Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021574753.2 |
| length | 732 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 7 |
| gene id | rpl13a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 55468907 ~ 55472622 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0015934 | large ribosomal subunit | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02872 | RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1876336 | lncRNA | upstream | 715 | 55467931 ~ 55468192 (+) | True | G1640257 |
| TU1876289 | lncRNA | upstream | 4882 | 55460438 ~ 55464025 (+) | False | G1640218 |
| TU1876290 | lncRNA | upstream | 4882 | 55460438 ~ 55464025 (+) | True | G1640218 |
| TU1876326 | lncRNA | upstream | 46188 | 55422393 ~ 55422719 (+) | True | G1640247 |
| TU1876321 | lncRNA | upstream | 53163 | 55414476 ~ 55415744 (+) | True | G1640242 |
| TU1876334 | lncRNA | downstream | 23534 | 55496156 ~ 55498648 (+) | True | G1640255 |
| TU1876499 | lncRNA | downstream | 45024 | 55517646 ~ 55518062 (+) | True | G1640411 |
| TU1876787 | lncRNA | downstream | 248214 | 55720836 ~ 55721162 (+) | True | G1640691 |
| TU1876798 | lncRNA | downstream | 255903 | 55728525 ~ 55728767 (+) | True | G1640697 |
| TU1876842 | lncRNA | downstream | 316299 | 55788921 ~ 55794386 (+) | False | G1640730 |
| XM_021574754.2 | mRNA | upstream | 1096 | 55465908 ~ 55467811 (+) | True | atp5if1b |
| XM_021574751.2 | mRNA | upstream | 9347 | 55454754 ~ 55459560 (+) | True | zmpste24 |
| XM_021574749.2 | mRNA | upstream | 23999 | 55428446 ~ 55444908 (+) | True | rlf |
| XM_036955112.1 | mRNA | upstream | 65541 | 55375535 ~ 55403366 (+) | True | si:ch211-15d5.11 |
| XM_036955108.1 | mRNA | upstream | 240031 | 55226853 ~ 55228876 (+) | False | LOC118941490 |
| XM_021574755.2 | mRNA | downstream | 461 | 55473083 ~ 55482568 (+) | True | LOC110498147 |
| XM_021574758.2 | mRNA | downstream | 206446 | 55679068 ~ 55706728 (+) | True | htr1d |
| XM_036955117.1 | mRNA | downstream | 287205 | 55759827 ~ 55785721 (+) | False | kdm1a |
| XM_036955114.1 | mRNA | downstream | 287221 | 55759843 ~ 55785721 (+) | False | kdm1a |
| XM_036955116.1 | mRNA | downstream | 287221 | 55759843 ~ 55785721 (+) | False | kdm1a |
| TU1875462 | other | upstream | 499297 | 54968357 ~ 54969610 (+) | True | LOC110498128 |
| TU1874741 | other | upstream | 1228156 | 54240256 ~ 54240751 (+) | False | G1638780 |
| TU1874742 | other | upstream | 1228156 | 54240256 ~ 54240751 (+) | False | G1638780 |
| TU1874669 | other | upstream | 1293777 | 54174796 ~ 54175130 (+) | True | G1638710 |
| TU1873637 | other | upstream | 2038347 | 53430004 ~ 53430560 (+) | True | G1637730 |
| TU1876918 | other | downstream | 455026 | 55927648 ~ 55930295 (+) | True | LOC110498153 |
| TU1877589 | other | downstream | 1027535 | 56500157 ~ 56505897 (+) | True | G1641405 |
| TU1877600 | other | downstream | 1037307 | 56509929 ~ 56511097 (+) | False | G1641407 |
| TU1877601 | other | downstream | 1037307 | 56509929 ~ 56511097 (+) | True | G1641407 |
| TU1877964 | other | downstream | 1353330 | 56825952 ~ 56830309 (+) | True | G1641713 |
