ~ 50680974 (+) False LOC110498087
XM_036955055.1 mRNA downstream 411572 52561723 ~ 52576112 (+) False hnrnpua
XM_036955056.1 mRNA downstream 411572 52561723 ~ 52576112 (+) False hnrnpua
XM_021574683.2 mRNA downstream 433967 52584118 ~ 52600076 (+) True LOC110498099
XM_036955059.1 mRNA downstream 462445 52612596 ~ 52646891 (+) False LOC110498100
XM_036955058.1 mRNA downstream 462445 52612596 ~ 52646892 (+) False LOC110498100
TU1870554 other upstream 1507989 50607386 ~ 50610479 (+) True G1634948
TU1869885 other upstream 1863216 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 1951082 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 2940066 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 2950915 49163954 ~ 49167553 (+) False zgc:193593
TU1872309 other downstream 424782 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other downstream 424805 52574956 ~ 52575617 (+) False hnrnpua
TU1872308 other downstream 424805 52574956 ~ 52576154 (+) True hnrnpua
TU1872895 other downstream 600449 52750600 ~ 52755474 (+) True G1637065
TU1873027 other downstream 767186 52917337 ~ 52918478 (+) True G1637178

Expression Profile