RNA id: TU1872309


Basic Information

Item Value
RNA id TU1872309
length 369
RNA type TUCP
GC content 0.57
exon number 3
gene id hnrnpua
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52561723 ~ 52576154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGGAACATGGGGGGTAATAGGGGAGGCAATATGTACCGAGGCAGCATGACccgcggaggaggtggaggtggaagaGGACGTGGGGACAACAGGGGCAACTTCACACAGTTCAGAGGCAGAGGAGGCAACAATCGCAGCTTCAACAAGAACAGCAACTTTGGCATGAACAAGGCCCAGGCCTTCAACCAGAGCTGGCAGCAGGGGTTCTggaaccagaagccatggagccaacagtaccacccAGGATACTACTGAGCATGTGCGgtagagagactgactgacagcacacagacacacccccTCACTACAAACCCCGTCCACCCCGGCGCATACGCGCCAACTCCCGTTACGCTCCATTTtaccttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1872226 lncRNA upstream 184839 52388786 ~ 52390094 (+) True G1636483
TU1872211 lncRNA upstream 219690 52349604 ~ 52355243 (+) True G1636468
TU1872198 lncRNA upstream 245744 52323997 ~ 52329189 (+) False G1636460
TU1872197 lncRNA upstream 246201 52323997 ~ 52328732 (+) False G1636460
TU1872200 lncRNA upstream 246201 52323997 ~ 52328732 (+) True G1636460
TU1872364 lncRNA downstream 83691 52659308 ~ 52661396 (+) True G1636602
TU1872362 lncRNA downstream 86097 52661714 ~ 52663784 (+) True G1636601
TU1872383 lncRNA downstream 98984 52674601 ~ 52674995 (+) True G1636620
TU1872392 lncRNA downstream 106663 52682280 ~ 52684869 (+) False G1636629
TU1872394 lncRNA downstream 106663 52682280 ~ 52685726 (+) True G1636629
XM_036955043.1 mRNA upstream 424782 52118468 ~ 52150151 (+) False LOC110498094
XM_036955044.1 mRNA upstream 424782 52118468 ~ 52150151 (+) False LOC110498094
XM_036955045.1 mRNA upstream 424782 52118468 ~ 52150151 (+) False LOC110498094
XM_036955046.1 mRNA upstream 424782 52118468 ~ 52150151 (+) False LOC110498094
XM_036955047.1 mRNA upstream 424782 52118468 ~ 52150151 (+) False LOC110498094
XM_021574683.2 mRNA downstream 8501 52584118 ~ 52600076 (+) True LOC110498099
XM_036955059.1 mRNA downstream 36979 52612596 ~ 52646891 (+) False LOC110498100
XM_036955058.1 mRNA downstream 36979 52612596 ~ 52646892 (+) False LOC110498100
XM_036955057.1 mRNA downstream 36986 52612603 ~ 52646890 (+) False LOC110498100
XM_036955062.1 mRNA downstream 36986 52612603 ~ 52646890 (+) False LOC110498100
TU1870554 other upstream 1964454 50607386 ~ 50610479 (+) True G1634948
TU1869885 other upstream 2319681 50243619 ~ 50255252 (+) True LOC110498078
TU1869832 other upstream 2407547 50163839 ~ 50167386 (+) False LOC110498072
TU1868248 other upstream 3396531 49163954 ~ 49178402 (+) True zgc:193593
TU1868247 other upstream 3407380 49163954 ~ 49167553 (+) False zgc:193593
TU1872895 other downstream 174983 52750600 ~ 52755474 (+) True G1637065
TU1873027 other downstream 341720 52917337 ~ 52918478 (+) True G1637178
TU1873637 other downstream 854387 53430004 ~ 53430560 (+) True G1637730
TU1874669 other downstream 1599179 54174796 ~ 54175130 (+) True G1638710
TU1874741 other downstream 1664639 54240256 ~ 54240751 (+) False G1638780

Expression Profile