RNA id: XM_021574772.2


Basic Information

Item Value
RNA id XM_021574772.2
length 3530
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC110498162
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56850905 ~ 56862683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagttgcccatccctggtctaagTCAATATAGCTACTTTCCTAATTATGAGACAATCTCCGCGTTTCTATTGTAACAATTATTACAATATGTTAAATGTCTGTTTTTCATATAGATCGTTTACCTGCATCATATAGTTCCTCCATGCCGTTGAGGGGCGCATGTTCGTCATAAATAAACGCCATCGATAAACCCAGGAGCTCAGCCATGTTGAAGAAGTCTCAGCGCTGAGAGAGCTGCATCCCGCCATTGTGTAGATTATATGCTCTGTAGAGAGACAGGGACTCTTGACTAACTCTCAATATACATTTCATACACCCTGCCACTTAAAGAAATAACAAAAAATTCTAATACAAAAAAGGCTCCAGGGAGAAAGACATGTCAGCCAGCAGCCTTCTTGAACAGAGACCGAAAGGCCAAGGAAACAAAGTGCAAAACGGAGCTGTGACCCAAAAGGATACTTTGAATGATGATGAGTTTGAGCCTTACCTGAACCCTCAGGCCAGACAGAGCAATGCCTATACGGCCATGTCGGACTCCTACATGCCCAGTTACTACAGCCCATCCATAGGATTCTCTTACTCCTTGAACGAGGCAGCATGGTCCACCGGGGGAGATCCTCCCATGCCTTACCTGACCTCATATGGACAGCTGAGCAACGGGGAGCACCACTTCCTGCCTGACCCCATGTTCGGCCAGCCAGGCCCGCTGGGCAGCAACCCCTTCTTGGGCCAGCACAGTTTCAACTTCTTTCCCAGCAGTATGGACTTCTCTGCCTGGGGCAACAACAGCTCTCAGGGACAGTCTTCGCAGAACTCTGGCTACAGCAGTAGCTATGCCTACGCACCCAGCTCGCTAGGGGGTGCCATGATCGACGGACAGTCCCCCTTTGCCCAGAACGAGCCCCTCAACAAGGCACCTGGCATGAACAGCTTGGACCAGGGCATGGCTGGACTTAAGATTGGTGGCGGTGCAGGGGACATGGGGGCCCCAAAGGTGGTGGGCTCTGGCCTCCCCAGGGGATCCCTAGGCCACAGCCAGGTTTCTGGTGGAGCTCCCAGCATGCCACTGCCCCCCGTGTCCATCGCCCCCGCTAAGCCCGCCTCCTGGGCGGACATTGCCAGCAAGCCGGCCAAGCCGCAGCCCAAGCTGAAAACCAAGGGTGGCATAGCGGGGACCAACCTGCCCCCTCCGCCCATCAAACACAACATGGACATTGGCACTTGGGACAACAAGGGGACCATGCCTAAAGCGTCCACCCCCCAGCAGGCGCCGCTCCCCAGCAACGGGCAGCCGCCCAACCAGGCCTCACCTCAGCCCGGCACCATGGCCGGAGGGACCCCGCAACTGCCCCTCAGCAATGGACAGTTGGTGGCCTCTTCGGCCCAGCTGGGGCAGCACCAATTCCCCCCCAACGGGCAGCAGGGCATGGGGGGGCAGCTTCAGCTTTCCCAGGGCCCCCCGCCCACCACCCTGCCATCTCAGCCCACCCGCTGGGTCCCTCCACGGAACCGTGCCAACGGCTTTGGGGATGCCGTGGGTGGGGCGGGGCAGTCGCCCCCCAACTCGGGCGTGGGTGGGGTGCTGGTGCTCTCGGAGCCCCACCCGGTGCTGGAGAAGCTGCGCCTGGTCAACAACTACAACCCCAACGACTTTGACTGGAATCTCAAGCAGGGCCGTGTGTTCATCATCAAGAGCTACTCCGAGGACGACATCCACCGCTCCATCAAGTACAACATCTGGTGCAGCACGGAGCACGGCAACAAGCGGCTGGACGCCGCCTACCGCTCTCTGGGCGCCAAGGGCCCCCTCTACCTGCTCTTCAGCGTCAACGGCAGTGGCCACTTTTGTGGCGTGGCGGAGATGCGCTCGCCCGTGGACTACAACACCTGCGCCGGCGTGTGGTCGCAGGACAAGTGGAAGGGGCGTTTTGACGTGCGCTGGATCTTCGTTAAGGACGTTCCCAACAGCCAGCTACGGCACATCCGCCTGGAGAACAACGAGAATAAGCCAGTGACCAACTCGCGGGACACACAGGAGGTGCCTCTGGACAAGGCACGGCAGGTGCTGAAGATCATCGCCGGCTACAAGCACACCACCTCCATCTTTGACGACTTCTCCCACTACGAGAAGCGCcaagaggaggaggactgtgtgaAAAAGGTGGAGGTCCAGGGTAGCGAGCCGTACCCCAGTAACCCCAACCCCAGCAGGAGTCATTACAGACTTCAGGAACGCCAAGGACGTGTCAAGTAACAGTCACTGCTTTGGGCAAAAGACTGCAATGGCCCCTCTTTTCCCTTTCTACCCCCATCACATTCAGATATTTCAAGAAATTCTAAAATGGGGCAAAAAAAATTAACCAaggacacacaaaaaaaaaaaacgaaatgaAGACTTTCTTGATTTCTTTTTACTTTAAAAGACTGACTTTGAACCTGTAGTAAAATAAAAAGAAATTATTATTCATAGGACTAAAACTTTGATGCATAGCATCCTTAGGTGAATCTCCCCACCCCCCCATTCCACTACATATGCTTTTTTTTTCTTACTCCCCCCTGCCCCGCCTGTTTTTACAGTCTGAAAACAAGTCTGTAATTCTTCTCATGCAAAATAATAGTGGACATTTTTTTGGTGTCATCTACTACGGCTACTATTAGTGGACAGAAGTCCAGGCGGGTCATTATGTAAACCACCTCCTCCAGTGGGAGATTAAATCATCCAATCAGgacgcggggggggggggggtctcctcaGTGGATATTTGTTGTAGTGGGTCCTGTCATCAGTTCCTTCAAGAAGTTTCTTTTTCATATGCTTCCATCTGTTTATAAAAAAAGAACTAAAACAAATGATCGAGATGACCTTGTTTATTTTTTGTGTTGGGCAGAGTGTATGGGGGGCGGGGGTtaaggttggggggggggggggggggggtgaaagcaACAAGATTTGTTACGTTTAGCCTTGGTCATTGTATAATTTTATGTACAATTGTACAAAATTGGGCTGTTTGCAGACTTCAGAACTTATTTGCCCTTTTTTTCTTGGACTGGTTTATTAATGTTTTTATTGGCTGCTTCCCTCCTGCCATTTTTGTTTCCTCTTCCTCCCGTTTTCTTAAAGACCGCGCCGACGCGAGTGGCCTTGCCCCCCCATTCTTTCTATTGATCAGTTCGAAGTAATAAACGTTGTATACTCAGCAAGAACTCGTGTGCATTCCCCTTGTTTGACTGTAAACACTTTTCATGCTGTGTGCATCCCCTTTTCAGATTATTAGTTTTTATTAAgggtaaatgttttatttggtaAGGAAGCCATATTaccccaaacccccccccccccccccccccccccacacacacacacttaattctACCCCAAACATCCCTCTTTTACTACTAACCACTACTGTCTCTTTCCACTGCCTGCTCTACCATAACACCACCACCCTTGCAGAATGTCAATGTTGGTGAAAACACTACTGGCTTTTCTCtgtggtataataataataataaagtcaATCTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1877970 lncRNA upstream 15287 56834989 ~ 56835618 (+) True G1641718
TU1877963 lncRNA upstream 25963 56824111 ~ 56824942 (+) True G1641712
TU1877951 lncRNA upstream 46496 56804066 ~ 56804409 (+) True G1641701
TU1877947 lncRNA upstream 49764 56800834 ~ 56801141 (+) True G1641697
TU1877942 lncRNA upstream 53585 56797054 ~ 56797320 (+) True G1641694
TU1878005 lncRNA downstream 33215 56895898 ~ 56897188 (+) True G1641747
TU1878009 lncRNA downstream 36194 56898877 ~ 56906795 (+) True G1641749
TU1878016 lncRNA downstream 58299 56920982 ~ 56921219 (+) True G1641755
TU1878017 lncRNA downstream 60137 56922820 ~ 56923311 (+) True G1641756
TU1878031 lncRNA downstream 94530 56957213 ~ 56957483 (+) True G1641768
XM_036955123.1 mRNA upstream 266227 56444523 ~ 56584678 (+) False LOC110498155
XM_036955124.1 mRNA upstream 266227 56444523 ~ 56584678 (+) False LOC110498155
XM_036955126.1 mRNA upstream 266227 56444523 ~ 56584678 (+) False LOC110498155
XM_036955125.1 mRNA upstream 266227 56444524 ~ 56584678 (+) True LOC110498155
XR_005037772.1 mRNA upstream 312276 56534070 ~ 56538629 (+) False LOC118941494
XR_002469781.2 mRNA downstream 195851 57058534 ~ 57062178 (+) True LOC110498163
XM_021574774.2 mRNA downstream 212844 57075527 ~ 57080042 (+) True LOC110498164
XR_005037776.1 mRNA downstream 223610 57086293 ~ 57088604 (+) True LOC110511273
XR_005037779.1 mRNA downstream 226386 57089069 ~ 57096631 (+) False LOC110517953
XR_005037778.1 mRNA downstream 226387 57089070 ~ 57096631 (+) False LOC110517953
TU1877964 other upstream 20596 56825952 ~ 56830309 (+) True G1641713
TU1877600 other upstream 339808 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 339808 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 345008 56500157 ~ 56505897 (+) True G1641405
TU1876918 other upstream 920610 55927648 ~ 55930295 (+) True LOC110498153
TU1878241 other downstream 273143 57135826 ~ 57143925 (+) True G1641935
TU1878413 other downstream 412370 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 793666 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 1301794 58164477 ~ 58176485 (+) True G1642993
TU1879589 other downstream 1430653 58293336 ~ 58298235 (+) False LOC110498189

Expression Profile