RNA id: XM_021574751.2


Basic Information

Item Value
RNA id XM_021574751.2
length 1860
RNA type mRNA
GC content 0.48
exon number 10
gene id zmpste24
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55454754 ~ 55459560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACTGGTTCAGTTTCACTGGGAACAAAATTAACTGCTGCACTGACATTTAGCATGGCAACCGCCGTTGAACGTTATCGAAGAAGAACATTTAGTATGAATGGAAACTGGATGCGAATGAGCTTGCTATCATTTTGAGTGGACTGGTGAATGCTAGTCAATTTAATCTGGGGATATAAACCATACTAAGTTATTTAAATATAAACAGTTGTATCTTCTGAATAAAGCCTGGAAGGCGTGTGAACGGGCGGCTGTTCAACCAGTGAGTCCAACTAGCAACACATGCTAGCTTGCTAACTTTAAAAAGAGACCAAGGCCAGAATAAAGATGGAAACAATACTTAACCTACCAATCGAAAATAAGATATTTTATGCTGTTCTGGTGTTCTCATGGACGGTGTATCTATGGGAGGCCTACCTTGCCTACAGACAGCGGAGAATATACAGGTTGACCATGCACGTACCACAAGAGTTGGGAAAGATCATGGACACAGATACCTTTGAGAAGTCACGCCTTTATCAACTGGACAAGAGCAACTTCAGTTTCTGGTCTGGACTGTATTCAGAAACTGAGGGGACGCTGATCCTGCTGTTTGGTGGAATCCCTTTCGTTTGGAAAGTTGCTGGGACAGTGACTGCTCGTTTTGGATTGGGTCCAGAGTATGAGATCTTCCAGTCTCTTTCGTTTCTGATACTAGCAACCCTGTTCAGTGCATTCACTGGCCTTCCCTGGAGTATCTACAACACCTTTGTTATTGAGGAGAAGCATGGCTTCAACCAGCAGACGCTGGGGTTCTTCCTAAAGGATGCTGTAAAGAAGTTTATTGTGACCCAGTGTATCTTGTTGCCTGTGACCTCACTGCTCCTCTACATCATCAAGATTGGTGGAGACTTCTTCTTCATCTACGCCTGGCTCTTCACACTGGCTGTCTCGCTTGTTCTGGTGACCATCTATGCGGACTACATTGCGCCCCTATTTGACAAGTTCACCCCTTTGCCAGAGGGTGAGCTGAAGGAAGAGATTGAAAGCATGTCGAAGTCTATCAGTTTCCCTCTCACTAAGGTCTATGTTGTAGAAGGTTCCAAGCGTTCCTCTCACAGTAACGCTTACTTCTATGGGTTCTTCAAGAACAAGCGCATAGTGTTGTTCGACACCCTGCTGGAGGACTACTCTCCCCTCAACAAGGACGGCGAGCCAGAGACTGACACACTAACCGAGGACAAATCCAAGCTCAAGaacaAGAAGCAAGGCTGCAACAATCCAGAGGTCTTGGCGGTGTTGGGCCACGAGCTTGGCCATTGGAAGTTGGGCCACACTGTGAAAAACATAGTAATCAGTCAGATGAACTCCTTCCTGTGCTTCTTCCTCTTTGCTGTGCTAATTGGACAGAAGGAGCTGTTCATGGCCTTTGGTTTCTATAACAGCCAGCCCACTTTGATTGGGTTGATGATCATATTCCAGTTCATCTTCTCCCCATACAATGAGGTCCTGTCCTTCTGTCTGACTGTCCTGAGCCGCAGGTTTGAGTTCCAGGCGGACTCCTTTGCACGGGGCATGGGTCGAGCCTCGGAGCTCTGCTCTGCACTCATCAAGCTCAACAAAGACAACCTGGGCTTCCCTGTGGCTGACTGGCTCTTTTCCATGTGGCACTactcccaccctcccctcctgGAGCGCCTACGGGCCCTGGGAAGCACCAAGCAGGACTGATGAGTCCCAAAAGGAGAGCCACGCCAGCTGCCTCTCCCAAAGGGTCTCCACATGCCTCTTCTGGCACTCTAATGTAGTCTCCCCTATTTTCCTCTCTGTTTCCCTATTTTTGTTCTCCTTTATCCCTGCCATTATGTTCCTTTTTTGGTAA

Function

GO:

id name namespace
GO:0071586 CAAX-box protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K06013 STE24; STE24 endopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1876326 lncRNA upstream 32035 55422393 ~ 55422719 (+) True G1640247
TU1876321 lncRNA upstream 39010 55414476 ~ 55415744 (+) True G1640242
TU1876316 lncRNA upstream 40746 55413780 ~ 55414008 (+) True G1640241
TU1876280 lncRNA upstream 99850 55354567 ~ 55354904 (+) True G1640210
TU1876269 lncRNA upstream 112605 55341860 ~ 55342149 (+) True G1640199
TU1876289 lncRNA downstream 878 55460438 ~ 55464025 (+) False G1640218
TU1876290 lncRNA downstream 878 55460438 ~ 55464025 (+) True G1640218
TU1876336 lncRNA downstream 8371 55467931 ~ 55468192 (+) True G1640257
TU1876334 lncRNA downstream 36596 55496156 ~ 55498648 (+) True G1640255
TU1876499 lncRNA downstream 58086 55517646 ~ 55518062 (+) True G1640411
XM_021574749.2 mRNA upstream 9846 55428446 ~ 55444908 (+) True rlf
XM_036955112.1 mRNA upstream 51388 55375535 ~ 55403366 (+) True si:ch211-15d5.11
XM_036955108.1 mRNA upstream 225878 55226853 ~ 55228876 (+) False LOC118941490
XM_021574735.2 mRNA upstream 315726 55137415 ~ 55139028 (+) False LOC110498133
XM_021574731.2 mRNA upstream 458180 54987738 ~ 54996574 (+) False orc3
XM_021574754.2 mRNA downstream 6348 55465908 ~ 55467811 (+) True atp5if1b
XM_021574753.2 mRNA downstream 9347 55468907 ~ 55472622 (+) True rpl13a
XR_005037852.1 mRNA downstream 11328 55470888 ~ 55470969 (+) True LOC118941555
XR_005037858.1 mRNA downstream 11791 55471351 ~ 55471422 (+) True LOC118941561
XR_005037851.1 mRNA downstream 12601 55472161 ~ 55472242 (+) True LOC118941554
TU1875462 other upstream 485144 54968357 ~ 54969610 (+) True LOC110498128
TU1874741 other upstream 1214003 54240256 ~ 54240751 (+) False G1638780
TU1874742 other upstream 1214003 54240256 ~ 54240751 (+) False G1638780
TU1874669 other upstream 1279624 54174796 ~ 54175130 (+) True G1638710
TU1873637 other upstream 2024194 53430004 ~ 53430560 (+) True G1637730
TU1876918 other downstream 468088 55927648 ~ 55930295 (+) True LOC110498153
TU1877589 other downstream 1040597 56500157 ~ 56505897 (+) True G1641405
TU1877600 other downstream 1050369 56509929 ~ 56511097 (+) False G1641407
TU1877601 other downstream 1050369 56509929 ~ 56511097 (+) True G1641407
TU1877964 other downstream 1366392 56825952 ~ 56830309 (+) True G1641713

Expression Profile