RNA id: XM_036955059.1


Basic Information

Item Value
RNA id XM_036955059.1
length 2189
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC110498100
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52612596 ~ 52646892 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATATGTTTCTGGGACGTTGCTGCAACAGCAATTTCCAAAACTACGAATCCCAGGGAACCTCACCCCGCTTGCTATGTCAATATGGCCACTGTCAAACAGACAAAGGCACATCAATCTCGCCACGAAATGAAATTAGCAGACTAGAGGAGGGCGGCTGTCATTGTGAAAACCGTCTGGTGCCTGTTCCCGTGTCGGGGATATAGAAGAGGACTTGTCGCGAGGACCAATTTAACACCGGGTTATTAAATGCTGTGGTGGACGGGGGCCCTAGATTCTAAGATCAAGCAAACGGAGCAAAACAagagtttatattggacaaattcaggatGTCTCGGTATACCGACGAGCCTCGTTTCACCATTGAGCAGATTGACCTGCTCCAGCGGCTGaggaggacagggatgaccaagCCAGAGCTCCTCCACGCCCTGGACATCCTGGAAAGACTGGATCACCAGCACGGACACAAGTTTGGACGCCGTCCCCAGCCCGCCTATCAGGGACCGACGCCCAATTACAACACTAATTCAACATCTTCTTCGGCGTCCTCATCAACGTCCACGACCGCCACACAGACTGGTTACCTGGAGAATGGGAGTGGAAGTGGCGGGAATGGCCTGTCGCCGTCGCCTAGCAACAACTATGATATGTCACCGCCCCTTCCGGCGGTTGTATCCGACCCAGTTGCTATGGCAGTGGTGGCGCAGAACGGGCATGGGGTTGGTGGCGGCGATGAGCTGGTTGCCGTGACGAACGGGAAGTTGTCTCCACCACGGTTTCCTGACAGTGTAGGCGCGGTGAGTGGCGGCGTGACGGGGAGCGGTTACGGGTTTGAGGCCAGCGAGGAGGAACTAGACGTGGACGACAAAGTTGAGGAACTcctgaggAGGGACAGTGCCATAATCAAGGAGGAGATCAAGGCATTCCTGGGGAACAGGCGCATCTCTCAGGCAGTGGTGGCTCAGGTCACAGgTATCAGTCAGAGTCGTATCTCCCACTGGCTGCTGCAGCAGGGCTCGGACCTTAGCGAACAGAAGAAGAGGGCCTTCTACCGCTGGTACCAGCTGGAGAAGACCACCCCTGGTGCAACTCTGACGATGCGACCAGCCCCCATGGCTCTGGAGGACGTGGTGGAGTTGCGGCAGACTCCGCCCCCTATAAGCTCCACCCCCGGGAGCTTCCGTCTGCGCAGAGGCAGTCGCTTTACCTGGAGGAAAGAATGTCTGTCTGTGATGGAGAGTTACTTCAATGAGAACCAGTACCCTGATGAAGCTAAAAGAGAGGAGATCTCTAACGCCTGCAACGCTGTCATCCAGAAGCCAGGGAAGAAGCTGTCTGATCTGGAGAAGGTCACGTCTCTGAAGGTCTACAACTGGTTCGCCAACCGACGCAAAGAGATCAAGAGACGTGCCAACATAGAAGCAGCAATCCTGGAGAGCCATGGGATTGAAGTCCAGAGCCCTGGAGGACACTCCAACAGCGACGAAATCGACGGGAATGACTTCTCTGACCAGGGCTGTGAGGTTCCTCTGTTTGAGAAGAGAGCTGTGACTAGACCTTTCAGTCTCAGTCGACGAGACCTGTCCTCTCCCACACAGGTTCCCACCCTGCTGCCAAGCTGGCTGGCGGCTTGGCCCGGCTCGGGCAGGGGGGGCTTGGCCGTCCAGAGGGCCAGCTCTCTGATTTGCCGATCCTTGCTCTCGGGAGCGAGTCTCGCTCAGGGGGCAGGGACGGAGGGTTCCAGACTGACTGGTGTGTCCTGGtctgccccctcccccccctccctccaggaCGACTCCTCCACCAATCACAGCAATGCCCTGGAGCACCAGGATCCCATCACTCTCGCAGTGGAGATGGCGGCCGTCAATCATAGCATCCTCGCCCTAGCCACGCAGGCGGGGGGAGGATTGGCCCTGGGCGGGACAGGCAGTGACATCAAGACCGAGGTGGTGGAGCCCAACTAGGGGGGGTGAGACTGTGGATGAgcgggagggatgagagggacgGAAAGATGTGTGTATACATGACAGTATGAACGAGGGagggaaaggtgtgtgtgtgtgtgtgtgtacatcacaGTAAGAAGGAGGGAGTGaatactactgttcaaaagtttggggtcactaagaaatgtccttgtttttgaaagaaaagcaaaaaaaattgtccatttaaaatgacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1872226 lncRNA upstream 222502 52388786 ~ 52390094 (+) True G1636483
TU1872211 lncRNA upstream 257353 52349604 ~ 52355243 (+) True G1636468
TU1872198 lncRNA upstream 283407 52323997 ~ 52329189 (+) False G1636460
TU1872197 lncRNA upstream 283864 52323997 ~ 52328732 (+) False G1636460
TU1872200 lncRNA upstream 283864 52323997 ~ 52328732 (+) True G1636460
TU1872364 lncRNA downstream 12417 52659308 ~ 52661396 (+) True G1636602
TU1872362 lncRNA downstream 14823 52661714 ~ 52663784 (+) True G1636601
TU1872383 lncRNA downstream 27710 52674601 ~ 52674995 (+) True G1636620
TU1872392 lncRNA downstream 35389 52682280 ~ 52684869 (+) False G1636629
TU1872394 lncRNA downstream 35389 52682280 ~ 52685726 (+) True G1636629
XM_021574683.2 mRNA upstream 12520 52584118 ~ 52600076 (+) True LOC110498099
XM_036955055.1 mRNA upstream 36484 52561723 ~ 52576112 (+) False hnrnpua
XM_036955056.1 mRNA upstream 36484 52561723 ~ 52576112 (+) False hnrnpua
XM_036955050.1 mRNA upstream 462445 52118498 ~ 52150151 (+) False LOC110498094
XM_036955070.1 mRNA downstream 148429 52795320 ~ 52835776 (+) True LOC110498105
XM_021574699.2 mRNA downstream 399354 53046245 ~ 53061764 (+) False LOC110498109
XM_021574700.2 mRNA downstream 399370 53046261 ~ 53061762 (+) False LOC110498109
XM_021574701.2 mRNA downstream 400106 53046997 ~ 53061762 (+) True LOC110498109
XM_036955074.1 mRNA downstream 419926 53066817 ~ 53092156 (+) False LOC110498110
TU1872308 other upstream 36442 52574956 ~ 52576154 (+) True hnrnpua
TU1872309 other upstream 36979 52574933 ~ 52575617 (+) False hnrnpua
TU1872307 other upstream 36979 52574956 ~ 52575617 (+) False hnrnpua
TU1870554 other upstream 2002117 50607386 ~ 50610479 (+) True G1634948
TU1869885 other upstream 2357344 50243619 ~ 50255252 (+) True LOC110498078
TU1872895 other downstream 103709 52750600 ~ 52755474 (+) True G1637065
TU1873027 other downstream 270446 52917337 ~ 52918478 (+) True G1637178
TU1873637 other downstream 783113 53430004 ~ 53430560 (+) True G1637730
TU1874669 other downstream 1527905 54174796 ~ 54175130 (+) True G1638710
TU1874741 other downstream 1593365 54240256 ~ 54240751 (+) False G1638780

Expression Profile