RNA id: TU1877946


Basic Information

Item Value
RNA id TU1877946
length 317
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110498162
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56850905 ~ 56862683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGATTTGTTACGTTTAGCCTTGGTCATTGTATAATTTTATGTACAATTGTACAAAATTGGGCTGTTTGCAGACTTCAGAACTTATTTGCCCTTTTTTTCTTGGACTGGTTTATTAATGTTTTTATTGGCTGCTTCCCTCCTGCCATTTTTGTTTCCTCTTCCTCCCGTTTTCTTAAAGACCGCGCCGACGCGAGTGGCCTTGCCCCCCCATTCTTTCTATTGATCAGTTCGAAGTAATAAACGTTGTATACTCAGCAAGAACTCGTGTGCATTCCCCTTGTTTGACTGTAAACACTTTTCATGCTGTGTGCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1877985 lncRNA upstream 1454 56860205 ~ 56860646 (+) True G1641732
TU1877970 lncRNA upstream 26482 56834989 ~ 56835618 (+) True G1641718
TU1877963 lncRNA upstream 37158 56824111 ~ 56824942 (+) True G1641712
TU1877951 lncRNA upstream 57691 56804066 ~ 56804409 (+) True G1641701
TU1877947 lncRNA upstream 60959 56800834 ~ 56801141 (+) True G1641697
TU1878005 lncRNA downstream 33482 56895898 ~ 56897188 (+) True G1641747
TU1878009 lncRNA downstream 36461 56898877 ~ 56906795 (+) True G1641749
TU1878016 lncRNA downstream 58566 56920982 ~ 56921219 (+) True G1641755
TU1878017 lncRNA downstream 60404 56922820 ~ 56923311 (+) True G1641756
TU1878031 lncRNA downstream 94797 56957213 ~ 56957483 (+) True G1641768
XM_036955123.1 mRNA upstream 277422 56444523 ~ 56584678 (+) False LOC110498155
XM_036955124.1 mRNA upstream 277422 56444523 ~ 56584678 (+) False LOC110498155
XM_036955126.1 mRNA upstream 277422 56444523 ~ 56584678 (+) False LOC110498155
XM_036955125.1 mRNA upstream 277422 56444524 ~ 56584678 (+) True LOC110498155
XR_005037772.1 mRNA upstream 323471 56534070 ~ 56538629 (+) False LOC118941494
XR_002469781.2 mRNA downstream 196118 57058534 ~ 57062178 (+) True LOC110498163
XM_021574774.2 mRNA downstream 213111 57075527 ~ 57080042 (+) True LOC110498164
XR_005037776.1 mRNA downstream 223877 57086293 ~ 57088604 (+) True LOC110511273
XR_005037779.1 mRNA downstream 226653 57089069 ~ 57096631 (+) False LOC110517953
XR_005037778.1 mRNA downstream 226654 57089070 ~ 57096631 (+) False LOC110517953
TU1877964 other upstream 31791 56825952 ~ 56830309 (+) True G1641713
TU1877600 other upstream 351003 56509929 ~ 56511097 (+) False G1641407
TU1877601 other upstream 351003 56509929 ~ 56511097 (+) True G1641407
TU1877589 other upstream 356203 56500157 ~ 56505897 (+) True G1641405
TU1876918 other upstream 931805 55927648 ~ 55930295 (+) True LOC110498153
TU1878241 other downstream 273410 57135826 ~ 57143925 (+) True G1641935
TU1878413 other downstream 412637 57275053 ~ 57276777 (+) True G1642062
TU1879008 other downstream 793933 57656349 ~ 57682553 (+) True G1642565
TU1879513 other downstream 1302061 58164477 ~ 58176485 (+) True G1642993
TU1879589 other downstream 1430920 58293336 ~ 58298235 (+) False LOC110498189

Expression Profile