RNA id: XM_036955086.1


Basic Information

Item Value
RNA id XM_036955086.1
length 6285
RNA type mRNA
GC content 0.55
exon number 33
gene id LOC110498117
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 53342473 ~ 53444115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGACAAGCCACTCAAATCGTCAAATGTTCTTAGCTGGTTTAACATGCCTGAAAATTACAAGATGGTTGTGGTGTCAAAACAGTCAAACTGAACGTTGGAAAGTAAAAAAGGAAGCACAGGGTAACCCAGCTTGGACGAGGGGACGCTGTATTGTTCATTACTCCTAAAAGgaggagcctgcctgttacgtgaatgcattagaagccaagTTGTGGCGGTGAGGCGTAGCCATGGACACCAGCACCTCTCTGGCCATCCAGAGCCTGTTCAGCTACGTAGAGGAGGACAACGTGCCGGCCATCAAAGCCCACCTGGACAAGTTCAAGGAGGTGGACAGCAGGAGCGAGaaTGGTCAGACTCTCCTCATGATGGCATCAGAACAGGGCAGCCTAGAGATGGTCCAGGAGCTCCTCAGGAGGGGAGCCAATGTCAACCTGGATGACGTGGACTGCTGGACGGCGCTGATCTCGGCGGCTATGGAGGGCCATGTGGAGGTGGTGAAGGAGCTGCTGGCCAACAATGCCAGCCTGGAGCACCGGGACATGGGGGGATGGAGCGCCCTCATGTGGGCTTCCTATAAGGGTCGTGTGGAGGTGGCCCAGCTGCTGCTGGAGAAAGGAGCTAGCCCCAACATCACTGGCCAGTACAGTGTGTTTCCTGTCATCTGGGCAGCCGGACGAGGCCATGCTGAGATCGTCCATCTCCTCATTAAGCATGGCGCTAAAGTCAACTGCTCTGACAAgTATGGCACTACCCCGTTGATCTGGGCAGCCAGGAAGGGCCACTTTGACAGTGTGATGCACCTGCTGGTCAATGGGGCTGATGTGGACCAGGAGGGAGCGAATTCCATGACAGCTCTAATCGTGGCGGTGCGGGGTGGTTTCAATGAGGTGGTGAAGGAGCTTCTGAAGAGGAACCCCAATGTCAACATGACAGACAAGGACGGCAACACAGCCCTGATGATCGCTGCCAAGGAGGGCTACACTGAGATAGTACAGGACCTGCTGGATGCTGGCACCTACGTCAACATACCAGACAGGAGTGGGGAGACGGTGCTGattggagcagtgcgaggaggaCATGTAGAGATCGTCAGAGCCCTTCTGAACAAATATGCCGACATTGACGTCAGGGGACAGGACAGTAAGACTGCTCTCTACTGGGCGGTAGAGAAAGGGAACTGCACCATGGTGAGAGACATCCTTCAGTGCAACCCGGACACTGAGAGTTGCACCAAGGATTCAGAGACCCCTCTGATCAAAGCCACCAAGATGAGGAACATTGAGATAGTAGAGCTGCTCCTGCACAGAGGGGCCAAGGTGGCTGCTGTCGACAAGAAAGGAGACACAGCCCTTCACATTGCCATCAGAGGGCGGAGCCGCAAGCTGGCTGAGCTCCTCCTGAGGAACCCTAAAGATGGCCGCCTGCTCTACCGCCCCAACAAGGCCGGCGAGACGCCTTACAACATTGACTGCACCCACCAGAAAAGCATCCTCACCCAGATATTTGGAGCCAAGCACCTGTCTCCTTCTGAGTCTGACGGTGACATGCTGGGGTATGATCTGTACAGCAGTGCCCTAGCAGACATCCTCAGTGAGCCCACCATGCAGCCTCCTATCTGTGTGGGCCTGTACGCCCAGTGGGGCAGCGGCAAGTCCTTCCTGCTCAAGAAACTGGAGGATGAGATGAAGAATTTTGCGGGCCAGCAGATTAAACCTCTGTTCCAGTTCTCCTGGTTGGTGGTGTTCCTCACGCTGCTGCTGTGTGGCTCTGTAGCTCTGGTCCTGGGCTTCACAGTCACCCACCGCCTGGCCATCGCCGTCTCCCTCAGCCTCCTCGCCCTGCTCTACGTCTTCTTTGtgttggTGTACTATGGGGGTCATCGTGAGGGGGAGAACTGGAACTGGGCGTGGGTCCTCAGTACCCGTCTGGCCCGTCAGGTGGGCTACCTGGAGCTGCTTCTTAAACTCATGTTCGTCAACCCCCCCGAGCTGCCTGAGCAGACCACCCGCGCCCTGCCTGTCAGGTTCCTGTTCACAGACTACAACCGTCTGTCCAGTGTGGGAGGAGAGACGTCTATGGCAGAGATGATAGCCACTCTGTCTGACGCCTGTGAGAGGGAGTTTGGCTTCATGGCCACCCGCCTCTTCAGGGTGTTCAAGAATGAGGAGAACCAAGGTAAGAAGTGGAAGAAGACGTGCTGCGTGCCCAGCTTCATGCTGTTTGTCGTGACTCTGGGCTGCCTGATCACAGCCATGGCGCTGCTGGCCATCTTcaagGTGCAGCATGACAACCTGACGGTGAACGCGGTGCTGATCGCCATGGCCAGCGTGGTGGGCCTGGCCCTCCTGTTGAACTGCAGGACTTGGTGGCAGGTGGCTGACTCCGTCCTCAACTCTCAGAGGAAGAGGCTGCACAGTGCCGCCAACAAGATGCACAAGCTCAAGAGTGAGGGCTTCATGAAGGTGTTGAAGCAGGAGGTGGAGCTGATGTCAAAGATGGCCAAGACCATCGACGGTTTCACCCAGAACCAGACCCGCATGACGGTCATCATCGACGGCCTGGACGCTTGCGAACAGGACAAAGTGCTGCAGATGCTcgacacgGTGAGGGTGCTGTTCTCCAAAGGCCCCTTCATCTCTATTTTTGCCAGTGACCCCCACATCATCATCAAGGCCATCAACCAGAACCTGAACAGCGTGCTCAGGGACTCCAACATCAACGGCCACGACTACATGAGGAACATCGTCCACCTGCCTGTCTTTCTCAACAGCCGAAGTCTTAGCACCACCAGGAAGCTGTGCATGGCCGCCCCCACTCCCAACGGAGACCTGGTCAACCCTGAGGGATGgcatgaggagatggacaggaagCTATCCTCGAACAGTCTGGGGGATCAGGCCAAGTTTGGCAGCAAGACGGCCCTCAACCGCAGAGACACATACCGCAGGAGGCAGATTCAGAGGACCGTCACCAGACAGATGTCCTTTGACCTGACCAAGCTGCTGGTCACTGAGGACTGGTTCAGTGACATCAGCCCCCAGACCATGAGGAGGCTGCTCAACATTGTCTCCGTCACagGTCGTCTGCTGAGGGCCAATCATATCATCTTTATCTGGGACCGTCTGGTGTCATGGATCAACATGACGGAGGAGTGGCCTTACAGGACCTCCTGGCTCATCCTCTTCCTGGAGGAGACCGACGGCATCTCAGACCAGGTCACCCTGAAGACCATCTACGAgagAATCTCCAAAAACATCCCCACCACCAAAGACGTGGAGCCCCTGTTGGAGATCGATGGGGACATCCGCAGCTTCGAGGTGTTCCTGTCCTCGCGGACACCCGTTCTCACGGCACGCGACGTGGAGATGTTCCTTCCCTGCACCGTCAACCTGGACCCCAAACTCCGCGAGATCATTGCAGaTGTCCGTGCTGCCAGGGAGCAGATGCACATTGGAGGAGTGGCCTATCCCACGCTGCCCCTGCAGGACGTGCCAGCCCGCGCCCCCTCCTCTTTCGGCCAGCACTCGGCTGCCTGCTCCCCCACAGGCTCCTACGTTGGTTCCCTGCCCCCCCCAGGGCTTGTGCCCCCCCAGCCCCACAGCAGTTACTACAGCATGCCTGCCCCCCAGCACCCCTTCTACACCCGGCCCTATTTTCCCAATCATGTGTATCACCTTCCCCGTCATCAATACAGCTCCCATCTTCACCCTGCCCCGACCCAATCACGCCCCTCCTTCAAAACAGGCTACCCCAGGGACCCCAATGGGCTTGATGTAATTGCTGAGGATCCCAGAGAGGGCCTCCCCTCCCCCACTACCACTGACCCCCCTATGCAGTTGTCTCAGCCTTTCAGACCCAAGCAGggttcTGCCTCTGGGGTACCGGGAACCCCTGTGGTACTCCTCAGCTCTCTGAACACGGACGCAGTGTGTGAGCGCGTCAAACAGATCGCCGGCATGGACTCTAGCATGCTGGGCCAGTATACCTCCACTATCAAGAAGgCCAATGTGAATGGCCGGGTGCTGTCTCAGTGCAACCTGGAAGAGCTGAAGAATGAGATGAACATGAACTTTGGGGACTGGCAGCTCTTCAGAGGGATGGTGATGGAACAGCGTAATGTGGAGGGCCAGGCCCTGCAGGACGAGTCACGTGCAGCCAGCGAGCAGGGCAGCAGCGTGGCCAACATGGAGACGGCCAGGCACCAGGGCCAGGGAGCTCCCCATGAGGTGGGCGACTACATCTTGAACCTCAGCTTCGAGGAGCTCAGTAACATGGGCCTGAGCCTGGAGGAACccacccagacacacagagagactacaCAGCACTGGCCCATGaCGGCCACCCACCATACCCCGAGTATATCCAGCCTCAACTTCCAGGAGTCATCCAACGACATCTGCAAGCTTACGGACAAGCAGCAGGCAGAGTACCACGATGCCTACCGTGAGTACATCGCCCAGATGACCCAGCTAGACGTGGCCGGAGGCGGGGGAGAGAAGTCTGTCCAGCCCCACCTGGGCCAGTTCCTCCAATACCGAGATGCCAGAAACCCAGAGGAGAATGCCAAAGACGGGTCCGAGAAGGATGGCCGTAAGCCCTCTTTCCCTACCAAGAGAGGTGCTAAAGCCACGGACGTGGTTGACACTGATGTGCCCCTGGACCCCATCAGCGAAGAGGATGAGAAGCTTGACGCCTCTAAAGCAGGCAGTTCCAAGGTAAAGGGACCAGGGCCTCGCTACCACAAAGTTCCCAGCAACGAGGAGGAGGGGTCCGGGCCGGAGGAATCAGAAAACACCCCTCTGCTCAACAACGGGGGTGCCCAAGCGCCCAGCAACATCGCCCTAAACAAGAAGGACTCGTCCGACTCGGGTGTGAGGTCTGGCGAGAGCTCCTCGGACCACTCCCTGGAGGAAGTGTTAGTGGAAGCAGAAGAGGAGGGGGTTAATAAATTGGAACTGGAGGGTCTGGTCAAGAAGAGGGGCCTGCTGCCCAGCAGTCTGAGCGGCCTTCAGGATTCCACTATCACCCGCATGTCCATCTGCTCTGAGGCCCCGTCCGAGGGCAGCCCAATGGCCTCCAGTCCCGACGAAACCTGGTTCCGCTCCAGCTCCTCCGTGAGCAACCTCAACCGCACCCCCAGCACCACCACGctcaacaacaacagaaacagcAGCAACAACGCTGCCACCACCAACACTAGCCAAGACAACCAAGACACAGAGAGCTCCACCCCAGTCCTCATCACCCCAGGCTCCAGCACCGGCTCTACCTCCACCACGAGGCCCGTCCACATCCAGAACCTGTGTGGGATCATCCATAAGAGGCCGCTGGGCACCGGCGAGACCCTCAAAGGCTGCACAGGGGCCCCTGACGCTATTGTcttggaggacgagagagagagtgtcctGTGAGAGGGGCCCGGGCCTTTTTGGAGGAGGTACCATAGATGTTTGATGTTGTGATGTGCTACAAAAATAAATGCCTTTTACCAATCCTGTGTTACATTGATATGGATGGCAATCAAAACAGGCCTATTAATCTGTGACTTCGTTTGAAAAATATTTGAGAGAAGAAGTTGATATGCGGGTCAGTAAACATCAATTCACATGAAGAGAATCACCTTTTTTTCCAACCTTAGAAATATTAAATCATTTGGGTTGAAGAAATTCAATGTCCTGAATAGATTTTGTGAATTCATTTGAAAGTTAATGACGATGACAGACTAAAATGGACTATACGTCAAATTGAAATGGCCCTCTAATTCAATTAAGTGTGCTGTCATGTTCACTTTAGCTGTTACTAAATAATGGTAGTAAATTGTTAAATAATGGTAGTGAATTGTTAAATAATGGTAGTGAATTGTTGGATAATGGTGGTGAATTATGGAGTTGTGTGTATgaatgttgtgttgtggtggtgacATTACAGTACAGTGGTGTGTGTTGGTGCAATGTGTTCTGTACTTTGTGATTGGTTACTGAAATCTGAGTTGGCTTTATGTGCTTGAAAACAAAATAAGTTTTCCTCATTTCTAGTTATCAAGTACCTGTTAATTTATGTAGCGTGGCTGTCGATTGGCGTTCTGACTGAAAGGTCTATTTCCCCAAGAATATACTGATATTTTGTgctataatttaaaaaatatttgaacTCTTTAGTGTGAACAGTGATGTGGTAAACCTGAGTTTCCCATGCACTACGGATGTCCATCCGAGGTTCTGAACCTTTTGAGTGCATTGTGAAGCCATGTATTTGTGAAATAATAAACATATTCTCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1873537 lncRNA upstream 253 53341581 ~ 53342220 (+) True LOC110498114
TU1873531 lncRNA upstream 86740 53255003 ~ 53255733 (+) True G1637631
TU1873527 lncRNA upstream 89458 53252779 ~ 53253015 (+) True G1637627
TU1873143 lncRNA upstream 167213 53114380 ~ 53175260 (+) True G1637290
TU1873639 lncRNA downstream 4437 53448552 ~ 53448992 (+) True G1637732
TU1873640 lncRNA downstream 5714 53449829 ~ 53450127 (+) True G1637733
TU1873790 lncRNA downstream 25500 53469615 ~ 53469820 (+) True G1637872
TU1873819 lncRNA downstream 84419 53528534 ~ 53528860 (+) True G1637901
TU1873898 lncRNA downstream 162852 53606967 ~ 53609407 (+) True LOC118941378
XM_021574706.2 mRNA upstream 251 53259730 ~ 53342222 (+) False LOC110498114
XM_036955082.1 mRNA upstream 251 53321387 ~ 53342222 (+) False LOC110498114
XM_021574704.2 mRNA upstream 229021 53106681 ~ 53113452 (+) False LOC110498111
XM_036953848.1 mRNA downstream 163218 53607333 ~ 53609550 (+) False LOC118941378
XM_036955105.1 mRNA downstream 1273658 54717773 ~ 54815955 (+) False LOC110498124
XM_036955103.1 mRNA downstream 1273660 54717775 ~ 54815955 (+) False LOC110498124
XM_036955104.1 mRNA downstream 1273660 54717775 ~ 54815955 (+) True LOC110498124
XM_021574721.2 mRNA downstream 1468345 54912460 ~ 54923456 (+) True LOC110498125
TU1873027 other upstream 423995 52917337 ~ 52918478 (+) True G1637178
TU1872895 other upstream 586999 52750600 ~ 52755474 (+) True G1637065
TU1872308 other upstream 766319 52574956 ~ 52576154 (+) True hnrnpua
TU1872309 other upstream 766856 52574933 ~ 52575617 (+) False hnrnpua
TU1874669 other downstream 730681 54174796 ~ 54175130 (+) True G1638710
TU1874741 other downstream 796141 54240256 ~ 54240751 (+) False G1638780
TU1874742 other downstream 796141 54240256 ~ 54240751 (+) False G1638780
TU1875462 other downstream 1524242 54968357 ~ 54969610 (+) True LOC110498128
TU1876918 other downstream 2483533 55927648 ~ 55930295 (+) True LOC110498153

Expression Profile