RNA id: TCONS_00048949


Basic Information

Item Value
RNA id TCONS_00048949
length 826
RNA type nonsense_mediated_decay
GC content 0.50
exon number 10
gene id XLOC_024872
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 36249279 ~ 36263125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGATGTAGTGCGACTTCAGCGCTGGATTCATCGGATGATGAAGGTGATGATGGCGAACACTGTGGGAAGGCTGTGTTTCCGCCAGAAGAATATTCTGGCTCCTATGGTGCGGGTTGGAACTCTTCCCATGAGGCTTCTGGCTCTGGATTATGGAGCAGATATTGTTTACTGTGAGGAGCTGATTGATATTAAGATGGCCCAGTGTGAGCGAGTGGAAAACGGGAGAATGATGTGGCGGCTGTGGATGTGAATATGGGCTGTCCAAAGGAATACTCCACAAAGGGAGGAATGGGTTCAGCGCTTCTCTCTGACCCTGAGAAAATTGAAGCTATTCTCACCACTCTTGTGAAAGGAATCTCAAAGCCTGTTACCTGTAAAATCAGGATCCTGTCAACAATTGAGGATACAGTGAATTTAGTGAAGAGAATTGAAAAGACGGGAGTGGCGGCCATTGCGGTTCATGGCAGGATGAAAGACGAGCGACCGCGACACCCGGTGCACTGTGACTACATCCAGGCTGTGGCCCAGAGCGTCTCCGTACCCGTCATTGCCAATGGCGGCTCTTCAGACATCGTGAAGGAGTTTGAGGACATCGAGACATTTCGGGAGTCGACTGGAGCTTCATCCGTCATGTTAGCTCGAGCCGCCATGTGGAATCCTTCAGTCTTCcggcagcagggggcgctgtctGTGGACCAGGTCATGCAGGAGTACATCACATACGCTGTTCGCTATGACAATAATCCATTTAACACCAAATACTGCTTATGTCAGATGCTCAGAGACAGAGTCGAGTCTCCATTTGGGAAGCGTTTGCATGCAGCTC

Function

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-100922-233 Predicted to enable tRNA dihydrouridine synthase activity. Predicted to be involved in tRNA dihydrouridine synthesis. Predicted to act upstream of or within tRNA processing. Predicted to be active in cytoplasm. Orthologous to human DUS2 (dihydrouridine synthase 2).

Ensembl:

ensembl_id ENSDART00000135990

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049448 lncRNA downstream 94850 36155630 ~ 36159479 (-) True XLOC_024869
TCONS_00049447 lncRNA downstream 101944 36139843 ~ 36152385 (-) True XLOC_024868
TCONS_00049446 lncRNA downstream 103882 36139843 ~ 36150447 (-) False XLOC_024868
TCONS_00049445 lncRNA downstream 109397 36139843 ~ 36144932 (-) False XLOC_024868
TCONS_00049444 lncRNA downstream 109596 36139843 ~ 36144733 (-) False XLOC_024868
TCONS_00048956 lncRNA upstream 26132 36289244 ~ 36292339 (-) True XLOC_024874
TCONS_00049109 lncRNA upstream 462945 36726057 ~ 36790229 (-) True XLOC_024883
TCONS_00048965 lncRNA upstream 471135 36734247 ~ 36734883 (-) True XLOC_024884
TCONS_00049450 lncRNA upstream 871674 37134786 ~ 37140107 (-) True XLOC_024889
TCONS_00049451 lncRNA upstream 949453 37212565 ~ 37215662 (-) True XLOC_024895
TCONS_00048945 mRNA downstream 6276 36219436 ~ 36248053 (-) True XLOC_024871
TCONS_00048943 mRNA downstream 36766 36197733 ~ 36217563 (-) False XLOC_024870
TCONS_00048944 mRNA downstream 36766 36197736 ~ 36217563 (-) True XLOC_024870
TCONS_00048940 mRNA downstream 209746 36011470 ~ 36044583 (-) False XLOC_024866
TCONS_00048941 mRNA downstream 210035 36022385 ~ 36044294 (-) True XLOC_024866
TCONS_00048953 mRNA upstream 3670 36266782 ~ 36282539 (-) False XLOC_024873
TCONS_00048954 mRNA upstream 4222 36267334 ~ 36286186 (-) True XLOC_024873
TCONS_00048955 mRNA upstream 24633 36287745 ~ 36292346 (-) False XLOC_024874
TCONS_00048957 mRNA upstream 47138 36310250 ~ 36310561 (-) True XLOC_024875
TCONS_00048958 mRNA upstream 98138 36361250 ~ 36361697 (-) True XLOC_024876
TCONS_00048942 other downstream 195674 36058520 ~ 36058655 (-) True XLOC_024867
TCONS_00048937 other downstream 291124 35958154 ~ 35963205 (-) True XLOC_024864
TCONS_00048891 other downstream 1159217 35091912 ~ 35095112 (-) False XLOC_024824
TCONS_00048871 other downstream 1999056 34255145 ~ 34255273 (-) True XLOC_024807
TCONS_00048855 other downstream 4233334 32020881 ~ 32020995 (-) True XLOC_024789
TCONS_00048967 other upstream 697612 36960724 ~ 36975214 (-) False XLOC_024886
TCONS_00048972 other upstream 881856 37144968 ~ 37145083 (-) True XLOC_024891

Expression Profile

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